Array 1 1992357-1989601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEXU010000002.1 Streptococcus sp. LPB0406 Streptococcus_mitis_Contig_002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1992356 32 100.0 33 ................................ TTGAACATCTGTGTGATCATCGCTGGGCTAACC 1992291 32 100.0 33 ................................ ATTCTTCCACCTCTTCTACTTCTACGAGTGGGC 1992226 32 100.0 36 ................................ TGGAACTGCTACCCTACGCTGTCCCATCTTGACCTC 1992158 32 100.0 35 ................................ CTCACAAGGTATTGCTACTGGTGCGTCTAATGCCA 1992091 32 100.0 34 ................................ CATTGACGACTTGCACGATAGTGTGAGCAAAGGC 1992025 32 100.0 34 ................................ TCATCTAACTTTAAGGACAAGGAAGTACCAACGG 1991959 32 100.0 35 ................................ CATCTTAATTGTGTCCCCAACACCATCCCGGGCAG 1991892 32 100.0 33 ................................ ATCTTGACTCCCCCACTTGGAAAGGAGTTCATC 1991827 32 100.0 34 ................................ CCGACATTCAGAAATATATTTTAAGCATTAATAC 1991761 32 100.0 35 ................................ TTGTAACTATCCCAGCTCGTAGATTTCAAGCTGTT 1991694 32 100.0 35 ................................ TCGACTGGTAGCGACGTGGAAACAGTAGCGGTCCC 1991627 32 100.0 33 ................................ GTATGCCAGGCGGTTTTCGTCTTTGTCGAATAC 1991562 32 100.0 34 ................................ CCGCGCTGATGACGGCTTGAAATATTGGACTGAA 1991496 32 100.0 35 ................................ ATTGGTACGGTCGCCGATCAATACACGCTCAAAAG 1991429 32 100.0 33 ................................ GATAAACTTCCCGATCTCTTCCTTGACGTCGTT 1991364 32 100.0 35 ................................ ATCAGATCGCTTATGGCAACCAAGCCCAGACGACA 1991297 32 100.0 33 ................................ CTCTTTCCAAAATCAATGGGGAATAATCCCCCT 1991232 32 100.0 35 ................................ GAGTAACCTTGAACGATAACAGAAAGTTGCGGAAG 1991165 32 100.0 36 ................................ TGTCTAACCACCTTATAGAGAGGTAGGTAAAAGGGT 1991097 32 100.0 34 ................................ CATTTATGGTTATATTATACACTCTCTTTTATTC 1991031 32 100.0 36 ................................ TGTCTAACCACCTTATAGAGAGGTAGGTAAAAGGGT 1990963 32 100.0 34 ................................ CATTTATGGTTATATTATACACTCTCTTTTATTC 1990897 32 100.0 36 ................................ AAGCTGGATTGATAACGATCCATGTTAGGATCAGAC 1990829 32 100.0 36 ................................ ATCATCGCTAGTTTATATGGTTGGCGCAGAAAATCC 1990761 32 100.0 34 ................................ CAGCTTGCTTGTATAGTTGGCTGTCGCTATTTAC 1990695 32 100.0 34 ................................ TGTACGGACTAGTTCGTAAGTTACACCGTCTTTA 1990629 32 100.0 35 ................................ CTTTGCTTTTTAAAAATAAAAAAAGCCGTATAAAC 1990562 32 100.0 34 ................................ TTTATAATGCAAACGAAACGGCGTTTGAAACCTA 1990496 32 100.0 35 ................................ TTAATGTTATTAGTCATTTTATCTTGTAACGTGGC 1990429 32 100.0 33 ................................ AACTAAGTCATGCTTTTTCATTTGAACATAGAG 1990364 32 100.0 34 ................................ CGTTTAGTTAGTTTAGTCACTCCCTCATCCTTGC 1990298 32 100.0 34 ................................ TATTCCGTTCGTCCTGCAGTTTCACATCATCATT 1990232 32 100.0 34 ................................ TGATATTGTTGTCCATAAACCTGAAAAGAACTCT 1990166 32 100.0 35 ................................ TGGCTCTTCCTCAAAGATCAAAGTCACGCGTTCGT 1990099 32 100.0 35 ................................ TTATGGCACACGGAACGGCACGAGCTTTGTCGTCC 1990032 32 100.0 36 ................................ TTTGGCGCTAACGTTCTCTTTGCTGAAATTCCGGAC 1989964 32 100.0 36 ................................ ATGAAAGAAAGTCGGTTTTGCAGTACGCCGGCTTTT 1989896 32 100.0 34 ................................ CTCGCTCAATTTCAAAGCCTGCTTGTCTAATCGT 1989830 32 100.0 33 ................................ TTTCAACCATTGGGATCAACCAAGCCCTCTTAT 1989765 32 93.8 35 ............G....A.............. AGCTTTTGCATTTTTGTTAGCTTCATTCACTTTAG 1989698 32 93.8 34 ............G....A.............. AATTAATTTCTGTAATTCAAGTGTTCCCATCTTG 1989632 32 84.4 0 ..............T..AA....T.G...... | ========== ====== ====== ====== ================================ ==================================== ================== 42 32 99.3 34 GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Left flank : CAAAAGCTATTCGTGGGGAATTAGAGTCATATCCACCATTTATGATATAGGAGTTTATATATGATGGTACTGGTGACATATGATGTCAATACTGAAACAGCAAAAGGCAGGAAGCGTCTGCGACATGTTGCAAAACTATGCGTTGATTATGGCCAACGTGTTCAAAATTCAGTATTTGAATGTTCAGTTGCTCCCGCAGAATTTGTGGAAATAAAGTCTAAGTTACTAGATATTATTGACCCTGATTCCGACAGTATTCGATTTTATTTTCTTGGAAAAAATTGGCAAAATCGAGTGGAGACTATTGGACGAGATACAAGTTATGATCCTGATATAGGAGTATTAATACTTTAAAATAAGGAGTGCGAATCGAAGTTGCTCATAAAATAGCAGGAGTTTCGCGCAAAAAATTAGAAAAATTAATGGCAAAATTGGATTTTAGGGAATAATAATTCCTTTGTATTAATCAATTTTAGCCATAAACGGTGCAACTTTGCGCT # Right flank : TCATTAGCAAAAAATTTTGATATTACAGATCAGCTCTATAGATCTCCACTTTTTCTTTGACTCTCCTTTCTTATTTCTCTAAAATAGTAGGTATGTGAAGGGAAATTGATATGAAAAAAGGTTTGGTAATTGTGCTTTCTGCTTTGGTCTTGGCTTCCTGCGGTCGTCCTCATAGGACGGTGTCGCCTAAGAGTTCGGATACCAAGCAGACCAGCACTTCGGAAAAGAAACAGTCTGGTATGGATTTGAAAGCCATCAAGGCTAAGGACTACTCGAGTATCAAGGGGACTTGGATCGATGGGCGTGGCAATGAGCTGGTCTTTGATGACAAGGGCTTGGTCAGCGAGGATGTTGAGCTTAATGCATCGAGCTTTAAGCAGAAGGACCAGATCGCTGAGATGACGGTTAGTGCCAAGTCGGGTGTTGGAGGCTACGGTCTCTTGCTCCTGCCAAAGGGTCAGAAAGCTGGCAAAGACGATGCTTCGGATAAGTCCAAGGAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1492862-1494875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEXU010000001.1 Streptococcus sp. LPB0406 Streptococcus_mitis_Contig_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1492862 36 100.0 30 .................................... AGCGGATTTCTTATCCTACACGTAAAGGAT 1492928 36 100.0 30 .................................... AATAATTTTTACGCTCCCAGTTCCAAATAG 1492994 36 97.2 30 .A.................................. ATATTTTTATCAAACGGGTTACTAGAATAT 1493060 36 100.0 29 .................................... GGCAAATAAAATTACTCGCTACTTATCAG 1493125 36 100.0 30 .................................... CATTGGCGATATTGTCAATCCATTTATCAG 1493191 36 100.0 30 .................................... ACGATAATAAAGGAGTACAAAGAACCGTTA 1493257 36 100.0 30 .................................... CTGAATGGTTAGAAAGTCTAACAATGTACT 1493323 36 100.0 30 .................................... TTTTAAATTTGAAGATGAAAATGTTGCTTA 1493389 36 100.0 30 .................................... TTCATAATCCTTATATTCGCCATCTGTCAA 1493455 36 100.0 30 .................................... TCACGGTCACTTCGTTTAACCGCTTCAGCT 1493521 36 100.0 30 .................................... AGCTAATCTTGAGAAAGAGTTATCCACAGA 1493587 36 100.0 30 .................................... TCAAGCCTATGCCAATGCTTGGCAGTTCTC 1493653 36 100.0 30 .................................... GAAAAGAACGTAAAAAAAGCCCTGGAGGAC 1493719 36 100.0 30 .................................... CTTTATCATATCGAACGCACAAGAGAACTA 1493785 36 100.0 30 .................................... TAACCCAGAGCATTTCAAGTACGGATTGAA 1493851 36 100.0 30 .................................... TGGTGGTAGTGGCTAAACCTACAATTAAAA 1493917 36 100.0 30 .................................... AGGTCTTTTGCATACCTGAATAACTCATAT 1493983 36 100.0 30 .................................... CTTTAAGCTAGGCTCTTCCTCTTATGCGGA 1494049 36 100.0 30 .................................... TAAATTTCAATTGAAGGGGTAACTATCATG 1494115 36 100.0 30 .................................... GTTTGCGCTTAATCTGTATTGTTGGGAGGT 1494181 36 100.0 30 .................................... TGGAGAGTTCAAACTTGAATTTGCAGCAAA 1494247 36 100.0 30 .................................... ACGGCATTTGCTGGCTGTTCGCTGACGTCT 1494313 36 100.0 30 .................................... AAGTACTAGCTGTATTTCCATCAGAACTTG 1494379 36 100.0 30 .................................... GATAGCAAAATCGGCACAATGGGATTGATT 1494445 36 100.0 30 .................................... TTGAATGAAGTACACTAAACAGGCCTTGAT 1494511 36 100.0 30 .................................... AGTCAATTTCTATCAGTTCAAGCATTATCC 1494577 36 100.0 30 .................................... GTCAATGTATCCAGAGTTAGAGCGAGACGA 1494643 36 100.0 30 .................................... AAACATGAGTTATACTGTTACTTTATTTTT 1494709 36 100.0 30 .................................... TAAGCTAACAAATAATCATCTAAAACCTTA 1494775 36 100.0 29 .................................... TTGGACAGATTATATTCTTGTCTATTTCA 1494840 36 97.2 0 ...........G........................ | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.8 30 GTTTTAGAGCTATGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGATAAACCAGAAGTCAAATCCATGATTGAAAAGCTAGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTGGAAAATGAACTAGACCTGGAGTACGATGAAATCACCATTCTAGAGTTGATTGATGCGTTAGGAGTCAAAGTTGAAACTCTGAGCGATACTCCTTTTGAAAAGATGCTAGAAATTATCCAGGTTTTTAAGTATCTTTCCAAAAAGAAACTCCTTGTTTTCATCAATGCGACAGCCTATCTATCAAAGGATGAGTTAGCAAATCTGATAGAGTACATCCAGCTCAATCAACTAAGTGTTTTATTTGTCGAACCTCGAAAAGTATATGATTTTCCGCAGTATGTGCTGGACCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAAAGTAATAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAAAAAAATTTTTCTACGAG # Right flank : CGGTTCAAGTATAATCATCTACAACACAGCAGGTTAAAATAAAGCTTTGTCCGTACATAACTTGAAAAAAGTGAGCGCCGATTCGGTTGCTAGGAAGTCATCCGCAAAGATGGCTTTTTCGTTTTAAAGAGAGATGAAGCAGGCAGTCTTTAAAATCATAAAAACGCATATTACCAGGCATTTAAAAACCTTGATATTATGCGTTTTATAACAGAAATATTTTATTTTTCCATTCTCTCCTAAAATTGAGTTTATCACTCCGCTTATAGACTGTAATCCAAGCTTTCTCCTACTGTTCTTCATGTTCGGATAAAAAATAATAAGTCATAGTACCAAAGATTGATCCTACTCCAAGTCCTACTAGTAGGAAAAATGCGATCATTTTGAGTTCAAGAAACTGCAAAAAGAAATCTGTAATGGAGTGATTTTCAAGGATTACTTTTTTGGAAAATAGGATAAATAAGTAGAGAGTTGGGATGCTGGTTCCAACTATCCAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //