Array 1 4335282-4337948 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOCJ01000001.1 Xanthomonas vasicola strain NE744 NE744_000000F_arrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4335282 31 100.0 34 ............................... GCAAGTCGTTGCGGTGGGTACGCTCGATGCCACG 4335347 31 100.0 36 ............................... ACAACATCGCCAGCCATAGCAATTACACTTGCTGCA 4335414 31 100.0 36 ............................... ACGTCAATCCCGCCCTCAAGGACAGGAGTCCTGCCC 4335481 31 100.0 34 ............................... TTGATTACACCCTGCAACACATCTGCACCCATCC 4335546 31 100.0 33 ............................... TTCTAATCCCGAAGAAGTCCTCGAAATCCACCG 4335610 31 100.0 35 ............................... GGGCAAGAACTGGGAGCCCAAGGAGGTAAATGGCA 4335676 31 100.0 33 ............................... ATAGTCATCAATGGGTTGCCCAATGGGCTCCAT 4335740 31 100.0 33 ............................... ACCCGAATAATCCAATTCTGTGCTGGTCTTGCC 4335804 31 100.0 35 ............................... CGGAATGCACCAGTGTGGAACCAAGGGAATGGCCC 4335870 31 100.0 34 ............................... TGATAGCCCGTCACAGTAACACCAACACTTGATT 4335935 31 100.0 34 ............................... TGCGACTTCAGGGGCCGCAAGTACTCTATGACCA 4336000 31 100.0 35 ............................... TTGGTAGCTGTTATCTCGGTACAGAGGCATACCGG 4336066 31 100.0 35 ............................... TCTCTATTGGTTGGGCTTGCGTCGGTTGGGTTACT 4336132 31 100.0 35 ............................... CCGACGAACGCATACAACAGATCGCAAAGATCGCC 4336198 31 100.0 37 ............................... GGTGTCAGTTGGCCGTGCCATTAGGCAGCCTCCGCGA 4336266 31 100.0 37 ............................... TTTACGCCTGAGGGCAAGACCATCGAGCAGTGCGATA 4336334 31 100.0 34 ............................... TGTGCACCTTCTGCAACCGGGGCGGCTGCATTGG 4336399 31 100.0 35 ............................... CGCCGGTATGCATCCTTTGCAAAAGTCATTACAGC 4336465 31 100.0 36 ............................... TCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC 4336532 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 4336599 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 4336664 31 100.0 35 ............................... ACCATTGTGCTCATGTAGGTACTACGGGCGGCACT 4336730 31 100.0 36 ............................... CTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG 4336797 31 100.0 34 ............................... TCAGCCGGCAAGAGACCCATATCATCCAATTTGC 4336862 31 100.0 36 ............................... CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCCC 4336929 31 100.0 35 ............................... GGACAGGTCGTCCGATGTTGGAACTTTCCGGCCGT 4336995 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 4337061 31 100.0 36 ............................... ATTGTCGTGATCGCCAAGGCTGTTATCCGCGCTGTA 4337128 31 100.0 35 ............................... AGGAGCTCAATGCCCGCCCAATCGGCCGGATTAAT 4337194 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 4337260 31 100.0 35 ............................... CAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGA 4337326 31 100.0 36 ............................... CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 4337393 31 100.0 33 ............................... AAGACTTGGTACTTTGATGAGAGTGCTGAGGGA 4337457 31 100.0 36 ............................... CTGAGCCCGTGCCAAGTGACTTACCTGCCAAAGGAA 4337524 31 100.0 34 ............................... ATCGCGGCGGGGAAGTACCCAAATAGCACGGAGT 4337589 31 100.0 34 ............................... CGGGGACTTTGAAGATGCAAGGCTTATCGAGTGG 4337654 31 100.0 36 ............................... CGCTCTTGGTGTATTCAGTTACGACCGATGCAACAG 4337721 31 100.0 34 ............................... TATGCACACTACTGGAAGGGTGCACATAGCCCGC 4337786 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 4337852 31 100.0 35 ............................... ATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCT 4337918 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 41 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CTGGTAATTAGAGTCAATTGTCAAGGCGTTTTGCGGTCGCGCCCTCACGGTGTCACCAGCACTTTTAATCTGACCCACTTCAGCAACTTCAAACTGACCCACCTCTCGTAGTCTTTGGCCCTTTTGCAGGGCCATGCTGACCGTAGAGGAACAAGTGGAGATCAAGATATTGGCCCGACAGGGCATGAGCATCCGGGAGATATCCCGGCAGTTGCAGGTATCGCGCAACACGGTGCGGCGTTACCTGCGCGAGGTGGCAGCGGCCCAACGCAAACCGCGTGGTGTTCGACCCCACAAGTTAGACCCGTACCGGTCCTACATTGAGCAGCGCGTTCGCGCGGCGTATCCGGCCTGGTTGCCGGCCACGGCGATCGAGCAGGAGATCAAGCTGTTGGGCTATCGGGGCGGCTTGTCACGGTTGCGCCAGTTCATGCGCAGCCTGCGTGTGATCCGTCCGGAAGAGCCGCTGGTGCGTTTTGAGACCCCGGCTGGGCAGCAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4339957-4341433 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOCJ01000001.1 Xanthomonas vasicola strain NE744 NE744_000000F_arrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4339957 31 83.9 35 ..T...TTGA..................... CAGTGCCTATGCAGCGGCTGTATCAGCTTCGACGC T,A [4339962,4339969] 4340025 31 100.0 35 ............................... TATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGG 4340091 31 100.0 34 ............................... GAGATACGCGACATGATTGCGTGGGTGTACGGCT 4340156 31 100.0 34 ............................... CAACGATACCCTTGGATCGCCAAGGTGATGATGC 4340221 31 100.0 35 ............................... AGCGACAGTGAGTACGCCAAGGCAGCGCAGTACCT 4340287 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 4340353 31 100.0 34 ............................... TGCGCAGTCAGGGGACACGATCGGGACTTTCGTT 4340418 31 100.0 35 ............................... CTGAACTTAAGAAGCAACTATTTAACCAATACATC 4340484 31 100.0 34 ............................... AGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGA 4340549 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 4340615 31 96.8 35 ..............................A TTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAA 4340681 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 4340747 31 100.0 35 ............................... ATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTA 4340813 31 100.0 34 ............................... CTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCC 4340878 31 100.0 34 ............................... TCCGCCAGGGCGTCAATATCGGCCTGGGTAAACC 4340943 31 100.0 34 ............................... GCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA 4341008 31 100.0 34 ............................... ATCACGTCATCCATCGCATCGATATAACGGGCCG 4341073 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 4341141 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 4341207 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 4341272 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 4341338 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 4341403 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 98.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGCAAGACCCACCTGGCGATCAGCTTGGGCTATCTGGCCACGCAGGCAGGCATGAAAACCCGCTTTGTCAGTGCCGCCGACCTGATGGTGGCCATGATTGCCGCCCAACGCCAGGATCGGCTGGCCGACTTCATCCGCCGCAACGTGATGGGACCGCGCCTGCTGATCATCGACGAGATCGGTTACCTGCCGATGAGCCGCGACCAGGCCAACCTGTTCTTCCAGGTCGTGGCCAAGCGCTACGAGAAGGGATCCATGGTGCTGACCAGCAACTTGCCGTTCGGACAATGGGATCAAGCCTTCGCCGGCGATACCACCCTGACGGCCGCCTTGCTGGATCGATTGTTGCATCACGCCCACGTCATCCAGATCAAAGGAGAAAGCTTCCGACTCAAAGACAAACGCAAGGCCGGCATCATTCCATCCCGCCAAACCGCGGAACACATCGAGGTGGGTCAAATCTAAGGTGCTGATCACCGATCAAGGTGGGTCAGTTTGAA # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //