Array 1 2186-3476 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOLL01000027.1 Levilactobacillus wangkuiensis strain 115-7 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2186 36 100.0 30 .................................... TCAGTGACATCATACAGTACAATTTGCTGT 2252 36 100.0 30 .................................... CAGCCACTTTTATATCATCATCAATCCATG 2318 36 100.0 30 .................................... TGGTTTTGGTTAAGGTTAAGACTAGGTTAA 2384 36 100.0 30 .................................... TTTTTCTCCAGTCTGTGGTAATTGCTTCTT 2450 36 100.0 30 .................................... AACTTTACCAAGGTAATTGAGATATGGTCT 2516 36 100.0 30 .................................... CAACCAAGTGGTTAACGCGGCCTACACTCA 2582 36 100.0 30 .................................... TCTTGACATAGTCGCCATCCAAATTCACCT 2648 36 100.0 30 .................................... ACCCAGTGCCTGGATGATTCCCCGTTTCTT 2714 36 100.0 30 .................................... ATATCATTACCTCCTAGGCACACCATCGTG 2780 36 100.0 31 .................................... TACGCCTCAATTGAAGGTGCTGCTTTTGTAA 2847 36 100.0 30 .................................... TTCTACCATTCCACATCCTGGACGAACCTA 2913 36 100.0 30 .................................... TACGCAAAACTTCCGGGACTTTACCGAAGA 2979 36 100.0 30 .................................... TCCAGAGGACACAGAGTTAATCTACGAGGT 3045 36 100.0 30 .................................... GCAACTACATCACGGCAAATAAGGCTATGG 3111 36 100.0 30 .................................... CCTGGGAAAGTTAGCTAGCCTGTTTGACGA 3177 36 100.0 30 .................................... CGCGCGGAAAGTCGACGGGTTCGTGCGCGT 3243 36 97.2 30 ...................................G TCCAGAACCGTTTGTTACTTGTGACCCGCT 3309 36 100.0 30 .................................... AGCCGGCAGCACGCTTCAAAGAGTCCACGA 3375 36 100.0 30 .................................... TTTTTAGGCAAAGAAAAGCCCCTCATGGCT 3441 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.9 30 GCTTTAGAAGTACTGCAAATCAATAGGGTCAAGAAC # Left flank : GACGCTCAATTTGAATACTTTATTTCAGCGAAAGTTGCAGAGTCAATTAATGAAATTACTGGCTGATGATGAGGTGGTGAAATTAGCGGATGGTCTCAGGGAATTGTTGTCTAAAATTTTGGCCGATAGCTACTTAATGGATGTCCCTCTGGAGTTGCCGGAAATTCCAGAGTTAGCGAAACTGGTCAAATTTAGTGGTATCCAGTTAACGCCAGACTTACAAGATGATGCCTATGGTATAATTGAGACATTAATCAAGGTACTAGTAGAGTTGAATGATCATCACATGATTGTTCTGACCAATGTTAGTCATTATCTTCAGGTCAGCCAGCTACAATTGCTGGTGAGGTTCATGGCTAACGTCGACTTGCCACTGCTTCTAATCGAATTTTCACCTAGTCAACGTAAAGACTATTTTAAAAAATGTGACTATCACTACATTGATAGCGATTTTGTTCTCTGGTAGTTTTTTATGATGAGATACTGGTGTGAAAACAACG # Right flank : TGACCGTGAACGTTAGGAGGCGAAACTAATGCTTTAGAAGTACTGCAAATCAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAAGTACTGCAAATCAATAGGGTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 803-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOLL01000028.1 Levilactobacillus wangkuiensis strain 115-7 contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 802 35 83.3 30 A....-....T..C..C...A............... TGACCTGGACGGTTACCTTAGGTATCTATT 737 36 97.2 30 ..........T......................... CCAGCGATGTTCAGTAAAGAAATTCATACG 671 36 97.2 30 ......A............................. TGCGCCAATCGTGCCACTTAGTACAATCAT 605 36 100.0 30 .................................... CTAATGTGATGCTTCAAAGTGAATACACTG 539 36 100.0 30 .................................... GTTGACTCATATACAGAAAAAGCACCGCTC 473 36 100.0 30 .................................... TTCGTGGGCGCGGTGGCCAAGACTTTCAAA 407 36 100.0 30 .................................... GTAGGCTCTGTAGGTACATGGCTTTGACTT 341 36 100.0 30 .................................... TCACGCTGTTGTGTCAGAACGTTTTCATCC 275 36 100.0 30 .................................... CGATGACACTTATAAGTTTTATTTTATTAA 209 36 100.0 30 .................................... TGCCCCTGAACAGTTACCGTGAACTTTTTA 143 36 100.0 30 .................................... TGTGCCTTAGTAAAGTTTTGACGAGATGAG 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.1 30 GTTCTTGACCCTATTGATTTGCAGTACTTCTAAAGC # Left flank : CAATTGGCCACTTGATCCACTTGAAGAAATCCATCAAAAATTTGAAATTAATCGTCGAATTGACGGAAGCCCCTCTGCTGGAGGAACTCCACCGTTACGTGTCGCTGTACCGGGCGTTTGACATCAAATTGAGCTTGGATGACGTCGGCACGGACAATCCGTGGTGCCCAGCTGTGCAAGATATCCTGCCCTTCATGGACAATATCAAGTTCGCCATGCAAAATTTCCGGCTCCAACACCGGCAAAAAGAATTGCTGCCGAGCCTCAGCTCCTGGCGTAAGATTGCCGATATGTACCAGCTCGGCTTCACGCTGGAAGGCATCGAGGACCAAAGCGACGTGGCGTTGGCAAAGAAATACAACGCCGGCACGACCCAGGGTTACTATTACAGTAAACCTGTGCCCTACGCTGGGTAATTGCATACTTAACCAAAATGAAACGACACGCTGGCCGGTTGGCTGCGTGTCGTTTTTTGTTCTATTACTTATTTTGTATCCTTG # Right flank : CTGTGCCTTAGTAAAGTTTTGACGAGATGAGGTTCTTGACCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTGACCCTATTGATTTGCAGTACTTCTAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 163461-163249 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOLL01000007.1 Levilactobacillus wangkuiensis strain 115-7 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163460 29 100.0 32 ............................. ATCTAAATTTAAATTACGAAAATATGGAAAGG 163399 29 100.0 32 ............................. TGAGGTGGTCGATGCGATGCGTCAGCTTGACC 163338 29 100.0 32 ............................. TCTTTTTAAAGGTGTAAGTCCATCTAACCTTA 163277 29 79.3 0 .........A......T.....C...TAA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTATTCCCCGCGGATGCGGGGGTGATCCT # Left flank : TAACTGAGCGAATTCATTTGAATGTCCATGATGCGTTTTCCGTTAAGCGTGGTGACACCGCTGATTTGAACGATGGTGCCTTTGAGAATAGTGAAGGCCTTTTTGTACTTGGTTTTAGCAAGAACAATTTTTTTCTTAGCTATCAAAAAATTCCCAGACTTGGCGTTGACGTAGCTGGTACTAGCCGCTGCTGTGACGCCACCGGTTAGGGCTAACCCGAGTCCAATTGCACCTATAGTAACTAGAATGTTCTTAAGTTTCATATGTAGCTCCTCCTAAAAGTGGCACCTTAACTACTCTAAGTATACGCTGTTGAGGTAAAAAAATCTGAGGTTAAACACTGAGAAATTGATGTTGGCTTAAAGTGGTTAAGGCTTTCGCTATAGCGGCAAAGAAATTGATTGTGGTTGGGGGAGGGCTGCTGTATGCTTGGAACACAAGTTAAATGAAAACCGGGTTGGGGTGATTTTTAAAGTGCGGTATGACGGCGTTTGCTTAGT # Right flank : TTGTAAGTCCAATTATTTGAATTAATGTGTCATTCAAAAGTAAGAAAGCTAAGTATTTCTCTATTTGTAGAATATGAGTACGAAAATATTTTTACATTTCGACAGTTAACGTTGTGCTATAATTATGGCGTGAGTTGGTAAGTAACAATCATTTCTAGATGGAGGGATATACAATGAAAATTAAACATCTTGTAGCTGCTGTCGCAGTATGTTTTGGTGTTGCGGGGATGGCTACGACTATATCAGCTGCACAGCCAGCGCGTGCCGTGACTACTAGTAATAAGAATTTTCGAAAGTATAAAACCATGCCGAAAGCTTTGCGTGGTACTTGGCAAACCAAGGGATACACTAAATATCGTAAGGGAATCAAGTCTAATGCTACATACAAATTTAATAAGAACTCATATACACTAATCATGAAGTTTAAAGGTGGTAGCGTAAAGTCTAAGACCATTCACTTCCCCAAGAACCAAGTTGGTGGTATGTGGTATGAGAAGCAA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGGATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //