Array 1 455260-456752 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKK01000001.1 Salmonella sp. S105-04183 NODE_1_length_635526_cov_128.999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455260 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455321 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455382 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455443 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455504 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455565 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455626 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455687 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455748 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455809 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 455870 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455931 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455992 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456053 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456114 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456175 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456237 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456298 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456359 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456420 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456481 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456542 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456603 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456664 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456725 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472884-474726 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKK01000001.1 Salmonella sp. S105-04183 NODE_1_length_635526_cov_128.999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472884 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472945 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473006 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473067 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473128 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473189 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473250 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473312 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473373 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473434 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473495 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473556 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473617 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473678 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473739 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473800 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473861 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473922 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 473983 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474045 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474148 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474209 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474270 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474331 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474392 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474453 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474514 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474575 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474636 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474697 29 96.6 0 A............................ | A [474723] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //