Array 1 37815-37426 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRV01000001.1 Skermania piniformis NBRC 15059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 37814 38 100.0 30 ...................................... CGATTGCGGCGTAGCGGGCGTCAGTTTCGT 37746 38 100.0 35 ...................................... TGTCGAGCCAGACTTATTCGTCGCGGAAGATCATG 37673 38 100.0 30 ...................................... TCGCAGCGCAGCGTCCAGATAGGTGTACGA 37605 38 97.4 34 .....................................G TCCGCCACACCGATCGAGATCAGCTTGGTTTCCA 37533 38 100.0 32 ...................................... CTCGATCATGAGGTACTGGAGCAGCCCGAGCT 37463 38 78.9 0 .........C.GA........G.......G....TCA. | ========== ====== ====== ====== ====================================== =================================== ================== 6 38 96.0 32 GTCCGAAGGTGAGTCTCGCTAAAAAGCGAATTGAAACT # Left flank : AGCGCAGCGCCCGGCGGGTGAGCCCAGCTCTGGGTTCGGCCGCGATTTCAGTGTTTTGGCGCCACACATGCCCGCAGCCGGTACAGCGGTAGCGGCGGATAGTGACCAGCAGTGTGGTGGGTCGCCAGCCGAGTGGTTCGTGCGCCAACCGGCGCACGACGGTGTCGCGGGAACGGCCTTCGCAGCCGCAGCGGCGGCACCAGCGATCGGGTTCGGCGACCCGGCAGGCCAGCACCGCCCGATCCGGTTCGACCCGCTGGCCGGTGACTTCGAGACCGAGCTCGTCCAAACCGATGAACGTGTCCAGATCCGGGCGGGCGAAAGTAGTAGCGTCGAGCACGTCGAGGTCTTCCAGATGAGGCGTGTGAGAACCTTCATCTTCGGGAGACCTCGACACCTATCCGGTACCGACGCGCCGACACCTACACCCTCATCTGCGATGAGCCGCTAAAAAGCGAATTGAAACGCCTCGTTGGCGAGGTCGCGGCTGGCGAACAGGT # Right flank : CCTGCTGGTCGAACCAGGCCGCGACCCATGGATGCCGGCCGTGCGCACCCCACACGGGCCCCGCCCAAACACCGATATCCAGCAGGATCACGCGCGGCCGTATCGTTCGCCCTCATCCGCGGCGAGCGGGCCCTCGAGATCATCGTTGGTCAGCTCGATACGCGTTGCGCGGATCCGATCAACGGCAGGCGAACCGGTCGCGTAGCCCGGGCGCGGACGATCCGATCTCACGCTCGAACAGGTCCTCGAGCGGCCGCTCTCGCTGGCCGCCGACGTCCCACGTTTGAAGGACATCACTGGTTACTGGTTGCCAAGCGGACTACGGTCGTGAACGGTGTCGGGGTCGGGCGAAGGGGGATTGCGGTGGCTCGGCGGTGGGTTGTCATCGAGACGGGGTCCAACCAGCAGCTGGTCTTCCAGACCAACAAGCAGCGACTCAATGTTGCTGCGTCACGGTTGATCTGGCGCGTCGGGTTCGAGTGGATCCCCGAGGCGATCGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGGTGAGTCTCGCTAAAAAGCGAATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 41068-39270 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRV01000001.1 Skermania piniformis NBRC 15059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 41067 37 100.0 34 ..................................... GAGCTGTGACCGTTGTGGCCGAGGTGGGCGTGCA 40996 37 100.0 32 ..................................... CCTCGTTGTTGACCTGCGGGACGATCTCTCGC 40927 37 100.0 35 ..................................... TGGCAGATCGCCCACTGTACATCAGCCAACGAGCG 40855 37 100.0 36 ..................................... CCGATGATGGCCAGCTGGAAGGCTGCAATGACGTTA 40782 37 100.0 37 ..................................... AAATGGGGTCGTCCTTCTCCTTGGCCGCCATCGCTTC 40708 37 100.0 31 ..................................... AAATTCCTCTGCTAGGGCCATGTAGTCGCCT 40640 37 100.0 37 ..................................... CGTACACCATCAGTCCTAAAAGGACTGCCGCTACGAG 40566 37 100.0 38 ..................................... GGTGTCCAGAGTCTAAGTCCTGAGCGTTGGTAGAATTC 40491 37 100.0 34 ..................................... CTCGTCGGTGAGCATGTTGTCACCGACTACCAAG 40420 37 100.0 52 ..................................... GACACCGACGGCGATGACACCGACGGCGATGACACCGGCGGTGATGCCGACG 40331 37 100.0 30 ..................................... CAGTGGCGGGGCATGTGGCGTTGGCGGCGA 40264 37 100.0 42 ..................................... CGCAGTCGAACCCGGCGAACCGGGTGACGAAGTCGTCGTCGG 40185 37 100.0 34 ..................................... TCTCGTGTCCCTCTCCATACTTGTGTTCGTGCTC 40114 37 100.0 34 ..................................... ACCCATCCCCACTTTACTAACAATCTTGCTACCC 40043 37 100.0 41 ..................................... AGTTTGATCCGTCGACAACCAACAACACACCACACACCCCC 39965 37 100.0 33 ..................................... ACGCAGTGCCCGAATCACGTCCGGGTCCTCGGT 39895 37 100.0 39 ..................................... GACTTAGACCAGCGGACATCGGCGGCACGATTACATATT 39819 37 100.0 36 ..................................... GTAGAGCTACCGTAGCTCACTACATCACATCGTGCG 39746 37 100.0 33 ..................................... CGGTGATGATCGACACCACCAACCAGACGCCCT 39676 37 100.0 38 ..................................... TGTCTCGGCGGAACGTTCACTCGTGTCGATGTAGACCG 39601 37 100.0 39 ..................................... CCTCTTCGAGCCATCCTTGGTGTTTGTCTCTGTCCGCCT 39525 37 100.0 34 ..................................... CCGCCGCGGAGGTGGAACGCCGTGATGCCGGCCT 39454 37 100.0 37 ..................................... CGTCTACCGGCGTATCTGCCGGTACCCAGAGCAGCAA 39380 37 97.3 36 ...........G......................... GTGTCGGACCATGTCGCCTCGTCGTCGGGGTGCAGT 39307 36 86.5 0 ..........................-.CT..C...T | C,C [39272,39277] ========== ====== ====== ====== ===================================== ==================================================== ================== 25 37 99.4 36 GTCCGAAGGTGAGTCTCGCTAAAAAGCGAATTGAAAC # Left flank : GTCAGCGGCTTCGGCGAGTACTGGTGCTCGGCCAGTTCGATCGAGAGTCGGGTCAACCGCTCCGGTGCCGACTGCGCGAATCGCCGAACCGCGTCGGAGGGGATGTCGCGGTCCGCGTCCCGAGCGAGAAGGTGGCGCCACGCCGCATCGAGCGAGTCCGGATGCGATACCCGCTCGTACAACGTCGCCGCAGAGATGTCAGCCACCGCCGCCGACGCTACCGCGCCCGGTCCGGCAGCGCTGTCCCCTGTTCGCCCGACATCCGAGTTCAGGCCGGCGCGATATCATTCCGGATCACGCGCGACGTGTTTGCGCGGGTCGGCGGGGCGAATCGGAGGTGGTTCATGACGCGTAGCCACCCCCCGATCGTGTGCAAGGCGCCTGAGCTGCGAAAACGGCACCTCGGCCGATCGTGCGACCGGTCGCCCCGGCTCGTTCCGGGCGATGGTGTGCAGGGAGCTTGCATCGTCGCAGGTACGAGGCTACGTTTTGGGCGAGGG # Right flank : CGAGGGTGTAGTCGGGGTCTGAAGCCTCCGGTCTCGAGTAGTGATCGGGCGATGTAGTTGGTGAGGTTGCGGAAGCCGAGGGCGGAGCCGCGGAGGTGTTCGAGGCGGCCGTTGATCGCCTCGGTCGGGCCGTTGCTGGTGCCGGGCCGGTCGAAGTAGGCCAGGATGTCGTCGGCGCGACGAGTCAGGGTCCGGGCGAGTGTGCGGATCTCGGTCAGGGCTTTCGGGACGCCGTCGCTGACCGAGTTGATCAGCTCGGTCATCAGTTCACGGCCGCGCCTGCGGTCGGGTTCGCGGTAGGCGGCGACCATCCGTTGGTAGATCTCCCAGGTCGCTTCGACCTGGGCGTGGGCGTCGTCGGCGAACAGCTGCTCGAGTCGTTCGCGTTGCCGGTCGGTGAGCAGATCGGCGCCGGTGTGCAGGGTGCGCCGGGCCCGGTAGAGCGGATCACCAGCGCGGCCGCGGTGTCCGATGGTGTCGTGCTGGACCCGGCGTCGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGGTGAGTCTCGCTAAAAAGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 242142-238050 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRV01000001.1 Skermania piniformis NBRC 15059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 242141 36 100.0 37 .................................... CGGGGCGGCCGGGTCGGCGTGCGTCGCGACCATCGAA 242068 36 100.0 38 .................................... CGCAACTGCCCGGCGACCGCCCGTGCGGTCCGCCTCGA 241994 36 100.0 37 .................................... CTGGCACGTCTGCGCACCGCGCTTGCTCTGCCCGCCG 241921 36 100.0 36 .................................... TAGGTGATCGCGACGCCGCGGCGGATCGCGGTGCCA 241849 36 100.0 41 .................................... GTAGGTGCCGCCGTCGGCGAGCGCACGGGCTCGGTACTCCG 241772 36 100.0 38 .................................... CGGCGGCCGTCACGACTCGCGCGTTGATGTCGGTCAAC 241698 36 100.0 38 .................................... CCCACGACGGCGCGGTCGAGCTCTCGGACAGTCGTGCA 241624 36 100.0 39 .................................... CGTTGCGGGCGACGAGATACCTTCCCACACGATGTACAG 241549 36 100.0 33 .................................... TGGGGCGGTCTGGGGGCGTTTTGGGGTGGGTAG 241480 36 100.0 39 .................................... ATCTGGCCCGGTGTCACCGACATCGGCGGATATCGGCAA 241405 36 100.0 40 .................................... CCTTCTTGGTGGCGCACCACAGCGCCAGATCGAGCAGCGG 241329 36 100.0 33 .................................... GTTCGACGAGGGCGGCGTAGCCAGCGGGGTAGG 241260 36 100.0 35 .................................... CGGAGGTGATCGATGCCGAGTCGAGCAAGGAATTG 241189 36 100.0 40 .................................... GGTAACAAGCTTGCCGACCAGTTGTTCGCGTTCGTTCGCG 241113 36 100.0 38 .................................... TAGTAGGTGCGGATCGGGACCACGTCCCGCTTGCACGG 241039 36 100.0 38 .................................... AAAATCGATGACTATTTTTCGGAGCGCTACGAGAGCAG 240965 36 100.0 38 .................................... ACAACCGCGGTCGCCGGTAATCTAACGGTGCTGACCAA 240891 36 100.0 38 .................................... CCTCGGGGCCACAACCACCGCCTCCTTTACTTATGGGG 240817 36 100.0 37 .................................... TCAGCCAGGCTGATACCGGCGTCAATGTGTCTCCTGC 240744 36 100.0 36 .................................... CTGGCGGCGTCCCTGGTGGCGTTGTTCCCGGCGGTA 240672 36 100.0 41 .................................... CGGAAGGTCGGCCTGTCCGGGCGGGACGCCATGGGCCTGAT 240595 36 100.0 35 .................................... GAACGCTTGCCGGGCGGTATTTGCCACGGAGACAA 240524 36 100.0 38 .................................... CCGCACCCGCCGCTACATAGGCCTCGATGTCTTCGCGG 240450 36 100.0 39 .................................... CCAAAGTGTGGATTTCGCCGGCCGGGTCGGTGATGATCG 240375 36 100.0 39 .................................... TCCCTCAGCGGTGTTCGCGACGAGCTTGAACTCTTTCGA 240300 36 100.0 35 .................................... CCCGGGTCGGGGGATTCGGCGACGAGCTGGGCAGA 240229 36 100.0 42 .................................... GGCGGCGGACGGTGAGGCGTGATCCACGGGCGCCGCAGCCTG 240151 36 100.0 39 .................................... GAGCGTTACGACGCGGCGCTGGCCGGGACGGCCCGCCTC 240076 36 100.0 38 .................................... GCTGCCGACCACCGTGCGCAGGATCTCCCCGGACATGG 240002 36 100.0 36 .................................... TTTGCCGGAGTTCGATTCTCCGGGGTAGCACAGGGC 239930 36 100.0 38 .................................... TCGTAGGCGCTCACGGTTGAGAAATCATGGCAGGTCAC 239856 36 100.0 39 .................................... AGGTGGAAGTCCGCGAACGCCAACCAGTCTGACAGGGTG 239781 36 100.0 39 .................................... GTTGATCCGCGACGCGACGGCGACATAAGGCTCGACCTC 239706 36 100.0 36 .................................... GGGTGCCGGTACAGATATTGCTATCTGCATACCGAG 239634 36 100.0 40 .................................... GACGTCGTCGATGGGACGGCGTTCGTCGCGCTCGACTCCG 239558 36 100.0 36 .................................... CGCGGTAGCCAGATCTTCGGCGGCCCGGGCCACCGC 239486 36 100.0 35 .................................... CGGTCCACCACGCGAGGGCATCTCGAAGTACTCGG 239415 36 100.0 37 .................................... AGGGAGATCCCGCCGTCGGCGTTGCGGCCGTGGATGT 239342 36 100.0 42 .................................... GTTGGCGGCGGCCCGGGTCCTTGTTCGGGCCGCCGCCTGCGG 239264 36 100.0 35 .................................... GCATATTCGGTGATGCCGGACGATTACACCGCGCA 239193 36 100.0 38 .................................... CGGTGACTCCGAATTGCCGGGCGAAGTACGCCACAGGT 239119 36 100.0 38 .................................... CGGAGGTGTCCGCATGATCCGCTGCATCTCATCGGATA 239045 36 100.0 39 .................................... GCCGGCCGGGGGTGGCGACGATCGACCACATACGCAGCG 238970 36 100.0 37 .................................... CCTTGCCATGCCCCGCCAAGCCGCGCCCGGCCCGGCC 238897 36 100.0 37 .................................... GCACCCACGGGAGAAACTCCCGCTGACTCCTCCGCGA 238824 36 100.0 38 .................................... TTCGAGGGTCCGTTGAGCTATCCATGCCGCCCATTGTT 238750 36 100.0 38 .................................... GTCGTGTTGCCACCCGGTGGAGGGGCGGAGGTCGGTGA 238676 36 100.0 39 .................................... CTTGGTGCAGAACTCGGGGTTCTGCGCCCCCAGCTTCAC 238601 36 100.0 36 .................................... CGGCTGGTCGCCTCCGACCTCGACCCCATCACCGGC 238529 36 100.0 40 .................................... GCGATTGGAGCAGTCCGCGGCCCAGCTACTCGCCTGGCGC 238453 36 100.0 38 .................................... GGGGGGTGGGATCACCTGGCAGTGATGGTGTGGCCGGT 238379 36 100.0 38 .................................... GCCGCGCTGGCCAGCGCGGTGCCGAAGTACCTCGCCAG 238305 36 100.0 39 .................................... TTGAACCGCGATCCGACGACGGTCCACAGCACGCCGGAC 238230 36 100.0 35 .................................... ATCATTTCGCCGGGCACCGCCGCGACGATGGGGAG 238159 36 100.0 40 .................................... TAGGGTGGAGCTGCCGGGAATCGAACCCGGCGGATTCGAG 238083 34 91.7 0 ...............--...C............... | ========== ====== ====== ====== ==================================== ========================================== ================== 56 36 99.9 38 CTGATCTCCGTCTATATGGCGGAGCAACATTGAAGC # Left flank : CGAGCTGACGCAGTACGTTCCGATGGAAACGAGGTAGCAGAATGGCCAGACGCAGGCATCTCATCGCCTACGACATCAGCGATCCGACTCGTCTTCGGCGAGTCTGCAAGGTGATGGAGGCGTACGGCGAGCGGCTGCAGTACTCGGTGTTCTTGTGCGACCTTTCGCCGCTGGAGCGCTCGCAATGGCGAACCGACATCCACGACCAGATGAATTACGGTGAAGACTCGGTCGTGATTATCGATATGGGGCCGCTGCACAGCTGCGCCGAAGTGACCACCCTCGGAGTGCCGAGACGATTGCCGGCTCCCGGATCGCTGGTCCTGTAGGTTCGACCAGTGGGTGCCCCAGCCTTCACCATGGGAGCGCTCGCATGCAGGTCACGTTGGTCATTGACACCTCGATAGTGGATAGTTTGCGTTATCGACGATATATCGACAACAGACCTCTCGCGAGTCGCTCCTATCTGCGCTGTTCACATGCGGTATATTTCAAGAGCC # Right flank : GGTGCCGACCGCGACGTCAGGGGAACCCCGATCGTCGTCGGCGCCCGAGGTGCTGCGCCGGAGTAGGAGCTGTCTGCGGCCCGGTCAGCTACACCGAGACTCGAAGATGCGTAGGTCGATCGCGTCGGCCATCGCCTGATACCCGGCGGCGTTCGGGTGTAGCTTGTCCGGCCCGGCGTAGCTCGGCGCGAGGGTGTCCGGCGCTGCCGGGTCACGCAGCGCTGCGTCGAAGTCGATCACGGTGTCCGACCGGCGCTGGTCGCGGATCCAGGCGTTGACTCGCTGTCGAACCGGTTCGGCGTAGGGCAGGGTGAGCGCGCCGTCGAGTAGGGCGCCGCCGGTCGGCAGGATCGTGGCCAGATGTACTCGCAGGCCGGCGGCGTGCAGTCGGTCGATCAGCGCGTTGTAGGCGGCGACGACCTGGTCGTAGTCCGCCCCGATCGGGATGCCGAGATCGTTGATGCCCTCGGCCACGATCACATCCGTCACTCCGGCCTTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATCTCCGTCTATATGGCGGAGCAACATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //