Array 1 93098-92091 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSYX010000003.1 Lactobacillus intestinalis isolate 9.LIYmh, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93097 29 100.0 32 ............................. TTTTAACTTTACGATGTTTCAGTATGTCAAGG 93036 29 100.0 32 ............................. AATAACGTAATTACCATCACCGGTAGTTGGGA 92975 29 100.0 32 ............................. AGAGAGTTTTGAATGATTGATCTACTCCATTG 92914 29 100.0 32 ............................. ACAAGTCCCATAATTACATGAATTGGGTTAAA 92853 29 100.0 32 ............................. TGACTTAGCATCTACTACTTCAAAAGGCTTTG 92792 29 100.0 32 ............................. ACAAGTCCCATAATTACATGAATTGGGTTAAA 92731 29 100.0 32 ............................. TGACTTAGCATCTACTACTTCAAAAGGCTTTG 92670 29 100.0 32 ............................. ACATTGGGCCCTCCATCTATCTTTTTAGGAGG 92609 29 100.0 32 ............................. GATAAATTGGCTTCAGTTGCACGTGTTTTAGG 92548 29 96.6 32 ............................A AAGTGTTGTAGCTGGCCACCCGGCTATTTTAG 92487 29 100.0 32 ............................. TACCGACCCTGACTTAATTAAAGCAATCAATG 92426 29 100.0 32 ............................. ACTTTGTTGACTCTTTTATTTACCAAGTCGAA 92365 29 100.0 33 ............................. GTAAATTCATTGTAGTTAATGAATCCGATAATT 92303 29 100.0 32 ............................. ATAAACCCAAAAGACATACAGTATGTTTTAGG 92242 29 96.6 32 ........T.................... CAATATAATCAGTCTTTAGCCAATGCTGAGGG 92181 29 100.0 32 ............................. TATTCAGCGTCTTTATCTTCAGTAGTGAAGAT 92120 29 86.2 0 .....................A..T.TT. | T [92094] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATTGAAGGCTGCTAATCGTGAAAAAACTCAAAATAATCCACTAGAGCTTGCGATGGATTTACCTGAGTCAACATGACCTAGTTTATTCAAACTTGGACCATAATCTTAAGGTAGTCAATGAGGACTTTTTTTATTTTAATATGGCGGTCAATTTTCTAATAAAAAAATTGCTCCTTTTCTTTCAGAAAGAGGGTATGGCCCAATCTCCAATTGCTCGGTGAAATTATTGCTGAAGATGGTAGTTGATAAAAGTGATGCGGAAATTGTATAGTTCAATAGATGTAGTAAAAGCCCTAACTTGTAATAATGATCTTCATAAGAGTGCTTGTATTTTCTAATTATTTAATATAATAATTTAAGATTGTTATTATATGAGATAGCTATATATAGAAGAATATTTGATATAATTGAGTCGATGATTTGATGGGGAGGAAGTACAAACTAAAGAAAAATTGCTTTTCAGCAAATTTGAAATGGCTTAATGACGGCGTTTCTTTAGT # Right flank : TGAGGATGAGTCCTCAACAAGAAAAATTATAGAGCTATCAACATGATTTCCTAAAGGTTGTTTATGGAAAATCACTCTAAATGTCTCTAAAATGAAGATGACATGGATAGAAAGGGAGAACAATTATGAACGCAATTTTTGAAAGAAGAGCTGTTAGAGAGTATAGGGATCAAAAAGTTGATGATGAGAAAATCAAGAAACTAATTGAATCTTTTCAAGCAGCTCCGTGTGCACTCCATCAAACGGATGTGATGGAATTAAGTGTAATTACGGTTCCTGAATTGTTGAAAAAGTTAGAAGAAAAGACTAAGAATTCGTGTTATAACGCACCTTTGGTATTTATGATTAATACTAAAAAAGATAGTCAATTTGGTGAGAGGGATGCTTTTGTTGCTGCTGAAAATGTGATGGTTGAAGCATTTGACTTAGGCTTAGCTTCAGTTTACGTAATGGGTGGTGTAATCGCTCTTAATAAATTTCCAGATTTACAAAAAGAATTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203086-204764 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSYX010000003.1 Lactobacillus intestinalis isolate 9.LIYmh, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 203086 29 100.0 32 ............................. TTATTAAATCCAGATTGTCCTTTTGATAATCC 203147 29 100.0 32 ............................. CTAGGTTCGAGTCCTAGCGAGTCTGTTGCCAC 203208 29 100.0 33 ............................. TCCTCTTTTTCTTCCTCCAGCCGCTTAACTCTA 203270 29 100.0 33 ............................. AACTTCTTCTTCAGTCACGTCACGCGAAAAGTA 203332 29 100.0 32 ............................. AGCTCAGTAGAAAGGAGAAAGCATGGCATATA 203393 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 203454 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 203515 29 100.0 32 ............................. CTAGGTTCGAGTCCTAGCGAGTCTGTTGCCAC 203576 29 100.0 33 ............................. TCCTCTTTTTCTTCCTCCAGCCGCTTAACTCTA 203638 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 203699 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 203760 29 100.0 32 ............................. TAGAAATCATGTTGATGAAGAAGATAACCTGA 203821 29 100.0 32 ............................. AATAATTATCTGATCTTACCTAGCATTTTACC 203882 29 100.0 32 ............................. GCTATTAAGCAGGTTCAAGAAATGGATATTGA 203943 29 96.6 32 ............................C TAATGGAAGATTGTTTCAGGCTATCGATGAAG 204004 29 100.0 32 ............................. TCAACAGCCGGCACCATCTTATAAGGATTAAC 204065 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 204126 29 100.0 32 ............................. ACCAGCAGTGGCCATGCTCATTCCTTTTGATA 204187 29 96.6 32 .....T....................... AGCTCAGTAGAAAGGAGAAAGCATGGCATATA 204248 29 100.0 32 ............................. TTACTTTTGTCATTTTTAGTACCTCTTTCGTT 204309 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 204370 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 204431 29 100.0 32 ............................. AATAATTATCTGATCTTACCTAGCATTTTACC 204492 29 100.0 32 ............................. GCTATTAAGCAGGTTCAAGAAATGGATATTGA 204553 29 100.0 32 ............................. TCAACAGCCGGCACCATCTTATAAGGATTAAC 204614 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 204675 29 100.0 32 ............................. AACCAGCAACAACAGCTTCAGGCAAGAATTCT 204736 29 79.3 0 ...........G.AA...A....A..T.. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTATTCCCCACATGCGTGGGGGTGATCCT # Left flank : AAATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCAATAATTAAAAAGAATAATAAGTTTCTTGATAATTATAAGTTGAGTACAGTATTGTCAGAATATAAAATTGAAAATCAAAACCCGCATCATGCAGATTTTGATGCAAAAAGTACGTATCAATTAGCCTTGAAATTGATTGATGGAGGAAAATTAAAGCTTTAAAGTTTTCACCGGTAATGAATTTAGCTTTAGATAATTTTCAAAATTAATTTGAACCATTGTATACGATCAATTGGGAGAGGTCTTTCTGAGTATTCCGGAATTATGAGTAGTTAAAAATAGGTTTACATTTAAGTAATACTATAACTTGAAAAAGCACTTAAAGAAGTAAAAATATTTGTAATTAGATCTCTATAATTTTATCGGAATATAGGTATGCAATCTAGTATTATGAAAGAAACTAATGAAAATTAGAGATTTTGAATTATAGAAATGGCTATAGATCGGCCTTTGTTTAGT # Right flank : TGGTCTCCCAATGACTCTAAACTTGTGGAAAATTATATTTTTGGAGGTTTCTTCAGATGAAGAAAAAGTGGATTGCTATTTTATTAGCACTAGTTTCTTTAGTAGTATGTGGTACAACAAGTACTCAAAGTGTAAAGGCTAGTACGCCGTCAATTAACTCAAGCTACTGGAAGCGTAATCGCAAAGTAATCGTGACTAGAAATGTAAAGATCTATAAAATGCGTACTGCTACAAGACAAGTAATTAAGTCTAATTCTAAAACTTTAAGGAAAGGCACGATAGTTTTTATAACCAGAAACAAATCTAAAGTTTGGATTTTTAGAGGTAGAATTCCATCCATAGGTGCAGCTTCTTTGAAAGGATATACTTGGGTAGCTGTTCAGAATAATAGTAAATGGATTGCTACTTACAGTAAAAGTAATGTAAAGAAGTACACTAAAAAATCTGTAACATCTTCTAAAACAGTGGCTTATGATGAAGATAATCAAGGAGATGAAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGCGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 250990-251353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSYX010000003.1 Lactobacillus intestinalis isolate 9.LIYmh, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 250990 30 100.0 37 .............................. ATCTCCTTGTTGAAATTTTTAATATGATTTTATATTT 251057 30 100.0 36 .............................. ATGCAACGGGGATGCTCGAAAAGCACTTGTGCTTAG 251123 30 100.0 36 .............................. AATTACCAAGAATACGTTAACAAACGTATTTTCGAG 251189 30 100.0 38 .............................. TTTTCCCAGTCAACGGCTGGAACAGCTTCACCCACATA 251257 30 100.0 37 .............................. GATGGTGAATATGTACTTCTTGCTAAACATTTAGGGC 251324 30 86.7 0 ..................G.A...A....C | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.8 37 GTTTTTATCTAACTTAAGAGGAATGTAAAT # Left flank : AATTTCCAAATTTGGGTCGACGAGAAGATTTGGCAAATTTTGAAGAGGTAAAGATTGTTGATATAGAAGAAAAAGATGAAGATATACCCGTAAATCATAGCGCGTATATACCAGTTCAAATGTCTGAAGATGTGGGTCTAGAAAATGATGGTGTTGGAAATAAAGGGACACATTATTATTTAAATAAGAATTATAAGTTGGTAACAATTAGAAAAGGTCAGACACAACGTCGTTGGAATAAAGTTGAGGCAATATATGCTTCTGGATTTGTAGTTTATAAATCATATGTTGATGAAGATGGCAATGTAGTATTCTTAGTTTAGAGCTGTCGATGTCCAATAATCAATTTTTCACCTGGGATCGACAGGTACTATTAAGCTTGATATGATAGCTTTTCTGAAATTTTATAGTAATTTTTATCAAAAATAGGATTATATTTAAGATGGTCGACAGAATCGGGACTGTAAAGTATTGATTTGTAAGGTCTGTCGAAGGGAACA # Right flank : CGAAACAACAGGATATTAGTTAGTAAAGAAAATTTAGAGAATAGTGATACGAGGTATATTGAAGTGCATCTTGCATTTACTCTATAAAATAGAAAGTGTGGAAAAATGAATGACTATTTAGGTAAGTCTTTAAATCAATCTGAAGGAAATCACTGTGAGACGATTGTAGAACATACTAATAATTTGTTGAGGCAATATAATTTATTGAAACAAACGTATCCTGACATATTTCAAAACTTTTGGCTTTGTCAGAATAAGTTCAATAATATGTTGGAGCAGCCAAATATTCATGGCAAGGATGACTGGCGACTCTTAGAAATTGCTTGTGCATATCATGATTTAGGTAAAATGAATCTACGCTTTCAGAAAAAAGTAAAGGCCGGGAAAAGTTATTGTGAAGATGAAATTCCTCATGCCTTGTTAAGTATTACAATGCTTCCAATTGAGGAGTTGAAAAAACAATATACAAAAGAAGAACTCATAGCCTTAATTTTTGCAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 255865-256092 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSYX010000003.1 Lactobacillus intestinalis isolate 9.LIYmh, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 255865 30 100.0 37 .............................. TCTTTTTATCGATTCGAGTATCCTTAGTGATAGTATC 255932 30 100.0 35 .............................. TTTAATGCGTTTGGTACTAGTCGCTTGAGGGTAGT 255997 30 100.0 36 .............................. GTCCCTAACATCAAGTAAAAAGCGGCTCTCGCATTA 256063 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 36 GTTTTTATTTAACTTAAGAGGAATGTAAAT # Left flank : GCGTATGAGCCTTACATTATGGGATGGTAGTAATTATGTATATAATTTTGGTTTATGACATTGTAATGGATAAACAAGGCTCTAAAGTAAGTAGACATGTTTTTAAAATTTGTAAAAAATACTTAACTCATGTTCAAAATTCTGTTTTTGAGGGAGAATTAACCAAGGCACAGCTTGCAAGACTGCGAAGTGAATTAAATAGATGGATTAGAAAAGATGTTGATTCAGTAATTATATTTAAAAATAGAAATAAGAATTGGCTTGATAAAGAATTTATGGGACAGGATTTGACTGATTTAACATCGAATATTTTTTAAAATTAATCTGTCGATATGAGATATGTGGAAAAAACACGGAGATCGACAGATGAAAAGAATGCCCATATAATACTATTGTTGAATTATATCTAATAAGGTAAGTAATCTATATATGCTTTTTCGGTTAGGTCGACAGATATAGCTTTTGAAACTAGTGATATAGCAGGGCTTACGATGGCTAAG # Right flank : TGTTTACTAACACAACACTTATTCTTTCATTCCAAATGTTTTTCATGTTTTTATCTATTCTCTAAAATTCTAACTATAAAAGGAGCTCAAGAAAATTTTCTTGAACTCCTTTTTCTTTTATTTAGGCCAATTCTTAGCTAATTCTTTCAAGAAAGGTTGAATGACCGATCTTTGATTTTTTAGATAAGTACCATACAATTCGATATAATTGTCTTCATCCTTAATAGGTACTAAAATTCGATCATCATCGTCTCTTTCTTTATAACCAGTTGCTAAGGTTAGGTTCGTTCTAAAAACCGGAAAATTGGAATAGTGGGTTAATTCATCTAAAGCTGGCAGATCTTTTTGATATAAAAATTGTGCTTCTGGAATATGATCTTCAATTACTTGAACCCATGGCCCAATATCTTGAACTACTAAGAAGCTCAACCCGGCTAAATCTTTGAAAGTGACACTCTCCTTTTGGGCTAAAGGGTTCATTTTGTCAATGCGAACGGCTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //