Array 1 44142-43887 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 44141 36 100.0 36 .................................... CGAAAAATTTGAATTGTTGCATCGCCACGCTCTAGA 44069 36 100.0 37 .................................... CTGGAGTTAAGGGTAGTTACGGCTTTAATCATAGTCT 43996 36 100.0 38 .................................... CTTAAATTGCTCAATGGCGTTATTTAGTGCGTTATAAG 43922 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 37 GTTTCAACTTTCTACTACCCCGCAAGGGGATTGAAA # Left flank : CTGACAAATGCTGAGGCTGCAACATGAAAAAATAAATACAAACTGCCCTACTGAGTAAAACTTGCAGCTAGTATATATCGAGCGATCGCGTTGCGTTTGGGTAAGGAGAGGGAGGAGTAACGAAAAAATAAGGATTTTACTCCCCTCTCCTTGTAGGAGAGGGGCCGGGGGAGAGGTCAAAACAGCACTTGTCGAACTCACGTTAAATAAGCGTGAAGTTTTACTGTGAAAAGTTACATGTAGTTCATAAAACCTCGACAATAACAAACAATCAACTATGATTATGTGATCAGCTTGATGTTTGGCAGGGAAAAGCGGAGGCAAAATCCCTGGACTCCCGCCAAAATCGCCAGAACCTTGACAAATCAATAATTACAGCGTTTTAACAGTTAGGGGAAATGCAATTATTTTGCAATAAGAGCGGCTGAAAATAAGCAAAATTTCTTCCCCGCCAAAATTCCTCACAGGAAGCTTGCTTAGTAATAGTTTCAGAAGGCAGA # Right flank : ATACCAGGGAAAGATGGATTAAGCGCCTACGAGTTGTGACTTGTTTCAACTTACTATTACACTTTATTTCCTCTCCCCGTTGAAGGGGAGGGGATTAAGGGGTGGGGTGCAATCTTGCTATAACTCTTAACTCAGCACTCAGGACTTTTTAATTTTTCCCATTGGGACGCTGAATAATTGTTTCTATCACCCGGCGCTTGGCTTTCGGATCAATTCCCACCAAACGCACATACTCATTGCTATATTCAGCTAAACTCGATTCTAAACTTGAGATGGCATCTGACTCTCCATCGATGTGGCTGTTAACACAACTTTGCCAAGAACCTGTACGGAAACGACGCTCATCTACATGTTCAATGCTGATTTTGTAACCTTGAGACAAAATTTGTCTGATCTGTTCTTGTGTCTCTAGGCTCAAATGGGTATTTGATGCTTTCTGTTTTGCAGAACCATTGCTTGACGGCTGACTACTAACTTCCTCAGCAGCAGGTGGTGCAGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTTCTACTACCCCGCAAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 1226473-1227015 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1226473 37 94.6 34 ...............C.................A... TACCCAATTCAGTTTGATCAAGAAGTGGGGGCTA 1226544 37 100.0 35 ..................................... TGTGTCGTCAATTATTGCGTCTTCCAATATTAAAC 1226616 37 100.0 36 ..................................... TATTCACTGCCCTCTTGCTTGCCATGTCTAAACCCA 1226689 37 100.0 35 ..................................... TCACTAGGTTGATCAAGAGTGACTTGACTAGCTAG 1226761 37 100.0 36 ..................................... TAAGAAAGTTGAAACACAGAAACGAGTTACCACAAG 1226834 37 89.2 35 G............A........AT............. CCTTTAAGAGTCTGATTTAATCCAGACATCCGCAT 1226906 37 86.5 36 C............AC.......A..........A... CCTAATCAGCCAACAAGTATCTATTAAATCGGTACG 1226979 37 89.2 0 .A...T........................GC..... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 94.9 35 AGTTTCCATAAACCATTTCCCCGCAAGGGGATTGAAA # Left flank : CCGATGTATAGGCGGTTGTTGGTGCTGGTGATCCAGTTGCAGAACTGCTCCCATACGTTGGCGCTTTGGCGCTGTTGTAAGGTTGCTGTCATGGCTTTATAAGTGCGGTTTGTTGTTTATGTATCAGGCGTGTTTGTTTTTGCCTGTGATAGTAATTTACACTGCTTTACAAAAGTTAATCAAGTGTTTTAAGTTTTGTTATGGTGATAGCTGTTATTAGCTTTGCTTATTTAAGCGTTCACTTGATACTCCCTGAACAAGAGCAAGCGATCGCTTGTATGATTAGTTCATTAACTTGATGGTTGACAAGCCGAAGCGGGGGCAATAACCCTAAAGACTTGTCAAAATCCCCAGAACCTTAACAATATAATAATTACAGCGTTTCAAGAATGCGGCAAGTTGCAAATAATTTGCAATAATAAAGGCTGAAAATGACTTTTTTTTCAACCCGTCAAAATGCTTCCCAGGAAGCTTGCTTTGTAACAGTTTCAGCACCGAGC # Right flank : ACAATGCAGCCTTAAAAAAATGTCAGGAAAAGCATAGGGTTTTCATTAACCATATATCCTTATATAAACAGACCTCCATCTAGTCGATGCATTCGCTGTGGGGAAAACCAGCAGCAAAAATGGCAGTCCTTCCATTGACTCCATGTTGAAGCAACTGGCATCGCCAAGAACGCCGAGAATTCGTAGAGTCTGCGTGAGTCCTACCACTGTTATACAAAGCCAAAAAATTTTCCTTCACCCTCTTGACTCTCCAGTTTACTGGAGACTTCACAATGAAATTAGTTGATCAAAGGAAAATTAAACATGAAACTTCAGCTAACAGTTCCTAACATGGCTTGTTCTGCTTGTGGAGAAACCATTACAAAAGCCATCCAAGCAGTTGACCCCACAGCTGAGGTTGGAACCGATCCAAAAACGAAGCTAGTCAGCGTCGAAACTCAGGCATCCGAAGCAGCAGTGACAGAAGCAATAATAGCTGCTGGCTATTCGGTCGCATCTAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCATAAACCATTTCCCCGCAAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 1655062-1655317 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1655062 37 100.0 35 ..................................... TATATCAAACTGTATTTTCAGTCGACGTTACTTGC 1655134 37 100.0 35 ..................................... AACTTTGATTAACTCCCTTGACAACTGCATCGTAA 1655206 37 100.0 38 ..................................... CAGCACGGGGGATTGGCGCGTCTTGTTTTAAAGTCAAA 1655281 37 73.0 0 ..................C........TTTA.ATCGT | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 93.2 36 GTTTCAACAACCCTCACGGTAGGCGGTGAGTTGAAAG # Left flank : CGACTCTACCTGTGCGTTCATCTAAATGTTTGTTAGCAGTAATTGTTTGGGTAAGCAAATGCTGCTTTTAGATGAGAAAGGACTCGCACCGAGACGCATGGGAAGTATAAGGTGTTAGGGTTCCAAACAACCCAGAACCTTAGCTCTTGACATCAAACTCTATCAGCTTGGTGTTGGGTGCCAGAGCGGCCTGTATAACTGAAATCTTTGATTTTGGTTTTACGAGGAACTTCTATCTCTTACTTTATAGCAAAGTAAGGGTACGGGTATACCGTCACGGTGGCTACCGAACACCACCCCCTAATTTTTATTTTTGGCAAGTCAAAGCAGAGGCAAAATCCCCTGGGATATGCCAAATTGCTAAAACTCTTATGTTGACTGAATTTGAGAATTTTCAAGGCGAATCAAAGTTTATTTATTGGCGATAGAAAATACGCTTTTAAGTAGACTTGCCAAATTGCCTGTGAAAAACAGTGAAGATAAGCGTTTGACAAGTCAGG # Right flank : TATAATTAGTTATTAGGGTGGTATGAAAGGAGCGCTGCGATCGCACGATGTAACGCAGCATTTTTATAGAAATAAGTCCTTTTCTTGACTGAGACTAACAAGGTGAATGCAAAAGCACTGAAGTAATCTTTAGTTATATAATATTAAGCTGGCTGTAACATTGTTGATTGGAGTCCATATCTGTGACTAATTTTCCTAGTAATTTTGGACAATAATTCTTTAAAACTGGTTTCAACTCTGGACAATAATTCTTTAAAACTGGATTGATAGCTGAAAGTTAGGGAAATACGTAAATTATGTCGTTTAGCACTGTCAAATTGGACAATAATTCTTTAAAACTGACAATAATGATTTAATGGACATGTCGATTAACTAATTATTTGTCGTCTTAACAAAATAATGTCGTCAAAGATAAAATGTTTGAAAACGTTGCTAAATAAGTGTTTGCAGCGTTTTTTAGTATGTCAACAATCAAGACCGAATTTAACATTTTAATTGTC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCCTCACGGTAGGCGGTGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 1684972-1685508 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1684972 37 100.0 34 ..................................... AGTCGGCAATGTCAAATAAGGAATTTTCTGCGTA 1685043 37 100.0 36 ..................................... ATGAAAGAATACGACCGTTTTGAGTGCCGGACGCTG 1685116 37 100.0 34 ..................................... AGCAAGGGGGCGGCGTAATCCCGCCAACCTATGA 1685187 37 97.3 36 ...............T..................... TGTGCGTAATAGATAGAGAATATTCAAAATCATTGG 1685260 37 100.0 36 ..................................... ATTATACTTTCAAATTTCAGGTGATACTATGTCAGA 1685333 37 100.0 37 ..................................... TCGATTCGATGCTTGCCTTTGTCAGCCCTTGTCGTGG 1685407 37 100.0 27 ..................................... ACTCTTCGTTAACAAGCTGATGCTTTG Deletion [1685471] 1685471 37 73.0 0 ..............TTAA....A.CAG.T.......A | C [1685504] ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 96.3 34 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : ATTTAACTCACTAATCCGAACCTTGAAAATATAATATTTTTATAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGAAAAATCTGGGTTAGTTTGGCGGTTGTCAGACCGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTTTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAGGAAGTAGGCTTTTAGCTGTAGCCGTTATTTATGACGGTGTGGACTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTGGCGAATCAAAGCGGGGTCAAAAACCCTGGAGACTTGCCAAACTCTGAAAACCCTTGTCATGTATTGAATTAAGAAATTAGTGTGTCAACTGATTTATTTTTTTCATTGTCATCAAAACCAGCTTTTTAACAGACTTGTCAAATAGACATCTGAAACGCTTGTATAACAAGGGCCTAAGCGGGAACA # Right flank : AATAAGTATATAGAGACTATTTACTTGCACTAACTAGGCTTTAGAATTGTTGAAGGGTATAACTGAGTTATTAGGAGGGTTGAAAGGAGCGCTGCGATCGAACAAAAATCAAAGTCAGTGGTTAAGCATAATCAACAATTCAATGACATTAATGTGTTAACAGTTGACTAAGTTAAATCGATGACATTAATTTGTTAAAAGCGACGCTAATTTGTTAATAACGACAATAATCTGTTAACAACGACAAATAATTAGTTAATCGACAGGACATATGGAGAATAGGGAACTCGAATCCCTGACCTCTGCGGTGCGATCGCAGCGCTCTACCAGCTGAGCTAATTCCCCTTAAAAGTGCTGAGTCTTGCTAACTCAACGCACTACTACAATATAATATTTTAACATTCTCCTGCTGTAGGCTGAGACTCTTTTTGTAAAAAGACTTCTTGTACTCGTTCAAGTTCTAAATCAGTCAAATAATCCACAGTCCAGTTACAGCAACG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 2100707-2100521 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2100706 37 100.0 38 ..................................... CTTGGGCAGGGCTGCCTGTGTAGACCCCGCGGCTTTTG 2100631 37 100.0 37 ..................................... CTCTTAGACTTACCTGGGGACTTTACAGATTGCCTAC 2100557 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 38 ACTTCTATTACCCCGCAAGGGGATTAAAAGCAAACCC # Left flank : TGGTACGTGGTTCTCATGGTCATATTACCAATTCTCCAGCTGATGGGCCTTTATTTATCACTCAACAAACTCACTTAGTCGAGCAAAATTCAATTGCAGCAACTGATGTTTGCTCATTGATTCTCAAACATTTAAAGTTAATGTAGATCAGATTTTTCGACTTATGTGTACATCGTCATGGAAATCACATCTTTGCTATTTACTAAGTTAGTACGAAGTTTTACTGTAAAAAGTTACATATAGTTGATAATACCTCGACAATCACGAATAAGCATTTTATGATTGTGTAATCAGCTTGATATTTGGCAGGGGAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAATCAATAATTACAGCGTTTCAATAGTTAGGTTAATTGCAAGTATTTTGCAATAAGAGCGGCTGAAATTAACCAAAATTTCTCCCCCGCCAAAAACCCTCACAGAAAGCTTGTTATCTAACGGTTTCAGGTTTCAC # Right flank : TAAAACCAGCCCTGCAAAAAGCTTTTGGGTACGATAGCATTAAATTTAGTGCAAATTTAGTGCATAAACAATTCAATGATCAACATCATTAGAGATATTCATTCACTCTCCAGCTTTAAACGCAATACACTGGAATTTTTACAGCAGATGAAGCAGACAGGAAAACCTGTGGTGCTGACAGTTAATGGTAAAGCTGAACTTGTGGTTCAAGATGCTGAATCTTACCAAAAGTTGCTTGATGCTTTAGAACGGTTAGAAGCTATTGTTGGAATTAAACAAGGATTGGAAGATGTAGAAGCAGGTAGAACCACTAGCTTAAGTGAATTTGAACAAGAAATGCAACAAAAGTATGGCATTTCAAGTTAGGACTACTCGAACAGCAAATGCAGAAATTGAGAAGGCTTATTCTTGGTTGAAAGAACGCAATCCCGTTTATGCTGATAAGTGGTTTCGGGAATTAATGGATACTATTGCAACTTTACAAGAAAAGCCTCGACGCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTCTATTACCCCGCAAGGGGATTAAAAGCAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 6 2663064-2662629 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =========================================================================================================================================================================================================================================== ================== 2663063 27 74.1 45 .CGCA...TGT................ AACCCTATTGACTATTTATTTTCTAAAGACCTGAACTTGAAATTT GG [2663053] 2662989 27 100.0 45 ........................... TCACGGGAATAATAACGCATTACGCAGCCCTTAGCCTTGAAATTT 2662917 27 100.0 235 ........................... CAGCAATGTAACTATAAGAAAAGTTTTGTAGGGTGCGTTATGGACTCTTTTCCTAACGCACCGCAAATCTCTGGCGGTGCGTTACGCTGGCGCGATAACGCACCCTACTGGCGTGGCAAGCCTAAAGTAGTGCAATAAAAATAAATCTTGTGGTGTGGGCATCTTGCCCGCACCGGACGGGCTAGAAGCCCATCCCACAAGAAAGGAATAATGCAACATTTTAGCCTTGTCATGC 2662655 27 74.1 0 ....AC.AAA......AA......... | ========== ====== ====== ====== =========================== =========================================================================================================================================================================================================================================== ================== 4 27 87.1 109 CACTTACTCCCTATTAGGGATTGAAAC # Left flank : TCCCGTTGAATTTGTGTTCATGCCAGCCAGTGCGACGGATATCCGGGGATTAAGTGCTTTACCCTTGAATTTACTGCCTGGAAGTCAAGTTTATGCTGATTGTGCCTATCTTGATTACACTGTGGAAGATGACTTGATTGAAACCAGTCAAATCTCCATGCAAGTCATGCGCTCATAGTAACTCAAAACGCCAAGATCCGCCTTGGACTCACTACATTAAACAGTCTATTCGTCATTACATTGAAACCGTGTTTAGTGGCATTACCAGTCGTTTTCACAAATCTATTCATGCGGTAACTTATGAAGGGTTTTTACTGAAGTTGCAAGCTTTTATTTTTGCCTACACTCTGCAACGAGCTTTTATTGACTAAGTTGCTTTCTTTCACTTTCTCTTCAACTATACTGAACATTCCTAATTGCACTTTCATCAAGGTTGTAGTTCTTACAAACCCTCATTTACCGTGCCTACACCAACCATATTCTTTTTTATCTTCTATTAC # Right flank : GGCGAAAAAACTACTAAAACCCAATACCCAGTTCCTAATTACCAGTCCCCAGTCCCCTTTACGCACCCATACCAGAATACCGCTTCAAACCTGCACGCCACAGCAAGCGATTTGCACCCAAAAATATTAATATCCAACCCACCATTGATAAAAATCCCCGCGTTACATCCACAGGTAGCCCCACTAAAAGACTCGTAGGAAAATCAATTAAATAAGGAAAAGGTGTGAATAAAACTATCGCTCGTACATTTTCAGGAAACACATCTAAAGGGGCAATCATTCCAGAGAAAAACAAAAAAAACAACAACCAAAAATTTTCTAAAGCGCTAGCCCGTTCCGTCCAAAAAGAAAACAAGGCAAGAGTATACTGAATCACAAACCTTAAAATAAAAGCTAGCGCTACCGCCAAGGTAAATAACAAGAATTGAATCAAACTAGGTATCCAAAAAGCCTGGGGATAGAGTATAAAAAACAACGCTATTAACAAGAATGCAAACGGG # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.35, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 7 2666043-2664100 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2666042 37 100.0 33 ..................................... ATTACGCCTGAGTTTTAAAAATTGTACCACACC 2665972 37 100.0 38 ..................................... CTATTGACCCTGGCCGTGCTGTAAGTTACATCAAGCAG 2665897 37 100.0 39 ..................................... CTGCCTGCCACTTGAGAACCAAATAGAACACCATGGTTA 2665821 37 100.0 35 ..................................... TTAATACTGAGCATGTGCTTAGCGATCGCCTCTCT 2665749 37 100.0 35 ..................................... CGGCGATCGCCCTATTTATTTGCTGGTGTAGCTCC 2665677 37 100.0 37 ..................................... TGCTACGTCGCTAGGCTCTAAAGCCACAGGCGACCAT 2665603 37 100.0 35 ..................................... CTTCAAGTGAGGCTCGCTGCTCAAATTGTTCTGAA 2665531 37 100.0 35 ..................................... AATTTGCTTTTGGTTGACAATTGCTTGAGCGTCAC 2665459 37 100.0 33 ..................................... TATACCACTGATTCTGGTACTGACTATGGTATC 2665389 37 100.0 36 ..................................... GCGCCCTAGATGAGTCTAGAATAGAAAACAACTTAA 2665316 37 100.0 41 ..................................... TACGACAAGAGGTATTTGTGGTAGTATTTTCTCTGATTGTG 2665238 37 100.0 33 ..................................... CCCCTTTTAGGATCCTACGGTTAATCTCACCAG 2665168 37 100.0 33 ..................................... ACGGCGGCAGAAATATAGATACCAGCAAAGACG 2665098 37 100.0 38 ..................................... TCTATGATTACTTGCAAGGCTTCCTGGTCATCCAGGGT 2665023 37 100.0 43 ..................................... ATTCAGCCACCGCACACCTTGACCCTCCAAGGTAGCCTGCCAG 2664943 37 100.0 37 ..................................... AACGTAGATGTTAGGGGAGCCTAGAACATAAGAATAG 2664869 37 100.0 35 ..................................... AAATTGAGCCAGTACAGTTTGTAGAGCGTAATACT 2664797 37 100.0 41 ..................................... CTTGTAAACTAATTTTTGCAAATACTGCTTGACAGTGATGC 2664719 37 100.0 34 ..................................... TCTTAAAATCACGGTTATCAACTTATCCCCCACA 2664648 37 100.0 33 ..................................... GGCAGCACTCCGTTTTCTGGCACTGGACGCTGA 2664578 37 100.0 36 ..................................... GCCAATTATCTTTTTCACCCTGACAACCTTCTTAGA 2664505 37 100.0 36 ..................................... TTGATTAAGCAAATAGTCAACTTGCGCCAACTTATT 2664432 37 100.0 36 ..................................... AATCGTAGGGTACGTAACACCCAGATGTGCTGCAAA 2664359 37 100.0 36 ..................................... GGAGTAGACACTTCTACAGGAGTTTCAACAGGTGTA 2664286 37 100.0 39 ..................................... CTGCTGTTATTCCTTCCTTTAGAAATTCAGCAACCACGG 2664210 37 100.0 37 ..................................... TACATTCCAAATCGTTGAAGCTGGCAAAAACTCTCGT 2664136 37 75.7 0 ..........................ACCCAA.TTG. | ========== ====== ====== ====== ===================================== =========================================== ================== 27 37 99.1 36 CTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : TACGTGAGCAATCTGATTTTTTGGCACTTGTGCGATCGTTATCTGTACCATTGATGGTAGTAATTGGCGAATCTAGCCCACCAAAATCACGAGAAGAAATGAATGCCATAGCAGCTTTACCAAAAGTGAAAAGCGTCGTCATTCCTGGTTCTTTGGGACTACACGAGGAATACCCAGCAGAGGTTTTAGATGCAGTCGGGGATTTTTTGTTCTCCCCAACTTAGCTAAATGATAAAGCACATAACATGACAGCAACAGTGTTTCTCTTGCTTCAGGCGCGGATGGGTAGGTGTTCAAAACGAGGTTTTGGCAAATGATGCTGAAATCTTTGCTGTGTAAAACTTTTGAGTAAAATAGCTTCAAAAGTAGCCGCGCACCTTATGTAGACTGGGTTTTAGCCATTTAGTCTCAGTTCAATTTTATTTTCACATGCTATGATTGCCTCATCCGCGCAACTGAACCTTGAAAACCAAATACAGATTGTCTTTCCGGCTTCCGCA # Right flank : TAGTTAGTCTCAAAGAGAGATGACACAAAGGTAGAGAAACAAGAAAATCCCTCCAGACAAGACAAAGAGGAGGGACAGATGTTAAATGAAATAGTTACGATCTATTCTGTCATAGATGACTTATTAAAGGCGATCGGGCATAAAGAGGATATTCGTTGTCAAATGAGTGATGCAGAAATTATCACAACGGCAATCATTGCAGCTATGTACTTTGGGAGTAATCATAGTCAGGCTTGTAGCTACATGAAAGACCATAAGTTGATGCCAAGAATGTTAGAAAAATCACGATTTAATCGGCGATTACATCATCTAGCAATGTTAGTGAACGATTTATTTCATCAAGTCGGAATGGCACTAAAAGAAATTAGTGAAAATACGGAATATCTTTTAGACTCGTTTCCTGTACCGATATGTGATAAAATTCGCATATTTAATGCTCATCTGATCAAATCCCCAGAATATCGAGGTTATATCGCATCTAAGAAACGTTATTTTTATGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 8 2692152-2691240 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2692151 37 100.0 37 ..................................... AACTGAGAGATTTAAATGATACTTCTGACCAGCTTTT 2692077 37 100.0 38 ..................................... ATCCTTTAATGAATTCCTGCTCTATGGATTCACGCACA 2692002 37 100.0 36 ..................................... ATACTCGTTGATACGATATCCTTGATACTCAGCGAT 2691929 37 100.0 36 ..................................... GCAATTGAAGCTGAAGCTAAGAAATTGAGGACGCTT 2691856 37 100.0 37 ..................................... CTAACATGCAAGCCATTGGGGTCTACACCTTGGAAGA 2691782 37 100.0 36 ..................................... TGAAACTTTTTCCCCAAATGCTTTTATTTGACCATC 2691709 37 100.0 33 ..................................... TTAAAACACTATTGGAGGGCCCGTCACTATGAT 2691639 37 100.0 38 ..................................... ATACAATAGGATTAAATCCAGTTGTACTAGAAGATGGA 2691564 37 100.0 36 ..................................... AGACTTTTATATTAACAGTTCCTCCCAAGAAATCAG 2691491 37 100.0 35 ..................................... ACTTTTTCGGAACTTATCTGTGAAAAAGCCTGTCC 2691419 37 100.0 35 ..................................... TTAGAAAAGTTTTGGTTTAAATAAAATTACCTATT 2691347 37 100.0 34 ..................................... AAATTCTAGGATTTTTAATGTCGAATACTTTTAA 2691276 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 36 GTTTCAACTTACTAACTCCCCTCACGGGGATTGAAAC # Left flank : GAGGGTTAGGGTGGGGTAAAACTAAGCCTAAACCGAAGTCAATAAACTGTTTTAGACAAAGTGTGTACACCATAGCCTTAATAAGGGGAGGGGTTGGGGGTGGGGTACGATGACTGTGGGAATTATAACTATTTATCAGAGCTTTATAATACCAATTCTCTACAATACGGCGACAAATTCAAACCTTGAAACCGAGATAGAATCTGAATTTCTCAATTGTGAATTGCGAATTGGTATAATGCCCGACAACTACTCGACAATATTAGATACACATATTATGATTGGCTAATCAGCTTGATGTTTGGCACGGCAAAGCGAGGGCAAAATCCCTGGAGTCCCGCCAAAATCCCCAGAACCTTGACAAATAAATAGTTACAGCCTTTGAGCAATGGGGCAACTTGCAAATTCTTTGCAATAAGAGCGGCTGAAAATGACCCAAATTTCTCCCCCGCCAAAACTCTTTCTGGGAAGCTTGCTCAATAATAGTTTCAGACTGAAGA # Right flank : TTGAACAAAGATGAATAATACTGAAGAGAGAACAGTAATTGATACTAAGTTGCAGTTTGAAGTAGTACGATTTTTCCCCCCTGCTCCCCTGCTCCCCTGCTCCCCTGCTCCCCTGCTCCTGAAGCTACTATCTCTGAATGCAACTTGGTTTGATTGCAGCGGATTTTCAGGAATAGCGATCGCAGAACTTGATTCGAGTCAAGCTTATGAAGTAGCTTACATCAACTGCGTACACTTGTAAATCCAGCTTTGGAAAAAATCTAGAACTGAATTTCAAAAGTATTGCAGAATTAATTGTTAATCTTAATAGCTTGCCAGGAAATTTTAGAATGGCGGTGCGTAACCACGGTGGCGGACATATTCATCTGATAGCGCAGCCATCTAGTAAGCAGATTAATGGTCTTTTGTTGCATTATTACTTAGGCTTTTAATTGCTAATTAGATTTTCGTCATCAACCATTAGTAATAATCTATTAGCTGTTTTTATTTATAATCACTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTACTAACTCCCCTCACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 9 3515564-3515159 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3515563 37 100.0 35 ..................................... TTAATCCCTTTCAGGTAAATAAAAATGAACATTGA 3515491 37 100.0 34 ..................................... TCCTAGTAAGCGATTGGTTTCATAGGCATCGTGG 3515420 37 100.0 37 ..................................... GCACGACAGCAACCAAATAATAGATTTTGATTGGGCT 3515346 37 100.0 40 ..................................... TCAATCTATCCAGACGGAGAAGTTATCGAAGGCGCTGCAA 3515269 37 100.0 37 ..................................... CCAGAAATGCAGCCTTTTTTTGACACATTTCTATTAG 3515195 37 75.7 0 C.........................AT..AAC.GTT | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 96.0 37 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTGATTATTTCCTACGATATTTCCGAAGATAAACGCCGCACTAAAATTCATAAAGTACTCAAGTCCTATGGTCAATGGGTACAATATAGTGTGTTTGAATGCTATCTCACCGATACTCAGTATGCAAAATTGCGATCGCGCTTGAACAAATTAATCAAGCCTGAAAGCGATAGCGTCCTCTTTTACTCCCTATGTGCCTGCTGTGTGGGTAAAGTTGAACGTATTGGTGGAGAAAAAATTCGTGATGACAGCATTTTCTTTGCAGAATGCGCGGATGGCTAGATGTTAAAAACGAAATTTCAGGCAATGAGCTTCAAATCCATGTAGAGTAAGAGTTTTGGAAGAAAATTTTTTTGAAACAGCCGCGCAGCTTATCTAGACTAGGTTTCAGCCATTTGTTGAGAAATTAATCTGACTGTTCTGTGTTATCATTACCTCGTCCGCGCTACAGAACCTTGAAAACTATATATGGCTAAGGTTTTAGGCTATTGCC # Right flank : ACCAAACTCCTAACTCCTAACTCCTAACTCCTAACTCCTAACTTTTATTTACCTTGATGAAAAATCAGACGATTGCCATCGGGGTCGTAGGCGTAAATTTCTCTACCGTGGGAAGCAATCGATATTTCTCCAGGTGGAGGACAACCCAAGGTAGTCAGGTGTGCGATCGCATCTTCCAAGCTACTCACTTCTAAACACAAACTTAGCTTACTTCTAGCTGAGTTTTCAAATTCCGACTCGTGTATTTTTTTGGGTTGAAAAATACCTAATCTCACACCAGGAAGCTGAAAATCAGCATACACATTTGGTATAAAACTGGCTGGTTTTTGCCCAAGTAAATTAATATAGAAATTTACTAAATTATCAAAATCAACAGATGCTATAGTAACGAGTGCGTCTTTATAGTCGAAAACCATACTAAGTAAGTCAGGGAAAATATTTTTCGTTTTTCAAGCTGAAGTATGAAGTATAAAGTATGAAATGACTCTACCTTGGCTCTA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 10 4202595-4202925 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4202595 37 100.0 36 ..................................... TATCTACTACATCCCTAGAATCTTCAAAATCTTTTC 4202668 37 100.0 37 ..................................... AAAAATAATTTAAAGTAGTGTGTACCTAGCTAATTGA 4202742 37 100.0 36 ..................................... TTGAATAGTCACAGCTTCAAAATTAGCTTTTAGATA 4202815 37 100.0 37 ..................................... GGACAGAATACCCACATCGAATGCCAAAACAAATTCT 4202889 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 37 GTTTCATCTTTCTAATACCCCGCAAGGGGATTGAAAC # Left flank : CATTTCATTAATCAAAAACCCTAATCGTTTCTCTCGGTCTTTGATAAGAGAAGGTCGAAATACATCATCTGGATCGAATCCAGTCAAACGTCTCAATTCTCCCTTGCTAATTTCCAAGCCTATTAAGTCCGGCTGCACAGCTGGATACTCCTATGAAAGTGCGAGTTGCCTCTTTATACCAATTTTATGTGAGGTTTCGCTTGATTCACTTCGGGGCTAGTCATAAATTGCCGCTACATTAATTCATAAAACCTCGACAATCACGAATAATCATTTTATGATGTTGTAATCAGCTTGATGTTTGGCAGGGGAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAATCAATAATTACAGCGTTTCAACAGTTAGGGTAAATGCAAGTATTTTGCAATAATAACGGCTGAAAATAACCAAAATTTCTCCCCCGCCAAAAACCCTAATAGGAAGCTTGTTTAGTAACGGTTTCAGAAGCCAGG # Right flank : CAATCGAATGAGAATAGCAGTTAGTTAAAACTGAAGAATTTCAACTTATACGAATTCTCTGTAAAACACTAGTATTCTCTTTCTTTGCGTACTTTGTGCCCTTTGTGGTTCGTTTATTCAGATCTAGCACCTTCCCTTAAGTACGCCTTGAACTTAAGTTCAAGGCTTATAGCTAAAGTCCGCTAAAACGGACTGAAATTTATGTCTAGTAATACTAATTAGAAAATAATTGTGACAGATGCCTTCAGAGGATGTTTGAAAAGTCTGTAGTAGTGTGTATGTATTAAATATTTGTTTACCCCACCCTAACCCTCCCCTTATAAAGGGGAGGGGACTAAATTGTCTGGTCTCCCCCCTTTATAAGGGGAGCCACTGCGTTGGGCGGCTCTGCCGACTTGAAGCAAGTGGCGTGGGACTAAGGGGGGTAAAAATGTGATTAATATCACATCCCACTTTTAAAACAACCTCTCACAAAACCTAGACGTAGAAAGCGATTCACA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTTTCTAATACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 11 4676642-4675362 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4676641 37 100.0 34 ..................................... TCCATATCGGAACTTCCTGTTTAACCCCACGAGA 4676570 37 100.0 38 ..................................... GGGGCAAGTGGCTCGGTACAGGGATTTGATTTTCCCCA 4676495 37 100.0 35 ..................................... TGGTACTGGTGCGCTGAATCTACCAACGCAAGACC 4676423 37 100.0 37 ..................................... ATTTATCCAAATTTCGGATATTTGCTGCTGCTTCCAA 4676349 37 100.0 35 ..................................... ACGTCTAATGAACTTGTACCGCTATTTCAATTAAT 4676277 37 100.0 38 ..................................... ATAAAGAAAGCACTCATCAGCTATCAGCACATATTTCT 4676202 37 100.0 36 ..................................... GTGATTAGCAAACCACTCATCAAAATTATCTAGAAA 4676129 37 100.0 36 ..................................... TCCTGTAGACGATGAAGAAAGAGTAGTATTTTTAAG 4676056 37 100.0 37 ..................................... TAGCAGGAGTAACAACAAAGGGGATTGATAAATTAGC 4675982 37 100.0 34 ..................................... TATCCCCAGCAGTGTAGTTAAATCCATCTGAATT 4675911 37 100.0 37 ..................................... TAACTAAAGCTAATGAGTACTTTAGCTTTGATAATTT 4675837 37 100.0 33 ..................................... AAAAATATATTATTTAGGTTTACGACTAACGGA 4675767 37 100.0 36 ..................................... GGATAGGTGCGACTGTTCGCACGTAATTTAATAAAC 4675694 37 100.0 34 ..................................... GTTCGGGTAAGGGGAACGTGATATTAGTCCAATA 4675623 37 100.0 34 ..................................... AACCTACGTAGTAATAAATGAATCTTGATGTCGC 4675552 37 100.0 40 ..................................... AGCTGCACGGGCTGTAGACGAGGAGTATCTTGGATTAGAG 4675475 37 100.0 40 ..................................... GACCTTTACAACTATCCCAAGAGCAAGAATTTTGATGATA 4675398 37 83.8 0 ...A......C.C................GG.....G | ========== ====== ====== ====== ===================================== ======================================== ================== 18 37 99.1 36 GTTGAAACTTTAATTAATCCCTATTAGGGATTGAAAC # Left flank : TATGAATCTGCCTCACGCAAAGGCAATGCCCGACTTGAAGCAACTGGCGTGCAAAGACGAGGCAGCGCCGTGGGCGGGTTTCCCGACTTGAGGCGACTGCCGTCGCAAAGGTACAAAGAAAAAGAAACGTAATTTTGGCATTTCATCTTCTGATTCAGCAACACCAGGTTTTAAATTCAAGGCAGGCGGCTAAAGTCTTGTGTAGCTGCGACTTCCAGTGCAAGAGTGCAAGATATGATATAACCTGATAACAGCAGTGTTTTTCTGGCTTCAAGCGCGGATGGGTAGGTGTTCAAAACAAGGTTTTGGCAAATAAAGCTTAAATCCTGATGCTGTAAGACTTTTTTGGCAAAACATCTTTCAAACTGCCCGCGCACCTTATGTAGACTGGGTTTTAGCCATTTGCTCTCTAGTGGGTCACAATTTTTTATGCTACGATTACCTCATCCGCGCAACAGAACCTCGAAAACCAAATATAGACTGTGTTTCCGCCTGTCGCA # Right flank : GTTCTTTCAAACCACAGACCCCAACGATGTCGTGATTAAACTTGTCCAGTAGATTACTGCAAATATCGGAGAAACCGCATGAATTATACCCCGTCATCTCCAATGGGGATCTCCCTTCGCTGTGCTAGCTTCACTGATTTGGATCTGCTACGACATTGGGATGAACAACCTCATGTAATTGACTCAGATCCTAACGATGATTGGGGTTGGGAGGTAGAACTTAAACGCGCCCCCGAATGGCGGGAGCAACTGATTGCTGAAATTGATGGTCGCCCCATCGGATTTATCGAGATTATTGATCCGCTACGTGATGATAGTCACTACTGGGGTGATGTTCCGCCGAACCTTCGCGCTATTGATATCTGGATTGGGGAAGAGACTGATTTAGGTCAAGGTTATGGTACCCAAATGATGCAGCTTGCTCTTGCTCGATGTTTTGCTGACCCGCTTGTGACAGATGTACTCGTTGATCCACTTACCAGCAATACCCGCGTTCACCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACTTTAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 12 6319370-6318456 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 6319369 37 100.0 34 ..................................... ATTTTATCCCCTGAGAATAATGGCCCGTAATAGT 6319298 37 100.0 39 ..................................... TGGAAAGCGATAAAGGACTCCCTTGATGCTTCCCAGAAC 6319222 37 100.0 36 ..................................... AATTTTTCGTCAATATCGTGAGCTTTAGTAATAGCC 6319149 37 100.0 36 ..................................... AACTGTGTTTCATTTAGTAATTGTCTATCAATTGAA 6319076 37 100.0 33 ..................................... TTGAAATGCGGCGAATGTACCACGAGGGTCTAC 6319006 37 100.0 37 ..................................... ACTAGTTTTACCTGGGTAGGATAAAGCGCTGTGTAAA 6318932 37 100.0 39 ..................................... ACTCCCAAAATAAAAGCATTGGGATAACGCTCCATCAAA 6318856 37 100.0 35 ..................................... AGAGCATTAAGCCCAGATGCCATTGATAATCTTAA 6318784 37 100.0 40 ..................................... TTTCATTGAAACAGCCAACGATTGTACATTCTTGAGTCTT 6318707 37 100.0 35 ..................................... AATAAATTTGGCGATAAAAAGGGACGCAATTTAAC 6318635 37 100.0 34 ..................................... GCACGAGTAGCGCATCGTACTCTGTCCATGCGTC 6318564 37 100.0 35 ..................................... ACAGAAAATTTACTAATCAGTACTCGCTGTAGCCA 6318492 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 100.0 36 CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Left flank : CAGCGTCAACCACTTTACGCCCAAGCCGATTTACACATCATCTTGCGTGAGGGTGATACACCTGAAGAAATCGCCAATCGAGTTATGGAAGCGATTCCCAGCGTTTTGAAACAGCCTGATTCTTACAATTAAGAGAGCGATCGCAATAATTAGGACAAGTCTACAATAATGAAATAGCATCTAGACATGGGAACTAGCATCTCCCTCATCCTCCTCATCTCCCTCATCCCCCTCATCCCCCTGCTACCTTCAAATACAACTCGGTATGACTTCAAGCGCGGATGGGTAGGTGTTCAAGACGAGACTTTGGCAAGTGAAGCTTAAATCTCGACTGTGTAAGAGTTTTGAGTAAAATTGCCTCAAAAGTAGCCGCGCAGCTTATGTAGACTGGGTTTTAGCCATTTCGTTTCAGTTCAATTTTAATTTCACATGCTATGATTGCCTCATCCGCGCAACTGAACCTTGAAAACCAAATACAGATTGTCTTTCCAGCTTCCGCA # Right flank : TAGATAAACTTTTTACCAAATAAATCACTGTAGCTACAGGAAAAAAAGTTACCAAATTTTTGTCATTTTTAAAATAAATTCTGGCAATTCTGGATTTCCACTAACTGTTTCAGGATTATCTAAAATCTCAACTTGTTGATGAGGACGGTAAATATAAACCTTTCGATTCTTGCGATCAATCAACCATCCTAGTGATGCACCGTTGTCAATGTACTCCTGCATTTTTTGTTGTAATTCTTGGAGGCGATCGCTAAAAGAGCGTAGCTCAATTACAAAGTTAGGACAAATTGGTGCAAAAGAAGCTTTTTGTGCTTCAGTCAAAGCATTCCAGCGTTCTAATTTAATCCAAGATGCATCGGGGGAACGAGTAGCACCGTTGGGTAATGTAAAACCTGTACTAGAGTCAAAGCCAATCCCAGTGCCATCTTTTTCTGTCCAGTAGCCTAGCTGTACAGCTATATTAAAGTTACGGTTGCCCGTATCAGAAAAAGCTGGTGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 13 7391858-7389909 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 7391857 37 100.0 38 ..................................... AGCACTAGGGGCATCTGATCGCACACGAGGAAACCAAC 7391782 37 100.0 35 ..................................... GGCTAATATCACACTATTGTTTGCTCAGCTGTCAA 7391710 37 100.0 38 ..................................... AAGATATTCTAGTACCTATTGAAATTACACATGGCTGG 7391635 37 100.0 34 ..................................... TGGAATTACTCGCATCAATGCTTCAACGTCGCTA 7391564 37 100.0 36 ..................................... TAGTTTAAGAGAAAATCTAGGTGTTGTTGGTGCGTT 7391491 37 100.0 34 ..................................... CTAATCAATCCAAACGTGTAAATTCCACTAGAAG 7391420 37 100.0 35 ..................................... CAGTATGCTTGCTAGTCGGCTTACGCTCTTCCCAC 7391348 37 100.0 34 ..................................... AGGAATTTTGCTTTAAGCTACTCAGCCACAGCAG 7391277 37 100.0 37 ..................................... AAGAAGTTTGTCATCTAATTCTTCTAGACGTAAGTCC 7391203 37 100.0 42 ..................................... AACACCAGAATAATCGTAAGCAGCACCACTGCGGAAAAGAAT 7391124 37 100.0 34 ..................................... TTCCTTGATTTTCTCTTCGCTTAGTGCGTTCGCC 7391053 37 100.0 34 ..................................... TTACAAGACGGAACTAAGATTCTTGAGATATTTC 7390982 37 100.0 36 ..................................... TTAAAGAACCTTTTACAAACCCATATTGATGATGGT 7390909 37 100.0 38 ..................................... TAGTACCAAACACCGGATATAAAAACTTTCCGGGATTA 7390834 37 100.0 35 ..................................... GGGCTTTCTATTCCTGGTGCTGCTCTTGATTCCCT 7390762 37 100.0 41 ..................................... GTGCTAAAAATTCGTTTTTGAATTGAACCAATGCATTGTAA 7390684 37 100.0 40 ..................................... TTATAAATAACGTTCTAGATACTTTTGACCGCATCGACGA 7390607 37 100.0 36 ..................................... AAAAATCCAAGAGATGGAATGAACGCCATTGAGTTG 7390534 37 100.0 34 ..................................... TGAAACTTAACCAGCAGTGCCAGCATTCATTGAA 7390463 37 100.0 39 ..................................... ATAGTAAACTGCATTGACTAACATTCTAGTAGTGATGCC 7390387 37 94.6 34 .............T..C.................... CAATCTCCAACAGGTACAGGTAAAAGTGTAGTTA 7390316 37 94.6 37 .............T..C.................... AAAACTTGAAATGCATGCTGTGGGCATAATGCCATAG 7390242 37 91.9 34 .............TA.C.................... AAGAAGGATGGCAGAACTGCCTCTCAGGTACTGC 7390171 37 94.6 37 .............T..C.................... TTGTGGTTGTTACAGACAAGAAGTTAGATTGCAGGCA 7390097 37 94.6 36 .............T..C.................... TTCAAGATTGTGTTTGATCTGACGAATTTCAGCTAA 7390024 37 94.6 42 .............T..C.................... CCATTTAGAAACTTCTGATTGATTAAAGCCTAATCCCCCGTT 7389945 37 94.6 0 .............T..C.................... | ========== ====== ====== ====== ===================================== ========================================== ================== 27 37 98.5 37 CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Left flank : AAGATACCATTTATTTTGGGAAAGGAGCATCCGCAGAAGTAACTAAAAATGATGAAATTTCAACATTGATACCGCTATATATGATTATGAACAGACTAAAAAATATACTAAAATTTTAATAGAACTTAAGTGTAAATGCGATATTACAGCATATTTCAACTTTATGAGGTACAGAAATACCCCCCTCATACCGTTTCACATTAAATTGGTAGTTAAGCCCCTCTCCGCCTCGGAGAGGGGTTGGGGAGAGGTTCATCGAACTCACGTTGTTTTAGGCGCGGATGGGTAGGTGTTCAAAACTAGGTTTTGGCAAATGATGCTGAAATCTCCGCTGGGTAAAACTTTTAAGTAAAATAGCTTTAAAAGTAGCCGCGCACCTTATGTAGACTGGGTTTTAGCCATTTGCTTACAGTTCAATTCTCATTTCACATGTTATGATTAGCTCATCCGCGCAACTGAACCTTGAAAACCAAATACAGATTGTCTTTCCGGCTTCCGCA # Right flank : ATGTGTTGATGATGCGGTGTTAGCTTTATGAATAATTACAACGAAATTTCTCAAAAAAGTTTAGAGGAACTGACCCCTCAACAAATAGGGCTTTTAGCTCAAAAAGCAGTTCAAGATGCGATCGCACGAATGCATTCATCAGGCATAGCAACTATAGAAGTTGATGAAGCCGGAAAGTTATATCACCGCCATCAAGATGGTCATCTCACTCCCATTGAACGATCTGAATAATGGCTCAATCCTTGAAATTCCACTTACTCCCTACATTTTCCAATTACTCATTAAACGTTTTATTTAATCTGATAGACGGTATAGATTGCTCTGCATTACCTCATGTCATTTTTAATTCTGTCGAATTCACGTTAATCAAGGGTTTTAAATCAGCATTAAAACTAGCCTTTTTTAGAGCATGAACAGTTCTTCCAGAATCTTGCACGCAAAATTGCCAACCTAAACGAACTAATTTGCGGGAGTTTTCATTTTGCACAATGCCAATCACT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : CTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 14 7931668-7933367 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7931668 37 100.0 36 ..................................... TTATTACTCAAACGACTACTCAAAACGGAGCATTTC 7931741 37 100.0 40 ..................................... ATCCTTTTATAGGATTTGGTATTATTTGGGATGTGTTGCA 7931818 37 100.0 34 ..................................... TTCTGTGGGCTGCGTCTGTGGACTAGTATCCATA 7931889 37 100.0 35 ..................................... TGTTACCCACCGCACCTGCCCATCAATCCTGTCAG 7931961 37 100.0 36 ..................................... AAGGCGATCGCCTAGTTTTTGGTAGTAAGGTGCAAA 7932034 37 100.0 34 ..................................... CTAATTTCCTAAAATTTCCGGTTTCATAAGCCAT 7932105 37 100.0 33 ..................................... GTAATCCGGCCCTTTAATATCACAATCACACAT 7932175 37 100.0 36 ..................................... CTGTGAGGGCGATCGCTTGTAATGTGAAGTGCGATC 7932248 37 100.0 39 ..................................... ACTAAACACTTATTCTCAAGACGAAGATGGGTTAGTCTA 7932324 37 100.0 33 ..................................... AGTTAAAGCTAGAGGATGAATCAATGTTTACAA 7932394 37 100.0 34 ..................................... GCTATTTAAGTTGGGCGATCTACTTGAGGTGCTG 7932465 37 100.0 35 ..................................... GAGACTTGATACTAACAGGTTTACCGTTTACCCAG 7932537 37 100.0 35 ..................................... CGAGGCGATAATCAAGGCTAACAGCGGGCTACAAG 7932609 37 100.0 41 ..................................... CGTAGCCCACTAACACTATCACGCATTGAGAATAATCTAAA 7932687 37 100.0 37 ..................................... TTGTCAGTGACATGAGCCGCGCCCATTGGTTCCAAAG 7932761 37 100.0 33 ..................................... ATGTAACCAGTACTACACTAAATACATTATTGA 7932831 37 100.0 35 ..................................... CTGGAGGGCTAAGAGAATGCCAAGCGTCAAGGTCA 7932903 37 100.0 36 ..................................... TATATGGGGATTAGGTTATTCAAACTCAAATACGGG 7932976 37 100.0 33 ..................................... GGTGAACAGGCGCTGGATTTCCTCCGGCGACAA 7933046 37 100.0 35 ..................................... GAAAACTCCCGAAGCTAATTGCACGATGCCAGCGA 7933118 37 100.0 33 ..................................... ACTAGTCAGTTGAAAGGCATTATGCACAGTTGC 7933188 37 100.0 34 ..................................... ACAGAGAATTTAATCCCGGGGAATTTACCTTTTA 7933259 37 100.0 35 ..................................... TGCCTTACGTGGTGGATTTGAAAAAATTCCCAATC 7933331 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================= ================== 24 37 99.9 35 CTTGAAATTTCATCTAATCCCTATTAGGGATTGAAAC # Left flank : TCGTATGAAACCATCCTGCTTCTTCCTTCCCCTTCCCCTTTCCCAATAAGTATCAGTCCGAGACTGGATACTTTGGTGCTGGTATCCTTCAAGGAAACCTGAAGTGCGATCGCTCTTGCAATTTCCCCTTTGTCTCCAATGTTTTTGATCAACTATGATAGCGATCGCATCCACATCACTACACTTAGTCCTTTTAGTAATTATTGCTACTTTTGCTAAAAATGAATAACTCAGTAGTTAATAACCTGATTTTAAAAGCACTTTTCTTGCTAGATGCGCGGATGGGTAGGTGTTCAAAATGAGATTTTGGCAAGTAAAGCTGAAATTTCCGCTGTGTGAGGCTTTTGAGTCAAATAGCTCTAAAAATAGCCGCGCACCTTATGTAGACTGGGTTTTAGCCATTTGCTTACAGTTCAATTCCAATCTCTCATGCTATGATTACCTCATCCGCGCAACTGAACCTCGAAAACCAAATACACACAGTCTTTCAGGCTGCCGCA # Right flank : TGGATACTATTAGCCTGAGTAGAGTGCATTAGGACTATCGTCCATAACGCACCGAGAATCAGCGGTGGTGCGGCGCTTGGCGACAACGCACCCTACCAATTCAGAATTTGGACTGATTCAGATCAATTGTGTGTACACCGTAGCCCTTCATTCCCCATCCCCAATTCCCTATTTGAAGCTGTGAATAGTTGAGTTTTTGGGATGCCTGCAAATTGCACTTATGGTAGTATCAAATTTGCTTGAGTTTATTCATGAGATCTACGCATGAGTCTGCAACAAGAGATAGAAGTTTTATTAAATCAGGCAGCTTCATTTCTGCCACCAGAAATACTAACAATCATTCAACAATCAATTGAAGAAGTAGCAAATTTAGGAATTGCTGAAAAAGCCCTCAAACCAAAGGATCGCGCACCCGATTTTACTCTCCCTAATGCTGTTGGACAACCTGTACAATTACAAAAACTACGAGCCAAAGGTTCAGTTATCATTACCTTCTATCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCATCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 15 8388935-8386750 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018288.1 Nostoc sp. NIES-4103 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 8388934 37 100.0 34 ..................................... GGTGAAGAAGGAACCGCAACTTGGTCATAGTCAA 8388863 37 100.0 37 ..................................... GGCGCAATCCAAAGTTTATTTACCTCCCGCACCAGCC 8388789 37 100.0 32 ..................................... GCGATGGATGGGCGGGGGCTTGAGTGATGCAG 8388720 37 100.0 34 ..................................... ACCTTGAAATATTGCAGGATCTAAATTACCACTA 8388649 37 100.0 34 ..................................... GCCGAGACGGCCAAATCATCATAGGTTGTAGGAA 8388578 37 100.0 37 ..................................... GGCTAGAATCCTTATTTAGTAAGGCTTCAGAACTTAT 8388504 37 100.0 38 ..................................... ACTAGCCCCAGCCAAAGAAATAGATAAAGAATGGAGGT 8388429 37 100.0 36 ..................................... TCTTGCTTTAAGCCATCATTCATATCGCTACCTAAG 8388356 37 100.0 38 ..................................... TTCAATATTTTGTTGAAGATTATATAAATAAGCTTTAA 8388281 37 100.0 40 ..................................... AAGTTGCACATGATATGGAAAAAGTGTGCGCTGAAGTTGA 8388204 37 100.0 34 ..................................... TAATTCTGGATAATCATATTTAACCAGAATTTGA 8388133 37 100.0 37 ..................................... AAGGTAGATATGATTTTAAGTATCGCGTCTCCGAGCA 8388059 37 100.0 38 ..................................... CAAAATCCTCATCTTTGAGAAGATTTTTAACCTCTATT 8387984 37 100.0 34 ..................................... CAATAGCGTGTTGTGTAGTATCGTTGAATCTTTC 8387913 37 100.0 37 ..................................... CCGTATAACGACGGTATTTCTACAACTTACATGAATG 8387839 37 100.0 39 ..................................... GATAAGTATGCTCTCTATCAATGCAGTATTTACAACAAC 8387763 37 100.0 45 ..................................... GAGGAAGTATCTGCGACTTTAGGATCTGCCATGACTACACCTCAA 8387681 37 100.0 40 ..................................... TCCAACCTGGGAGATATATCGATGTACGCCGAAGGTTATC 8387604 37 100.0 36 ..................................... AAATTGACATAGAAGATTTTCTAGCTAAATTCAAAG 8387531 37 100.0 35 ..................................... AATATTAACAAAAGCATCAGACATTTTTAGCAAAG 8387459 37 100.0 40 ..................................... TACCACAGAGGCGGCAAAAGTTTATCAAGCAAAACTAGAG 8387382 37 100.0 35 ..................................... AGAAAAGAACACCCTCAGCCAACATTTCATCTAAT 8387310 37 100.0 42 ..................................... CTTTACGAAGTCTTAGGTTAAAGTCGCGAGTTGCGACGCGGG 8387231 37 100.0 33 ..................................... GTGATACTCCTGTGGCATTTGCGAAAGCTGTCA 8387161 37 100.0 36 ..................................... CATCTGAGTTAATGGAGCCGACGGAGCTATGGTAAA 8387088 37 100.0 34 ..................................... AACGATGTTGTGCGTAAATTTGGCGGGCGTATGG 8387017 37 100.0 43 ..................................... ATATTTCGATGTATCCAGTTTTTCACCTGTGAATGCGTCAATA 8386937 37 100.0 42 ..................................... ATTAAAATTGATTCCGGTAGTACCAAATTTGCCATAAAAAGA 8386858 37 100.0 35 ..................................... GGTTAGAGGTAGAAAACGCGATCGCCCAAATTAAA 8386786 37 91.9 0 ....................T.....A.........A | ========== ====== ====== ====== ===================================== ============================================= ================== 30 37 99.7 37 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : CCGCGGCCCTGTCGGTTTAGAAGGACTGGTAACATATAAATATCAAATGACTGGTGATGGTCATATCGTAGCTACCTACACTGGGGCAAATGCTAAGCCTTTTACTCATCAAGATTTAGTGTAAGTAGGTCAAGGTAAAAAAGCTAACTAGTGAGGGTCGTCATTTGTCATTTGTCATTTGTAAGGGTTTCAAGCCTATTCGTAGTCTTGCCTGCGAATCTGCTTTCTGGCATTAATGGTATAACCTGATAATAGCAGTGTTTTTCTGGCTTCAAGCGCGGATGGGTAGGTGTTCAAAACAAGGTTTTGGCAAGTAAAGCTTAAATCTTGACGCTGTAAGCTTTTCGAGCCAAACATCTCTCAAAATGCCCGCGCACCTTATTTAGACTGGGTTTTAGCCATTTCCTCACTAGTGGGTCACAATTTTTTATGCTACGATTACTCCATCCGCGCAACAGAACCTCGAAAACCAAATATAGACTGTGTTTCCGGCTGTCGCA # Right flank : TACTCCCTATTTTTGCTTGTTTCCCATTCCCCATTCCCCATTCCCCATTCCCCATTCCCCATTCCCTACCCCGAAGGGGTTTACACCAATGCTTTGAGTAACGCCTGAAGTTTAAGTTGCACTTCGGCAAACTCTTTATCAGGGTCGGAACCAGCAACGATACCAGCACCAGCATACAGTCTAGCGCGATCGCCATCTATCAATGCTGAACGAATGCTGACAATGAACTCGCAGTTACCCTCATCATCTATCCAACCGAGAGGCGCAGCATATAAACCCCTCTCAAAATTTTCATAGCGACGAATTTCTGCACAAGCAATATCTCTAGCTGCACCAGCAACCGCAGGTGTAGGGTGCAGTTGTGAGATAATCTTTAAGGGGTGTACGTTAGCAGGAACTATGGCACTAATTGGTGTCCATAAATGCTGGATGTTAGATAATTGTCTGAGTCGTGGTGCTGATACTTGGGGTAACAAGCCTAGCTGAGTTAAGCGTTGAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //