Array 1 3741513-3739461 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023525.1 Cedecea neteri strain FDAARGOS_392 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3741512 28 100.0 32 ............................ CAGAATTGATGCGGCATGGATATTAAGGCCAT 3741452 28 100.0 32 ............................ TTTGTGACTCAAGCTCTTCGATGCGCTTCTCT 3741392 28 100.0 32 ............................ ATCACCGGCGACTTTAAGTGGCTCGACACCTT 3741332 28 100.0 33 ............................ TGCCTGGTACACGGCGGAAGATAATGCTCTTAC 3741271 28 100.0 33 ............................ CGCTAGGTGCCAGAGAAGGCTGCGGGTCGGCAT 3741210 28 100.0 32 ............................ TGAAGTCTGCGAACGAAATCTTCGCTACCTCT 3741150 28 100.0 32 ............................ CATCCATCCGGCAAGACCACAGGAAGCGCCCA 3741090 28 100.0 32 ............................ TACAGATGACGCTAAGAGTCAGGGAATAACTG 3741030 28 100.0 32 ............................ TACGTCTCTGGCGGTACCGGGCAGGAATTGAT 3740970 28 100.0 32 ............................ ATCATTAAAAATATTGTTGATGTGCTTGATGA 3740910 28 100.0 32 ............................ TTTGATATGAGCCCTTGAGGAAGTCAGTTAGT 3740850 28 100.0 32 ............................ GAACACAGATAACACGGTATCTCTGACCGTCG 3740790 28 100.0 32 ............................ ACAACGTAGTTATTCCGTCCGATGAAGCTGAA 3740730 28 100.0 32 ............................ AGAACCTGACCGCCGTCCTTGTAGACGCGCAT 3740670 28 100.0 32 ............................ GGATGGGCGATCACTAAAGGCGGCTATGCGGT 3740610 28 100.0 32 ............................ TCTTTTGTATCGAGCCCCGGCACACCGAGAAT 3740550 28 100.0 32 ............................ ATTCGTCAGCGTAAGTGTACCTTGAGCCATAT 3740490 28 100.0 32 ............................ CGTATATCCCGCACCATGAACGTTGTGCTGAA 3740430 28 100.0 32 ............................ TCTAAAGACTGGCTAATCACTGCTGGTGTTAT 3740370 28 100.0 32 ............................ ATCACCAGATCGTCGGTTGTCTTTGAGCCAGT 3740310 28 100.0 33 ............................ CTCTGCTACCCACGGATCCAAAAATTCTGCAAT 3740249 28 100.0 32 ............................ TCGCCAGTTACGACGGAGAAATCGTTACGGTT 3740189 28 100.0 32 ............................ TCCGCTACGCCATTAAGCACGTTGATGCTGTT 3740129 28 100.0 32 ............................ TGGTGAGATTCATCTGTGAAGCGATCGGGGAA 3740069 28 100.0 32 ............................ TGTGAAATCGGCATCTTGTTACCATCGGCATC 3740009 28 100.0 32 ............................ ATGTTGTTGTTCAATCCGTAACAAATACCGGC 3739949 28 100.0 32 ............................ GCTGACTTTGGCCAGATCCTGCGCCGTGATTT 3739889 28 100.0 32 ............................ ACGCAGGCTTTCAACATCAATCGCTTTAACCA 3739829 28 100.0 31 ............................ TGAAGAGAAGGCCGGGGCTGCTTAGGAGTTG 3739770 28 100.0 32 ............................ ACGTCCGCCAGCGGTTGCGCCAGTTCCACGCG 3739710 28 100.0 32 ............................ ACCATTTGTGATCCCCCAGGTCGCCAGCGGGC 3739650 28 100.0 32 ............................ GGTCGGCAGCGCGGCGGCGGTAGCCTGCCCGG 3739590 28 100.0 33 ............................ AGAAAATATATTGCTATCGGGAAATAATCATGC 3739529 28 100.0 13 ............................ CTGTTTCGATACA Deletion [3739489] 3739488 28 75.0 0 ...........C.........AGGCG.G | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGAACTCACTTCGTCTTAAATGGTAATGTTTACGATGCAAGATATGCTTAAAATGCCATTTTTGTATCGTATTCGATGCGGGTTGTTGCGTAGTGGTAATGCATTAAATGCCAGAACTCAAATGTTAAAGCATTCGCTGTGAAATGCTCTTGTTTACTGTCGCACAGGCAGAGTTGAAGTAGTCGCGATGAGCATTCTTAGGAGATTTCACCGCCGCATAGGTTATGAGCGACCATAAAACCAGGGATCTTGCCGTCTGATTTTTCCAAGCCTGTTCGTTGCCCCTGCCTGTTCGTCATCCAAAAAATGGGTTTGAAGCACGGATTACAGCTGAATAACCATCGATGCTAAAAGCCGAACGTTCGCAAACCCTATTTTTATCTCAGCTCGTAACCTATTGATTTATAGATTCTGTGCCGTTGCACCTAAAAAAGGGTGTGAAGTCAAAAAGAGGCGGTTTTGTTTCTTGCAACAAAGGGTTAGCTGTGAAAAGCTCTT # Right flank : GTACGATAAAATTAAGTGTCTCGCCTGCATTCCCTCACGCCAGCCCCAGAACCCTGTCCAGCGACCAGCGGCCTGCTCCACGGGCGAGGACTAGCAGCAGCAATCCGCCCCAAATCAGGTGCGTTGGCCATGCATCCGGGTAGACAAAAATCTCAATCACCAGGGTCATAAACAGCAACCCCGTGGCGGCGAAGCGTGAAAACAGACCCAGCACCAGCAGAACAGGGAAGGTGTGTTCGGCGAATGTGGCGAGGTGCGCGGCGATGTTATAGGGGATAAGCGGCAGCGCGTATTCGGTGCGGAACAGCTCGTAGGTGGACGGTTTCAGCGTCATAAATCCGGTCACTTTGGTGCGGCCAGACAGGAAGAACACGGCGGCAATGCCCATGCGGGCTATCAACAGCAGCAAATTGTCACCAATACTTCTCTGGATCCTACCCCAGAGTCTATTCCACAGCGCTCTCGCGCCTTGTTCCGTCGTTTTTTGTTCAGATACTTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3753703-3753375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023525.1 Cedecea neteri strain FDAARGOS_392 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3753702 28 100.0 32 ............................ AGTCCCGCTGGAGCAGTGGTGCCTGGCTGGCC 3753642 28 100.0 32 ............................ GCAATAACGCTGATTAAACCTAACACTGGCAC 3753582 28 100.0 32 ............................ TGTGCAACTTCCTCAATGCTGAACCCGGCCTC 3753522 28 100.0 32 ............................ TACCACCGGACGGACGTCACGCTCAGCCTGAC 3753462 28 100.0 32 ............................ AGATTACCTGAATATCTCAAGCCTGCAGATAT 3753402 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTCGAAAAAGATGGGCGCGAGCTAAAAATTCGTGTTGAAGGGCAATTGACGTTCAATAGCCTTCGCCAGCGCATTGATGCTGCGTTGCTCGGCCTGGGGCTGGCTTTTGTCCCGAGCGATACGGTAACCGACAAGATTGCCGAAGGACGACTGGTGCGGGTGCTTGAGGCCTGGTGCAAACCGTTTCCCGGTTATTATCTTTATTACCCCAGCCGCAAGCAGCATACGACAGCCTTCTCCCTGCTGGTGGATGCGCTGAGATATTCGTCCTCACCCACAGATGATTAATGGATTATCGATGAGTTTTTCCGAACGATTTGCGAGTCGTTGCTGAAAATTCACCGATGCCGAAGCCTGAACGTTCCCAGACCCTTTTTTTAGCCCTGCTCGTAACTTATTGATTTGTCGATTATGCGCCGTTGCCCCTAAAAAAAGGGTGTGAAGTGGGAAAGAGATGGTTTTACCTATTGCAACAGAGGGTTAGCTGTGAAAAGCTCTG # Right flank : ACTTCGCCGCCGCCGCTCTCTTCGCTGCCGCACAGTCAACACACATCTTGAGATGATGGAGCTGTTTAAATAACGTTCACGTCTGTAGCCCAATTGGGCTACAATATCTATACCAGTTAATGAAGTGAAGGAGGATTTATGAGTATCAATGCCGTGGTACGTGCCCGGATTGACCCTGCTATTCGTGATGAGGCTACAGAAGTATTGGCTCAGTTTGGCATGACCATAAGTGACGTTATGCGGATGACCTTAGCGTATGTCGCTAAAGAGCGCGCATTGCCTTTCGAAATGCGCCTGAATGCAACGACTATCGAGACGATTGAAAAGGCCGAGGCGGGAATAGAGGTTCATCGCGCTAGTGATGCCAAAGATTTGTTCGACCAACTGGGGATGTAATTCATGCCCCAAAGGGAGATCAGTTACACCGGACAGTTTAAGCGTGATTTGAGGTTGGCCCAAAAAAGAGGATGCGATATCCCAAAGCTGCAGGGCATCATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //