Array 1 65567-63872 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEZ01000027.1 Escherichia coli strain MOD1-EC6014 MOD1-EC6014_27_length_74331_cov_34.8551, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 65566 29 100.0 32 ............................. CCGTAATATTCAACCTCGCCACCGAATATCCG 65505 29 100.0 32 ............................. CAGAAATGCTGATGCGATCTTCAATTCTGCAA 65444 29 100.0 32 ............................. GGAAGTTAATAACGGCATTACAGAGTGTGAAA 65383 29 100.0 32 ............................. TAACGAGGAATTAAAAGCGGCAGTCAGGCGGG 65322 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 65261 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 65200 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 65139 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 65078 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 65017 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 64955 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 64894 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 64833 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 64772 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 64711 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 64650 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 64589 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 64528 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 64467 29 100.0 50 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAGGTGTTCCCCGGCGAGTAA 64388 29 100.0 32 ............................. CCGCCGTTATATGGAAAGATTCCGGTTTGGTA 64327 29 96.6 32 ..........T.................. ATGATCCGCGTGCGACCCTCGTTATAGTCTGC 64266 29 100.0 32 ............................. GTAAAAAATATGATTGATTTAAAGCGGGTGCC 64205 29 100.0 32 ............................. CAATTGGCGGAATACAGGACGGGTGGATATTC 64144 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 64083 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 64022 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 63961 29 100.0 32 ............................. CTGAAAAAAAGGGACTGGGTAACAGCGCGTGA 63900 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 28 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGTCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107195-108260 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEZ01000013.1 Escherichia coli strain MOD1-EC6014 MOD1-EC6014_13_length_115005_cov_32.8307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107195 29 100.0 32 ............................. AATTACAACTGGGATTCATTGCAAATCAGGAA 107256 29 100.0 32 ............................. AAACAGGCCGGAGATCAGTTTAATACGCTGAT 107317 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 107378 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 107439 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 107500 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 107561 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 107622 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 107683 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 107744 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 107805 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 107866 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 107927 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 107988 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 108049 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 108110 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 108171 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 108232 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //