Array 1 2326049-2326686 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRC01000001.1 Streptomyces cavourensis strain DSM 41795 Ga0264341_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2326049 29 100.0 32 ............................. TCGCTGGCCAGCCGCCGCGCGTGCCGTGATGA 2326110 29 100.0 32 ............................. GCCACTCGAGCTGGCTGCGTCTTGACCGCTCC 2326171 29 100.0 32 ............................. CCTTGATGCAGGCCGGTGTCGACGTCGCGCGT 2326232 29 100.0 32 ............................. CCTCCGCGCTCGCCGCCATGATGAGCGGCACG 2326293 29 100.0 32 ............................. CTGCGCAGGGCCTCGCGCTGGCAGCTACAGCG 2326354 29 100.0 32 ............................. CCGCGATCGAGGCTCGATGTCGATGTTCTTCG 2326415 29 100.0 32 ............................. GACACGTCCAGTGACTACCGCTACCACAACCG 2326476 29 86.2 32 ...A....T...C....A........... ATCCACTGCACGATCGTGACAGCGGCGGAGCC 2326537 29 86.2 32 ........T...C....A..........A ACAGACCGCGCCGACGCGAGGCTGATCGCCTC 2326598 29 89.7 34 ........T...C....A........... GCTCCGCCGCCGCTGCCCTGTCGTTCGGCTACGG 2326660 27 79.3 0 --......T..AC.........C...... | ========== ====== ====== ====== ============================= ================================== ================== 11 29 94.7 32 GTGGTCCCCGCGTGAGCGGGGGTGTTCCG # Left flank : CACCGAAGGACGCCTTCGCCCGCGCCCTGCACATGGCGGACCTCTTCGCGGACTCGAAGCAGGACTTCCCGGGGGCCGCCAGGATCATCGACCGGGCGCTGAACCTGAAGGACGAACAGCCGACTCCGCTGCAACGGTTGCGGCTACTGGTGTTGCGTGGGGACCTCGCGCAACGGCTGGGGGACGCGGAGGGGGCACGGGGGTGGCTGGAGGCGGCGGAAACGGTTCAACTCACCGCCGGGGAGGAGGCCTTGGCCCGCGATGCGCTGGCTCGGCTGGAGGAGCTACGGGGGTGATGGAGCAACCGGTCGGCCGATGGGGGCTACCCCTCCAGGCTCGGCGGGGGCGCCCCCTTACGGCTCTCTGCCGAACCAGTCGCCATGTGGACGGCTCACGAACCAACTGCGCCCGGCCGCCCGCTCTGTGATCATGTAGAGGTGAGCACGCAGCTTAAGGGTCAAGGACTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGT # Right flank : CGGCGCTGATGCTCCTACCGGCGGCGTCGGCCGAACCGACACCCGAGTGGGTACTGACCCGCCACCAGCATTGGGCGACCGAATCCGCACGGCACGCACTGCCCTGAAGGTGTCGCAGGAGCGCCTGTGCGAACTCAGCGGAGTGGACCGGCAGGCGATCAATCGCATCGAGCTGGGCCGTCACGCCACCGCATCGACACGCTGTACCGCATCGCCCGGACACTGAGGGTCCCGCTGTCCGGCCTCGTACGCGAGTAGGGCATGGCCGCGCGCACGGCCATGCCCCCCCCCTGTGGGCTATGTCCTCCTGGGCTGGATGATCGCGGCCGGGTCCCGGAGCCAGATGTGCTGGCCGCGGTCGGTCACAGTCATGCCGAACTGCTCGGCGTCCGGCAGGCCGGCCGACTCGTACTCCTGCCAGACCTGCTCGATCTCGTCCCACAGGAGACCGGGCCCGTACTGCCATGTTCTCCTCGCCGGTGGCGGCGGTGGCCGCGGCT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2331528-2332343 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRC01000001.1 Streptomyces cavourensis strain DSM 41795 Ga0264341_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2331528 29 100.0 32 ............................. ATCCTCAGCAAGGCAGATGAGATCGAGACTGC 2331589 29 100.0 32 ............................. TCCCGGTGAGCCGCCTTACCTCGGCAACTCAC 2331650 29 100.0 32 ............................. ACCGAACTCGCCCGTTTCTTTGTCCAACTCAC 2331711 29 100.0 32 ............................. AAAGCGGTCGGGGACGCGGTACTGGAGCGGCA 2331772 29 100.0 32 ............................. CCTCATGTCGAAGTACAGCAGCACCCGCGACT 2331833 29 100.0 32 ............................. CAGGCGTATGCGGGGCGCCGGTGGAAACTCCA 2331894 29 100.0 32 ............................. CCGCAGCACCGTGGACGCAGCAGACCCGGGCC 2331955 29 96.6 32 .................A........... CTCACATGCGTCCGCTTAGGCCGATTTGCGAG 2332016 29 100.0 32 ............................. TCGTCTCCGATGGGTGCGGAGTCGGGGTCTTC 2332077 29 100.0 32 ............................. GTCAGCCAGCCTTCCGTGCAGTGGTCGGCGGC 2332138 29 100.0 32 ............................. ATGTCGCGGAGCGCGCGGTCCAGGACGATCTG 2332199 29 96.6 31 ..................T.......... GACCCCCCCATGACCGCTCTTCCCGGGCAGC 2332259 29 93.1 29 ........................GC... CTGACCCGTGAGGGTGCGCGGCGTGGGTG 2332317 27 89.7 0 ........--..................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CCAATTTGGGCGCCCAGGAGGAGGATTCCAGAAGCCAGTTCACCGATCGCCTGTGGTGAACCAGCATCCGGGGGCCCGCCGTACCGACCCGTCCTGTCTCCGGGCGCGGCGGGGAAATCGGGCGCTTCGGCGGAGGCGGGGTCTTCGGCGGGTGGTCCGGGGCGTGATCCGACACATTGGCTCCAGGGGCGGCGGGGCGCCCATCGTATGGCCGCTCATCACGGCTCTTGCCCCCGATGAGCCGCCCCTTCACCCGTACAGATGGGGCTCCCCGTACAACTTGACGCGATTTTGCGCCAGGTTTAGCAGGCAGGAGGGGACGCGGGGGACGTAGGCGCATACCTGCACAGCGCCTTGCGGTATGCCAACGCAAGGCGCTGCCCGTGCAGCAAGACGTTCGCCGTCGCTGACTGTTCCAGCTCTGTCACCATGTCAGGGTGAGGACGGCAGGCATGAGTCAAGAATTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGA # Right flank : AACTTCGCCACTGCGCTTAAGGAGCGTTCTGTGCCAGCAGGGCTGTTTGATATCGCGGGGGCACGGCGACTTCAGGGAGTCGTGCGTGCGGGACGATCGGGTCGTGCGGGCCCGTACTCTGCAGCTGCGCGTGGAATCGCCAGTAGAGACAAGGAGGGGTGCGGGGAGTGGAGGGTGGGGCACCGTGGTCGACGGCCTTGGTTCGACAACCGCTGTCGGCTCATGCCTTCGTGACGCGCGGGTGGCCTGCGGAGATGCCCGAGAGCAGACGAACGCCACCGGCGTTGTCGGAGACGCTGGCGGCGGTGACCAGCACGGCCAGGAGGAGGTGGAGTGTGTCGACGCCGATGTGACGTTCGCGTCCCGCGATCTTCTGCCAGCGTCCAGGCCCTTTCCTCTGCGTTCTGCTCGTCAGGCTGTCGGGGTGGGTTCGAGCAGTTCCCTACGGGCATCGGCCAGGTCACTCGGGTACGGCCACTGTCGGCGAGGCATGATTTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3109930-3108923 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRC01000001.1 Streptomyces cavourensis strain DSM 41795 Ga0264341_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3109929 30 93.3 31 .....................A.......C GCCTGACAGGCGCCCGTACGGCCCCCGATGA 3109868 30 96.7 31 .....................A........ AGCGACGTTGCGAAAGCGGCGACCGCCGTGC 3109807 30 96.7 31 .....................A........ GCGTGACCGAGGAGCGGCCACCAACCCACGG 3109746 30 96.7 31 .............................C AGCAACACCCCCCACCGCACCACCCTTCATC 3109685 30 96.7 31 .............................C CCGACGGCCGGATGGCGAAGCTCAAGACCGC 3109624 30 100.0 31 .............................. GGTGGAACCCGATCGAAGGCGGGGTGGGCGA 3109563 30 93.3 31 ...............A.....C........ ACCCGGAACCGGAGATCGTCATCGACGACAC 3109502 30 96.7 31 .............................A CGGAGAAAGCCGGGCACGGGCCGCCGCTGGA 3109441 30 100.0 31 .............................. TCGGCGGCCCGTTCGTCATGGCTGAGCAGCT 3109380 30 90.0 31 .....G.......GT............... GGCACGTCGTCCGCGGCTACGACGGGCTGTC 3109319 30 90.0 31 .............GT.............A. TTACGCAGAGGTCTCCGCATATGCCGCTGCG 3109258 30 86.7 32 ....G.A......GT............... ACCTCCACCCCAATCTCGTGCAGTTGGAGTGG 3109196 30 93.3 31 ...........A.................T TGAGGGGTACGTCCGCTCCACCCCACGCGGC 3109135 30 93.3 31 ........................A....A TCGCGTCGATGCTCGCGACGACCGTTGTGCC 3109074 30 96.7 31 ............................T. CGACGGGTGCATTTCGCATGGCCGGGGGCCA 3109013 30 90.0 31 ............A.T..............T AGGTGAGCGGTGGGGTTCGTGGAACGGTCTG 3108952 30 80.0 0 ...........A.G..........CCA..T | ========== ====== ====== ====== ============================== ================================ ================== 17 30 93.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GCTCTGGAGCCCCGGGCGGCGGAGTGGCTGGCGAGGGGCGTGAGCGTGGACTACCTGACCACCGCGCTCACGGCAGGCCTCCCGGCCGAGATCAACTCCCCGGTGGGCTTCCTCCGCCGCCGCCTGACCACCAAGCTCCCACCGAACCTACCCCCACAGACCACCCGCCCCACCCCAGCCGCTCCATCCGCCCGCGTCCTGGTGGAATGCACGGAGTGCGGCACACCGGGCCCCTCCGAGGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCGCGAAACCTGCGCCACCGGGCCCGGGGACCCGTCACCCACCCTGCCCGCACCACCCGATATCAAGACCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCGGACGGCACCCTATTCAGGGGAACGGGGGTCGGCCTTGGCAACCGAGGGGCAGAATCGCCTCTGGCAGGCGAGCAGTCCGCCAACGACGATCGGGCCCCGGCTCCCCCTCTCTGCGAGG # Right flank : CAACGAAGCTGGGCTCCTGCCGGTCGCGGCCCTCGGCGGATGGCGGCCGCCGGAGAGTGTCCGGCTGATCATGACGGCCCGCGGAGGGTCGGGCCGTAGCTACCTGGCCACCAGCCGTGACGGTGTGGATACGGCGCCCCGTATCATCCCGCCATGATCATGCTATCTGTTGACCCCGTCTCGCGGAGCTACGCCGATGGCCAGGCAGTGGGGCAGCTTCTGGTTCTCGCCGTTGCTCTGGTCCTTGTCTGGGTCGTCACCCGGACCTGGCGGCGAGGTCCGGCCCCGGACGGTCCGGACGACGTGGAGAGAGCCACCGCCATCGCCGTACGGCGTGGCAACATCGTCCGCGGAGTACTGCTGGCCGTAGCCGCCGCCGGGCTGATAGGGATTTTCACCGGCAGGGGATACCAACCTGCCGCAGAGGCGGCCCCCACCGCCCCAAAGCCTGTCGCCCAGTCGCCCTCCGCCACGACGGGGCCTGCGGAGATCAAGCGCGT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3940285-3939401 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRC01000001.1 Streptomyces cavourensis strain DSM 41795 Ga0264341_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3940284 29 100.0 32 ............................. CGAGGCCAGGGGGGAGGTGTCTTGGGAGGATC 3940223 29 100.0 32 ............................. CCGTACTCCGGGGAGGACCCGCCGGAGCACTA 3940162 29 100.0 32 ............................. CGTGCTCGCGTCCTGGAGGCGGTCCGCTCCGG 3940101 29 100.0 32 ............................. GCACCACGCAACCTCACCCGGTCCTGGACCAT 3940040 29 100.0 32 ............................. GTCAGGTTGAGTACGGGCTGCTGACGGACGAT 3939979 29 100.0 32 ............................. GGCTGGCACGCGCACTACCACGTGCTGCTGTT 3939918 29 100.0 32 ............................. CGGGGGAACGGGTTCCCGGCCGCGTGGGTGAA 3939857 29 100.0 32 ............................. CGGGCCCCGTACCGCTGGACCTGCGCGTCGGC 3939796 29 100.0 32 ............................. CGCCCGCGGCTGTCGCGGATGCTGCCGTCGGC 3939735 29 93.1 33 ........................A...A CATGGCGGCGGTCCCGCTCGGTTTCAAGCCCTC 3939673 29 100.0 32 ............................. TTGGAGCGCATGTTGACGGCCGGTGCGTGGTC 3939612 29 100.0 32 ............................. CCCACGTCCCCGTACTACGGGCTGATCGGACG 3939551 29 100.0 32 ............................. CGCATGACGGCGAGGACGCTGGCGTTGGTCCC 3939490 29 100.0 32 ............................. GTGGCCGGGTCGACCGGGCCGGGCGAGGTGGG 3939429 29 89.7 0 .....................A.AG.... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : AGAACACCTCGCCCGACACTCCGGCCCCGACCGCCCGCCGCATCCTTATGGAATGCACCGACTGCGGCCGCCCCGGCCAATCAGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACAGCACGAAGCCCGGTGAACTCCCGGCCCACCCCACTGAAGCCGCCGACGTCAAGGCCCGCATGAGTAACCTTCGCGACCTGCTCAGAACCGTCTGAGGCTGAAGCCTGCAAGGTCAGTTCGCGCCAGCAGAGAGCGCGGACACGTATCGGGGCACTGGCGCGGCAACCGTTCGCCTTCACAGTTTCCTGGGCAGATGCCGCACGGCCTTCCTTGAGGAAGGGGGCGCCCCCGGGGGTGGTTGGCGGGCAGAATGACCCCTGGCATGCCCAGTCTCGGGTAAGGGCTGGTTGCAACGCGGGAGAGATATGTCCGTTTCTCAAGAAGTAAGCAAAAACAGCCCCTCAGCCACATAAACCCGCAGGTCACGAACT # Right flank : GGCCGCCCGAAACCGGAAATCGATCATTTTCTGTCGAGTTCGAATCACTTTTGAACAACTGGCCCCTACAGGGCATTTCCGCATGTCAAATGCCCACATGCCCGCGATCGACACGGAACTCCTCACAGCGTTCCGCCACCTCTCCCCCACCGCCCGCACCCCCTGGGGCAAGCACGATCGGCCGACCGAACAGTGGCTCCCCCTGTGGCGGCACATGGCCGACAGTGCAGCCGTGGCAGGCAGGCTCTGGGACGAGTGGGTGCCCGACAACGTGAAGGAGCTGGTCGCGGACGTCTTCCCTCAAGGGGCCGACGACGCACGGCAGGTGGCCGTATACCTCGCCTGTGTGCACGACATCGGCAAGGCCACCCCCGCCTTCGCCTGTCAGGTGGACGGGCTCGCGGACCGGATGCGGGCGGCCGGGCTCGAGATGCCGTATCTGAAGCAGTTCGGGGCGGATCGCAGGATGGCTCCGCACGGGCTGGCCGGGCAACTGCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4098731-4097969 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRC01000001.1 Streptomyces cavourensis strain DSM 41795 Ga0264341_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4098730 29 100.0 32 ............................. GTGGCAAGGGACTCCAGGTAGCGTTCCGGGCG 4098669 29 100.0 32 ............................. ACGCACCGGAGGTGCTTGGCAGGATGCCGAGA 4098608 29 100.0 32 ............................. TTCCCGGGCGTCGCGCACTACATGGGCGACAT 4098547 29 100.0 32 ............................. CTTGCTGTCGCACGGGGAGCAGTTCGCCCCGT 4098486 29 100.0 32 ............................. GTGACGGCGCTGACGGCGATGCACGCGGAGGC 4098425 29 100.0 32 ............................. CCGCTCCCGCCGCAAACTCACCGCAGGCTCCC 4098364 29 100.0 32 ............................. CGTGAACGGTGTTCGGTTTGGTCCGTGCAGCA 4098303 29 100.0 32 ............................. GACGACAGCGCGGGGAGCCACTGCGTCTGGTG 4098242 29 100.0 32 ............................. GGAAAGGGCCCCCACCGAGGTGGGGGCCCAAC 4098181 29 100.0 32 ............................. CCCCGGCCACGGTTCCCGATCTCCGCCGTCTG 4098120 29 100.0 32 ............................. CAGTCCTTGGCGGCCTCGGGCGACGTCCATTC 4098059 29 96.6 32 ............................T GCCTCCAGGGCATACGTAGGAACCGCGCAAGT 4097998 29 86.2 0 ..C..................AC.....G | A [4097972] ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : AGCGGCCATCGACTCCCCCGTGCGCTTCCTCCGCCACCGTCTGACGACCAAGACCCCACCCCAACTCCCCACCAAAAACACCGGATCGGGCACCACCGCCCCCACCGCCTCCAGCCTCCTCGTCGAATGCACGGAGTGCGGCACCCCGGGACCCCCCGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAACCCACAGCAAAGGGCCCGGGGACCCTTCGCCCGCGCCCGCCGCAGCACCGGACATCAAGGCCCGCATGGCCAACCTCCGGAACCTCCTCAGAAGCGTCTGAGGCAGGCGACGGCGGTTCAGCATCGATTGGGCGGCCTCTTATCCGGGAATCGAGCCGCCAGCCTCGGCCAACAGGGGCAGAATCTCCCCAGGCAGGCCCCGAGTCCGGAAACGGCCGTCTGCACGGCGAGGGAGATATGTCCGTTTCTCAAGAAGTAAGTAAAAACGAGCCTCACGCCGCCTAAAACCGCAGGTCACGAACT # Right flank : CCTCCGTGGTCGATCCCCCACCGGGCAGTCGGCGCACAGGAACCCTGCTTGTCCGGGCAGTCCGCGAGGTCCGCTGAGTCCGGGCTACAGCGCCTCGCCGGGAATCGACAGATAGGCCTCGCGGAGGCGGCCCAGCAGCGGGTGCTCGGCGGCGAACCCGGTCCCGTCGATGGCCGCCAGGGGGCGGACGCCGATGCCCGCGTTCGTCGCGAAAGCGGCCACCATCACGCGGGCGTCCTCCAACGTCAGGTCCGCGTCGCGGTGTTGGGCGGGCGGCGTCGGGTGCTCGCGCAGCAGGGCCATGGTGACGCCGGGCAGTACGCCGGATCGTGGCCACAGCACGGTGCCGTCCCGGTCGATGAGGCCCACGTTCCAGGTGGCGCCCTCGGTCACGTACCCGTCGCGGCCCACGAACAGCGCGTCGTCGTAACCGGCGAGCTGCGCCGCGCGCCGGGCGTGCAGGGCGCCGAACAGCCCCGTGTGCTTGACCTGGGAGAGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4422671-4421360 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRC01000001.1 Streptomyces cavourensis strain DSM 41795 Ga0264341_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4422670 29 100.0 32 ............................. ATCGAGTGGTAGCCGAACCCCGGGTCGGACTG 4422609 29 100.0 32 ............................. AGGTCCAGGGTCGCGGGCCAAGCCCACTGGCG 4422548 29 100.0 32 ............................. TCGGCCTTGAGCCGCCGCCAGGGCCGCCCGCT 4422487 29 100.0 32 ............................. GAGTAGCCGCCGTACTTGTTGATCAGGTAGAG 4422426 29 100.0 32 ............................. GAGGACGGCCGGTACGACATCGGCGGCCACGA 4422365 29 100.0 32 ............................. AAGGCCACCGCCCAGATCAAGAGCAGCCTCGG 4422304 29 100.0 32 ............................. TATGTCGTCATGGCCCACCACCGCCGATGCGG 4422243 29 100.0 32 ............................. CGGGGGGATCAACCGGACGGACCGGACACGTG 4422182 29 100.0 33 ............................. GTCTGGGGAGAGCTGCTGCCCGAGATGGCGGTG 4422120 29 100.0 32 ............................. TGACGGACTGGGAAGCGGAGTTGGCGGTCATT 4422059 29 100.0 32 ............................. GTAAACCGCCCCGCACCCGAGTAGGTGCGGGG 4421998 29 100.0 32 ............................. CAGCCAGCAGGAGAGGGAGCCCGCCGACGACC 4421937 29 100.0 32 ............................. GCCCCGGACAGTCGCTCTGCGAACGCGTCGAA 4421876 29 100.0 32 ............................. CTCCGGCGCCCGTGGACCCGCGGACCGTTCAG 4421815 29 100.0 32 ............................. GCGTACGTCTCCCTGGCGGACGAGGACGACTC 4421754 29 100.0 32 ............................. TTCGAGGCCGGGTTCACGGATGAGACGGCCGA 4421693 29 100.0 32 ............................. GCCAGGGACAGCACGTCGGTACCGGACAGCTC 4421632 29 100.0 32 ............................. GACCAGCTCGGGCACGCGGCAGGCGACGCCGT 4421571 29 100.0 32 ............................. CTTCTTGAGGTCGATGACCACCAGGGCATGAG 4421510 29 100.0 32 ............................. GCGTACGCCAGGATCGGCGCACCCCGCTCCTT 4421449 29 96.6 32 .........................C... TCGCCGGGGAACTGTTCCACCACACCGGCAAG 4421388 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTGGTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CACCGCGCTCACGGCAGGCCTCCCGGCCGAGATCAACTCCCCGGTGGGCTTCCTCCGCCGCCGCTTGACCACCAAGCTCCCACCCCACCTGCCCCCGGCGACCACCACTCGCCCCACCCCGGCCACTCCCGCCGCCCGCGTCCTGGTGGAATGCACGGAGTGCGGCACACCGGGCCCCTCCGAGGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCGCGAAACCTGCGCCACCGGTCCTGGGGACCCGTCACCCACCCTGCCCGCACCACCCGATATCAAGACCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCGGACGGCACCCTATTCAGGGGAACGGGGGTCGGCCTTGGCAACCGAGGGGCAGAATCGCCTCTGGCAGGGCGAGCAGCCGACCCAACGGCGATCAACACGGTGGGGGATATGTCCGTTTCCCAAGAAGTAAGTAAAAACAGCACTCCGGCCGGATAAACCCGCAGGTCACGAACT # Right flank : CCGGCATACGTCGAGGTGGGACGGAAGGTCGTGTGGTCCCCGCGCGCGGGGCCCCACCCGATCCGGCTCTCCGCCACTGCCTGCCTCCGCCGGATTCGCGGTGGCCGGGCCTTCACCGTCGGCCTCTCGACGGTGAAGGCCCGGCAAGTGGGTACGGTTGAACGGCAGTCGGCCGGCCAGGCCGGCCGGCCCGAAAGGTGAGCGAGCTAGAGGAACCGCCCCGTTCGCGGTGCTCGTCGTCGCCTTCGTCCAGTGCCCGTGCCGGTCACGCCTTCGTGAGATATTCCAAGAGACGGAAGTTGGCGTTGCTGCCGTTGCTGACGAACTCCAGGACACCCAGCTCGGTGCGGATGAGACCGGCCTCCTCCTCCAACTCGGCCAGCTTGTCCCAGTCGCCGGAGTCGTTGAAGCCGAGGAAGAGCCGACCGCCGTCGGTCAGGTGCCGGGGGCCGTCCACGAGGAAGGAGCGGTGGGAGACGTAGCCGGCGTCCATGATGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4425215-4424279 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRC01000001.1 Streptomyces cavourensis strain DSM 41795 Ga0264341_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4425214 30 96.7 31 ...G.......................... GGGGCCTCCCGGATTGCGTCAGTTGTCGAAA 4425153 30 96.7 31 .............................T TCCAAGGGGCCTTGATCGAATTCATGGACGC 4425092 30 100.0 31 .............................. TCACCTGTCTCGCCGTAGCTAGCGGCGCGAG 4425031 30 96.7 31 .............................T GACCATGGCGGTGGGCCCGTCCGGCGAGCGG 4424970 30 100.0 31 .............................. CGCAGGAAGCCGGAAGACACGACAGCCCACT 4424909 30 100.0 31 .............................. ACATCGCCGCCGCCTCCGAAATCTTCGTGAA 4424848 30 96.7 31 .............................T CGCGGACACGGGCCTCGGCGCGGTCGCCACG 4424787 30 96.7 31 .............................A AGGGGCTCAGCTACGCGAACGGGGGAATCCG 4424726 30 100.0 31 .............................. GGAGTGCCCGGGGGTACGTCCAGCCGGTGGG 4424665 30 100.0 31 .............................. AGCACGGCGAAATCGGCCCCGTCCTGGGCTT 4424604 30 93.3 29 ...G........................G. GACCGTATCCAGGACGCCGAAGCCATCCA 4424545 30 96.7 31 ...G.......................... CCTGCCGCTCGGCCCGCCGCCGCTCCACCCG 4424484 30 90.0 31 ...GC........................C GGCGCCAGGAGGACGCCGCCGAGCGGCACGC 4424423 30 93.3 25 ...G.........................T CCCGGTGCCGCCCGTGTCGGGGGCG 4424368 30 93.3 31 .G.G.......................... GGACGCTGCTGGTCTACGACGAGATGCTGAC 4424307 29 83.3 0 ...G..................CA-....C | ========== ====== ====== ====== ============================== =============================== ================== 16 30 95.8 31 GTGATCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GCTGCCAGAGGAGGAAATCGCCATCAAACTTGCCGGATTGCCCGGCTGGGCACGAGAAGGGGACGCGATCACCCGCACGTTTGGGATCCGCTACCACGGCGGCGTCGCGATGATCGTGAACGTCGCGGACGTCGAACGGCTCATCGGCCACCACGCGGACATCGACCTGCGCTGGGACCACGTGAGGTTCCGCATCACGACACACGACGCCGGACACCGCCTCACCACCGCCGACTTCGACCTGGCCGCCCGGATCGACCGCATCGCGACGGCACACGAAGCGCAACCGCACAACTCTTGATCACGGCACCCGCGTTGTACCCGCAATGTTCGGTGAACGGCCTTTCGGCGGTGAAGATGAGGCACTCTGGGCGTGCGGCCGGGAGAAGCCCCGTCCGCCGCATTCAGCCTCGGGACATATACAGAAAGGGGATATGTCCGTTTCTCTGGAAGCAAGTAAAAACATCCCCTCAGCCACCTAAACCCGCAGGTCACGAACT # Right flank : GCCTTGACCGTCTCTCGGGTCTCAAGCTTCGGGTTTCGAGGCCGGTTCGTTCACTCTTTCTCGTGTACGGGTACGGGGCCCGGCCCGAAGCTTGGGCTCCGAGACCCGGGCATCGGGACACGAGGCCCGGGATTCGAGCGCCTTCTTTAACCGGTAGGTAAGGGAGGGGGTTTGGGAAAACCTCCCGCCCTCCCCACCCAGGTCACAGCTGGGGAAGTATGACTAATGGTGACGGCTTGCGGCGGAGTGTCACGAGTGCTTACGGTTCGAGAACTAAGCGACCCCGACAGGTGTTGGAAGCACCAGGCCGGGGTCTAACCGCAAGATCGCTAACGATGAAGGACGATCCCGTGGCTACCCAGCACATTAGCTCTGCCCTGCAACCCCCCGCACTCTCCGACGCGTACCCCATGGCGAATCCGGGCTACGGAAAGCGCTCGGCACCGGACCAACTACCCCGCAGCGCAAAGGATTTTGCCTTACTGCCAACGCGTGAGCGG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4434862-4434406 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRC01000001.1 Streptomyces cavourensis strain DSM 41795 Ga0264341_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4434861 29 100.0 32 ............................. CGGGCAACCGGGTGCAACCGGGTGGATCAACC 4434800 29 100.0 32 ............................. TCCTCATGCTCCGGGCCGCGCTCCGCAACCAG 4434739 29 100.0 32 ............................. CAGCTCATCTGGATGTGGAACGGCCTGTCCTT 4434678 29 100.0 32 ............................. CACCGTCCGATCGGGCTGTTCTCGTCGGCCAG 4434617 29 100.0 32 ............................. ACCCCGTTCGGAGACATGGGCTGGGCACTCCC 4434556 29 100.0 32 ............................. CTGCTGCACTCCAAGGGCGTCGCCGTGGTCCA 4434495 29 100.0 32 ............................. GGGAACCGAGTCAAGCGGGCCGCAGCCGAACA 4434434 29 82.8 0 .....................A.AGC..A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.8 32 GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Left flank : ACCCCGAGCCTTTCCTCGACCACTACCAACTCCTGCTCCCCAGCGGGTGCTTCACCGAGCCACTGCTCCAGCCGCCCTTCCTCCTCCAGCAGATCCCACTGGTCCTCGTCCAGCAGGTCGGCCAGTTCCCGGTCGGAAGCCTCCTCTTTCATGTACCGCTCGTCGTACTGCTCCAGAAAGCGACGCCACTCCTCGGGCGTGGTCAGGACGTCAGTAACTTCACTGTCTTCAGGCTTGGTTGTCTCATCCATGCGACTCATGCTCGCAGGCGCCTATGACAACGCCCCCTGCCTCCGGGGCGGCGGACGGGCGACGGGAGCCGCACCGACTGCACGTGGCTGGCGCTCCTGTGCCACGCGCAGCACCGAGGAAGGGCAGAATCACTCCTGGGGTATTCGGCTCAAGCAGGGGCCCTTTCCCGAGACCGGAGGGATATGTCCGTTTCTCAAGAAGTAAGCAAAAACAGCCCCTCAGCCACATAAACCCGCAGGCCACGAACT # Right flank : GAAGCTCACAAGGCCCACAGGACCCGCCGTACCCGAATGAAGCCATCGGGCGTCGGCTGACGGCCTGCCATGCCTCCGTGCCGCCCACGACCCGAGCACCGAGCACCGAGCACCGAGCACCGAGCACACGTAACGCCGTCCTCCTCCGACTCGTTGTCGCGAGAGGCGAGAGACATGGGTGGTCGACGCCCGCGGAGCCCAGGAGGCTTGGGAATCATGATCGAAGAGGGCGGCCCCGGGGGATGCCCGGCATCGCGGGAGGAGCCGCGCGTCGCGCACTCCCGTACGCTGCGGTTCTGGCTCGATCCGGCGAATATCGCGGTGCGCCTCGGCCAAGCAGGCCCCGTCGCCCGGACGAAGGCCGGACCGGCGGTCGCCTTCCAGGTCAACGACCCGTCGCTGCTCAGAAAAGTCGGCTGCGGGGAGGACACCTTCCAGGCCTGGAGCGCGGACCCGTGCCTTCGGGACTTCACCGGGAACGGTTTCGCCGGATCCGAGGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //