Array 1 494-644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRVJ01000013.1 Corynebacterium auriscanis strain CIP 106629 isolate Ear of dog 106629_sc13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 494 29 96.6 32 ..........................T.. TGCGGACAACTCCAGTGGAGCTAACACCAGGT 555 29 100.0 32 ............................. TCGGGGACGATTCCCGCGTCGGCGACGGTCAG 616 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GGGTGCCCTGCGTGCAGGGAAGGGAGGCG # Left flank : ACCACCACCACGTCCCGCGCAAGGCGCGCACCTTGGCTTGTGATGTAGTCCCGCAACGCACGGTCGGTACAGCCAGTGGCTTGGGCTGCGTGCAGTGCGCTGTAGCGGTGGTTCGCGATCAGGTCGAAAGCAGCAACAACAGCAGGATCGGGAGTGTAGGACATCATCAACACCTCATGAACAAATCAGGGTGTTGCATTCACCACTAGACCCCACCCGTGATTTTGTCGGAGTTCTGCTGCACTTTGTGTGACTGAGTGCGTGGGCTTGTGCGTGAGCCTGTGCGCGAGCTTGTTCGTGGGTGGTGGGCGTCGTGCCGCCACGCGGGTTAGCTTTCGGGGGGGGTATGTGGGCTTGTCCGTGGGCCAGGGCGCGGCCTTTGCGTGAGCTTGTTCGTGGGTGGTGGGCGCCGTGCCGCCACGCGGGTTAGCTTTCGGGGAGCGCACCAGTGATTCGCTGGTGACACGGATGGCACGGGCAACCCGAACCTGGTG # Right flank : GAAAGGGAGCAGCGGGGCGTCGTTCCACCAGAAAAGCGATAGCCGTGCCAGCCCCAGACATTAAAAGAACAATTAGGGTTGCCAGCGAATGCACAGGTAGAATTCACAACCATGAGTTCCTCCCTACCGAAACTGGATAAGAAAGCCTACGAAGACCAGCTGGAGAAGCTGCAGGCTGAACTAGTCGAGATGCAGCAGTGGGTCGTGGAGACCGGCGCGCGCATCGTGATCGTGATGGAGGGACGTGACGCGGCCGGTAAGGGCTCCGCGATTAAGCGCATCACTCAATACCTCAACCCCCGCGTGTGCCGCGTGGAGGCTCTACCCGCGCCGAACTCCCGGGAACAAGGACAGTGGTACTTCCAGCGCTACATCGAAAAGCTGCCGACCGCTGGCGAGATCGTGATCTTCGACCGCTCCTGGTACAACCGCGCAGGCGTAGAGCGTGTGATGGGTTTTTGCACCACCCACGAATACCGTCGCTTCCTGCACCAAGCTCC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTGCCCTGCGTGCAGGGAAGGGAGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 40214-38455 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRVJ01000017.1 Corynebacterium auriscanis strain CIP 106629 isolate Ear of dog 106629_sc17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 40213 29 100.0 32 ............................. TACTCACAATCACCACACCAAAAGGCAACACC 40152 29 100.0 32 ............................. CCTGGCGATGTGCTCCTACCTTTTCGGTAGTG 40091 29 96.6 31 ............................G TTGCGTCCCCAGCCCGGTATGTCACGTCGCC 40031 29 100.0 52 ............................. ACAACAACAGTAGGCACACCACTAAGCGAACAGTGCTCCCCGCGTGAGCGGG 39950 29 100.0 32 ............................. ATATGTGGAACGTAAGCAAGAAGTGGAGGGCT 39889 29 100.0 32 ............................. AACTCCTACTCGCAAACAAAACATCCCTCTAT 39828 29 100.0 32 ............................. CTCGATTGGGTACACAACGGGGTGGATAGATG 39767 29 100.0 32 ............................. AACCCACAGCACTACGTGGGGTTCAGCAACGG 39706 29 100.0 32 ............................. CACACAAAACCATCTCCGGCGGGTTTGTCGAC 39645 29 96.6 32 ............................G AGAATGGAGACGGTCTGGAGGGGTGCGCTTCC 39584 29 100.0 32 ............................. AAAAGCAAAAGCGCATGGAAACAGACGTAAGC 39523 29 96.6 32 ............................T GTGGAAATACGATGTGAGCGAGGAGAATGTAA 39462 29 96.6 34 ............................A GCATTGGCGGATTAAGGATGAGTTACTTCGCAAA 39399 29 100.0 32 ............................. CGGCTTCAAGTTGCTAGGCACCGTGACATCGC 39338 29 100.0 32 ............................. CGCTCCGTATGCAGCGTCCTACGAGTTCGGAC 39277 29 96.6 32 ............................G CTGGTGGACGAGACGGGGCAGGTGACTGTCCA 39216 29 100.0 32 ............................. TAGTCACTTATATCAATCACCTTGGCGATATG 39155 29 100.0 33 ............................. GTTCCACTGCTCGTGGGTGAAAACCGGCTCTGG 39093 29 100.0 32 ............................. GGGGGTTCGCTGTCGTTTGTGGTGTTGGTGTT 39032 29 100.0 32 ............................. CCGCATCGTTGTAACCGGGAATCTACGCGCGT 38971 29 96.6 32 ............................G GGCGGCGGGGGCAAGGGACACACCGAGGGCGG 38910 29 96.6 32 ............................G CCAAGGTACCGGTCTTGCCGCGGTTAAAATGT 38849 29 100.0 32 ............................. TCTTTTTCGTTGCTATCGTCGCCTGCGCGTCC 38788 29 100.0 32 ............................. ACATTCCCTAGCGTTGCGGTGGGGTCTACGCA 38727 29 96.6 32 ............................T AAAGAAGCACCTGCCAGGCGTGGGCGCCAACC 38666 29 100.0 32 ............................. CAGCGGGTGCGCGAGGGGCAGCGTATCGGGCG 38605 29 100.0 32 ............................. CCACAAGGGTGTTTTCCTGACTGAGGAGCACC 38544 29 96.6 32 ............................T TTAGACACGCTAACGCAACCTGGGATCTACTG 38483 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================================== ================== 29 29 98.9 33 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : ACTGGGCGGAGGAGGAAACACCGCAGTGATGGTTCTTGTTGTTACAGCATGTCCAGCGGGGTTGCGAGGTGACCTTTGCAAGTGGCTGACTGAGCTAACCCCGGGAGTGTTTGCTGGTCGGCCGTCGGCTCGTATTCGTGAGTTGATATGGGAACGAACAGTTAACCTCTGCAAGGACGGCCGCGCTCTGTTGGTTTATTCCGCCGCGAATGAGCAGGGAATGGAGTTTCGTACACACCGTCACCAGTGGGAACCCACAGATTTTGACGGCGTCACGTTGATGTTGCGACCGTTTAAGGGAAGCTCGAAGGGCAAAGATGCCCGTCGTACTGGATGGTCGAATGCTCGTCGCGCCCGGCGACAGTACCGCAAGCACACCTCCGGATAGGGACCGGAAGCATTGAAACTCTATATCACTTGGAAAAGCCCCCGCAGTAGAGAGCTCGGTAAAGTCGTAGCTAAAATGATGAGAGGGCTCACATCTGCACTGTTCAGCAAGT # Right flank : CTGTGGTTTAGGGGGCTGATGTGCATAATTTCCGGGAGTTGCTAGTGCGCGTTGATTCCGGAGGTAGCTACTGCGCGCTAATCCCCGGGAGTTGCGGGTGTGCGCTAATTCCGGAAGTTGCGAAAACGGCCCCGCTGGGATCCATCCTCCCAATGTGCGGGACATGTCGATTTTTTGCGAAAATTTCGACACGTTCGGCGGACATGTCGATTTGGTGTACATGTCAGCGCATTAGGGCTTCTTCTGTGTACCTGTCGGCGCCCCAGGGGGGTGACCCGGATCACCCAATCAGGGATGAGATCGTACTTTGTAAGGTCGCGCCCCCTGTGGTGTTACTTCCCAGCGGGTTTTGGAAGCCCCGCAGCCCACAGCGCCGCAGCGATCAGCGCCGGCTGCCCGAACAGGCGGGCGAGGCGCTTGCCATCGGTGTCCAGCCCGAACGCATTATTGCGTTCCGCGTACTGGGCGATGTTGCCAGGGAAAATTGCAGCGTAGAAGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //