Array 1 287557-287911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPN010000002.1 Listeria innocua strain FSL L7-1670 NODE_2_length_517407_cov_28.289854, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 287557 29 96.6 36 .........G................... GTTGTTTCACTTCCATCGCTTACACGTCCGACTTTC 287622 29 93.1 38 ......T..G................... GAAGAAACAACAGATACCACATTTGTAAGTGCCAATTT 287689 29 100.0 36 ............................. ATACCTTATGCAACTTTAAGCAACCGTGATTGGAGT 287754 29 96.6 36 ......A...................... ATTCCTGACTTATTTAAAAGTAATACTTGTTGCATC 287819 29 96.6 35 ...............C............. TTGATTTTTCGAATATCTCGTAATGTCTCACTTAT 287883 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 93.7 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGTGTACGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCAATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAACACCGGGAATCGACAGAAAGTTGTAAGTAGCTGGGGGAAGATGTGCTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGGGGAGGATTTTAGATGTTTTTTGTTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATTGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTTCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTATCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTATCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT # Questionable array : NO Score: 3.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 316436-320472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPN010000002.1 Listeria innocua strain FSL L7-1670 NODE_2_length_517407_cov_28.289854, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 316436 29 100.0 36 ............................. AGGTTTGTAAAAATATATTTCTCATTTCCTAATTCA 316501 29 100.0 36 ............................. AAGGCAAAGAAACGAACGGGTTTATTGATTGCTATT 316566 29 100.0 36 ............................. AAAAGTAATTTCTGGGAATCGGAAAAAGCCTTGGGA 316631 29 100.0 36 ............................. ATTTTCTGTTGATGATGCACTGAAAGGAATTGCACA 316696 29 100.0 34 ............................. TCAACTGCTTATGGACCTGGAGCAATTCGCTAAT 316759 29 100.0 38 ............................. GAGACTCAAAAGTTAGTGTTAAAACTAGCGGCTACCGC 316826 29 100.0 34 ............................. TTTTTCGTTCATAATCTAATTGATATGAAATAAC 316889 29 100.0 35 ............................. CTATATGCATCTTCAACAACCTTAAACGAAAAGTT 316953 29 100.0 36 ............................. TTATACTCACTTTTATCAATGATATTTTTAGCTGTT 317018 29 100.0 35 ............................. TACCATAAAACTGCAAATGTAACAGATGCGTTAAT 317082 29 100.0 36 ............................. TTGCCTCTTAGTTCGGATGTAACGGCACAACTGATC 317147 29 100.0 35 ............................. TCTGTTAGATACAATAAAAAGCTGGTAAGTGATAT 317211 29 100.0 34 ............................. GTAACAACTTATACATTCAGTAGAATTGCTTACT 317274 29 100.0 36 ............................. AAGCCTCTACCAGCATAAATAAAATAATCATTAAAC 317339 29 100.0 37 ............................. TCTGCTAAAAACTTCTTCATTCTCTCAGATAGCATAA 317405 29 100.0 35 ............................. TCGTTAAAAGTGTCATGGTTAAGCTTCTGCATTAA 317469 29 100.0 34 ............................. TTTACATCATTTATAATTTCCTGTTGATATTCTC 317532 29 100.0 36 ............................. ATCGTATATAGATTGCAAAGCTTCCTCAAAAGTTGC 317597 29 100.0 36 ............................. TTCGCATCCACACTGATATTGCCGGATGCCATTTAT 317662 29 100.0 34 ............................. GCAATTGTTTTCATGTGTTTAACTCCTCATCTAA 317725 29 100.0 36 ............................. TCAAAAACAATAATTTCGTCATATTGAGTGAACGTT 317790 29 100.0 36 ............................. ATAGTCAATTTCGCTATTTACCACGCAAGTATGAGA 317855 29 100.0 37 ............................. ATTCTTGAAATATTAACACTAATAACGAAAGGGCTAG 317921 29 100.0 34 ............................. CTTCTACTTCTTCTAAATCTTCTTTCTTGTCGCG 317984 29 100.0 36 ............................. GAAAATATTTGATGCAATTAAAAAAGAAGCGTCTGA 318049 29 100.0 35 ............................. GACACAAGTACGCGTCACGGTAGACTGGGTATTTT 318113 29 100.0 34 ............................. AACGATTCAAAAAGCGAGCGATTCTATTCCTAAA 318176 29 100.0 36 ............................. CAATACGCTTTTGGAACATTGATTAAGATTACCACA 318241 29 100.0 37 ............................. TTAGATGTAGATGCTGATTATGATGATAAATTTCAAT 318307 29 100.0 34 ............................. TGAATGTAACATATCTACTATTGTGTTTCATTCG 318370 29 100.0 35 ............................. AGTGCTCCAAGAACAAATGGTGGAACAACTACAAT 318434 29 100.0 34 ............................. TTCATCAAGCTATCAGGATTTCCAATGACAAAGA 318497 29 100.0 36 ............................. AACCCCGCGGCAACTTTTGCCAACAGTGGTGCCCAT 318562 29 100.0 35 ............................. TCGCCCAGAATTGTAATACAGCATTAGCTTTTTGC 318626 29 100.0 38 ............................. AAACAAATTCAGTACAGGAGGGTGGCAACATGTCTACT 318693 29 100.0 36 ............................. ACTCGATCGTAAAAGAATTTCTTTTGCTCTTCTTGT 318758 29 100.0 36 ............................. AAGCTAATATTCCCCCAGTTCTGCGCTAACACTTCT A [318780] 318824 29 100.0 34 ............................. GAATAAGCTTCGATAAATTTCCCGACCTCAAGAA 318887 29 100.0 34 ............................. GTACTTATCGTGATCATACACAAGTATGGCTGTC 318950 29 100.0 34 ............................. AGAGCAAAGGCTGGTCATTGTATAAGCTGGCAAA 319013 29 100.0 35 ............................. ATAACATTTAAGTATTTAGAAACGCCAGGTTTAAC 319077 29 100.0 36 ............................. GTAATTAATTCAGTAGCTGACTTAATACGTTCAATG 319142 29 100.0 37 ............................. CTGTTTATCTGTATACACACATACTATTTCGTCATTG 319208 29 100.0 36 ............................. TAACACAGAACATAGACATTTTCATGTTGCAGGTGT 319273 29 100.0 36 ............................. ATTCCTAAATCAAAATCTAAAGCCTGGAAGCAGCGA 319338 29 100.0 36 ............................. TGGTTTTCATCTTTGAATTCTTGGTGTACTGATCCC 319403 29 100.0 34 ............................. ACAATTTGTGAGTTCAGTAGGTTTATCCCCACTC 319466 29 100.0 35 ............................. AAAGGTTCGGACTTGGAGAAAGTAGCCGACTATTT 319530 29 100.0 36 ............................. GTTGTCCATATGTCTAATTCTTTGATATACACTATT 319595 29 100.0 36 ............................. TTCTGTTTGGAAGTAGCTGTGTCGGCAGCCCAAGTC 319660 29 100.0 34 ............................. TAAAAATTGATATTATTGTTGGACCAGAAGCACG 319723 29 100.0 35 ............................. TATTGTACTCACCTAAATCGTGATCAAGCGATATT 319787 29 100.0 37 ............................. TTCGAATCCTTCCGCTTTCATAGCAGCAACAACCTTT 319853 29 100.0 36 ............................. TTTCAACTGAAGCTACATGTACATGAATATTATCTG 319918 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 319983 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 320049 29 100.0 37 ............................. TTTTTGTGCAGTTCCAGCTGTTACAACAACTAAATCT 320115 29 100.0 36 ............................. TTTTTCCACCTCCAATCAGCTATATAGTGGTACTGC 320180 29 100.0 39 ............................. CTCACTTCCACACCTCGCATTCTGTGTTTGTTTCGTTGA 320248 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 320313 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAAATTCGCCGTTTTGA 320378 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 320443 29 93.1 0 .......................A....C | C [320466] ========== ====== ====== ====== ============================= ======================================= ================== 63 29 99.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGCTAGATAAGTATATTCGAAATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAACTAAGATGGCTGGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACATCAAATTTCTTTTGATGCCCTTGGTCTGTCGACCTTTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTTGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCAGCAAGAAAGCCATTATAAAGCCCTTGGTTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACGCCAAACGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //