Array 1 138587-140002 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGPB01000007.1 Staphylococcus pseudintermedius strain VTH633 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 138587 36 100.0 30 .................................... AATAGAAGTGTTTGAACAAAATGCCAAAGG 138653 36 100.0 29 .................................... AATAACGCAGGTACTAAACCAGAGATTAT 138718 36 100.0 29 .................................... TATAAATTTGAATATATGAGCAAATTAGC 138783 36 100.0 30 .................................... ATCTTCACTTGTCATAACGTAAAGGTTTAC 138849 36 100.0 30 .................................... TTGATATCAGAAATCAGAACATTCAAAAAA 138915 36 100.0 30 .................................... TGAAAAAGTCATAGCATTATAATCAAAATT 138981 36 100.0 29 .................................... TTAAATTCTGGTGATATTATTACCTACGA 139046 36 100.0 29 .................................... GCTGCAGGACCTTCCATTACATTTCCTTG 139111 36 100.0 30 .................................... AAAAATGCTTGGTCTTTACTGATTGAAGTT 139177 36 100.0 30 .................................... AGTGTTACTTATGAAGCTTTCACGGAATCT 139243 36 100.0 30 .................................... TCACTTATCTGATGCTAAAGGTGAGTTTGT 139309 36 100.0 29 .................................... AACTGTCAATAATACCCCCTACAAGATGT 139374 36 100.0 30 .................................... GACGAAGAACTTTATGTTTTGAAATACAAA 139440 36 100.0 30 .................................... ACGATGAATAACCTCTTGTACACCACCGCC 139506 36 100.0 30 .................................... GGCGCCTTAACGTTCAATTAATATCAATAA 139572 36 100.0 29 .................................... AGAAGCTATATTCAAGCAAATTATTGATA 139637 36 100.0 29 .................................... TGATTTTTGGTTAGGTCAACTTATGACAA 139702 36 100.0 30 .................................... AAAGAATACTATAAAGAGCAAAGTAAATAC 139768 36 100.0 30 .................................... AATTATCGATGTCATTCAAAATGGTGGACA 139834 36 100.0 30 .................................... GTAAACACTGTTTATCATGTTGAAGTGGCC 139900 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 139966 35 86.1 0 .........T................-.CA.C.... | TC [139999] ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.2 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTTTTTCCGGAGTCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTGTCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //