Array 1 160403-159382 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYYA01000001.1 Eubacterium ramulus strain 2789STDY5608891, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 160402 36 100.0 30 .................................... AATACAAAGATCAGGAAATCCAGTTTGTAT 160336 36 100.0 29 .................................... TGATCTTTACCATGCTGTGTGTCCTCAAA 160271 36 100.0 29 .................................... AACTCAAGGAAGAGTATGCTTTTTCCGGT 160206 36 100.0 30 .................................... AAATTCTACGGTTCAAAAGTTTTACAGTCG 160140 36 100.0 29 .................................... TCGATAGCCCAGCTATCAACATCACGCCA 160075 36 100.0 30 .................................... TGCAATTCCAAACCATTTGGCAATTACAGT 160009 36 100.0 30 .................................... TTTTCACGTTTCCTACACCTCCTAAAATCC 159943 36 100.0 29 .................................... AGTTATGATTTCTTTGCCAACGTATACTC 159878 36 100.0 30 .................................... TAACAAGCGCAAACAATCTGGATCTTGGAT 159812 36 100.0 30 .................................... TATTCATAAAGTCCGGCTATCGTAATTCTA 159746 36 100.0 30 .................................... TGCGTTTCAGAATTAATCCAGAACGACGCA 159680 36 100.0 30 .................................... ATTTGCTTTCAAGATTAAACAAACGCAATT 159614 36 100.0 29 .................................... TGATAACCGTAAATTTCATTTCCGTTAGC 159549 36 100.0 30 .................................... AACAACCTTCCCTTCTGCGTCCATTCAGTC 159483 36 100.0 30 .................................... AAACTACAAATTATCTCAGCAGATAAAAAA 159417 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTGAGAACCTTGTAAGTTTGTAATGGTGTAAAAC # Left flank : AATAAGAAAATACTGGGTAAGTTGTTTCAGAAATTGAAAACTGTTTCGATGGAAGAGCAGTATGCAGAAATATGTGAATTGAATGCTAAAGTTGTTCATTATTTGGATGATTTAAATTTAAAAATGCCATATCCGATTCAATTTCGACTGGAGTTAGATGTACTTGATCTTTATAAAATATATGGGGTTCAGTTGGATACAGAAGAAATTGATATGTTTGAACGGCTCTTGGAGTATGTCAAAGTACTGAAATCATTGTGTGGAGTTCGCTTGCTGGTATTTATAAATGTGAAAAATTATTTGTCAGAAATGCAGATAAAAGAATTGTACAAAGCAACATTTTATTATAAAATAAATTTATTATTAGTTGAGGCACATCAAGGGAAAAATTTAGAATGTGAAAAAAATCAATTAATAGATGAAGACATGTGTTTTATACATTACTAGGTGGCTTACGCATATTGACCGATATGTTCGGTTCGGTGATGATCTCATTTGAG # Right flank : GGCATATTCGTCAGATCCCAAAGTAAGCCAGTTTGAGAATACCAACAAGTAAGAAGCATTTACCAAAAAAAGTTTATTAATTACACAAAAGAAGGAGTTGAGAAATTTGTCTAAATCAGAAACGGTTTTAGAGCTTCAAGAATTATTAAAGGATATGAGATCCATTACAGTGGATCTTAATAGAAGCATTTCTAGTCTAAAAGAGATTTTAGATGTTGAAGAATTTATTCCTACTAGCTTGGGAGAGAAAATAAGGACATATTTAGAGAAGATAAATGAAAAACAGACGGAGTTTGTTTCAAAATATGAAGCTCTTAATAGTCGTGAGCCCAATACAAAATATGTGGTTCTCGAAAATGAATTGGAAGAAGCTAAGAAGGTTTTCGAAGAAAATGATAGGTATGTAAATGGAATTAAATTCTTTTTGTCTTTGCACTCTGATGATGAAAAAACAGAGAATATTTTGCAGAATAGAAAAAATACTTTAAATAACTTAAACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAACCTTGTAAGTTTGTAATGGTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 34657-36489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYYA01000022.1 Eubacterium ramulus strain 2789STDY5608891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 34657 36 100.0 35 .................................... TTCAATTTGTTCTTTTGTTTGTCTTTTAACTTTTA 34728 36 100.0 34 .................................... ATTTACATACATTAGAAGCAAACGCCATAGAAGC 34798 36 100.0 35 .................................... ACCTAGTTGTTTTGCTATCGTATCAGCTGCATCTG 34869 36 100.0 36 .................................... AGACCAGTGCGCTACCACTGCGCCACTTCCCCATAA 34941 36 100.0 35 .................................... TGATAAACAGGCAATTGGAACTTCCAAACTATATC 35012 36 100.0 36 .................................... AAATAAGTCCCTGTACCTTTGTTCTAACTCAATTAG 35084 36 100.0 35 .................................... TGATTACTAATGCATGAACGAAGATACAGGTATTT 35155 36 100.0 33 .................................... AAAATACTGCAAAGCTGTCCATGCACAATATTC 35224 36 100.0 35 .................................... AATTCTGAAAGATAATCTGCTCTTTCCTGTAAATA 35295 36 100.0 35 .................................... AATCATATCTTTCATATCATCACCTAAAAGTTTTT 35366 36 100.0 36 .................................... ATTGCTTTACTGCTCTCATAGTATTAAACATTGTAA 35438 36 100.0 34 .................................... TTACTTCTTCACAATCATCTATTGCTTCTTCCAT 35508 36 100.0 38 .................................... AAGTATTCGCATCTTTCTTGTAATAATTTTTTTGTCAT 35582 36 100.0 35 .................................... TATTCTTTTGTTATAGCCAAACTTTTTAAGAATTG 35653 36 100.0 40 .................................... TCATCGATAATACAACCTAATGTATTTGCTGAAGGCTTAC 35729 36 100.0 39 .................................... GACAGAGTGCGTGCAGACTGGAAGAAGTCAACTTTTGTT 35804 36 100.0 38 .................................... TTGATTTTTCATATCTACACCTACTTTCTGCAATATAC 35878 36 100.0 40 .................................... AAGCTCATCATTCATGTATGAAGCAATATCATTCATTTCC 35954 36 100.0 34 .................................... TAAAAGTTTTTTAACTGTCATAAACTGTAAATTT 36024 36 100.0 38 .................................... ATTGTTCTTGTTACCATGTTTTCTTTTCTTGCCATTTG 36098 36 100.0 35 .................................... GCAAACGGGAACACAGTAACACAGGTAAAGAGAAC 36169 36 100.0 35 .................................... GTGTCCCTTGCTTTCAAGCGTTAATCCTCTTTTTC 36240 36 100.0 37 .................................... AACGGCAGACTAAAAGTAGTCTTGATGATAGTTTCTA 36313 36 100.0 37 .................................... GAAAGAATAGATTTTCCATCAACAGTAGGTATGCACA 36386 36 100.0 33 .................................... TGATTTTTGCCTCCGATAATTTAATGTTGTGTG 36455 35 77.8 0 ................T..A.-A.......A.T.CG | ========== ====== ====== ====== ==================================== ======================================== ================== 26 36 99.1 36 GTAGATATATAGATTCCCCGTGGAGGGGACGAGAAC # Left flank : CGATAGACAGCACGATATGTCCATATGATATGGAGGATATTATAGAAGCATTGAATTGTTTTCAGAAAATTTGTTATCAGTATTTTTATTCCAGATTTCGTAGAGGAACAACGAAGGAAAATATTGTCTGGATTGGTGGCGGATGTGGTTTCCTGTCAAAGACGATTGTATATCCTTTACTTGGAAAAGATGCTGTGCGGGTAGTAGACAATATATATAAAAATACTCTTGGTCCAAATTATATAAAACATAAACACTCTAAAGATATTTCTTTGAGATTAGCACCACATGTATGTAAATGTACTAAGTATCAAGGTAAATTATATGATATGGGAATGGCGCAAATTGAGTATGAAAAAATATGATTTTGCGCCGATGCCTGTAAAATCAATGGATTTGTCCGTTTAATAGCACAATTTTAATGAAAATTATCTGGTTTGCGGGTTTGCGCCGCAAACTGGATAATGAGCCCAGTATCTTTGCGGGATAGCAGGGAGAGG # Right flank : GAAAAAACAGTTAGAGTAGAGAGAGGGAAAGACTATGAGTTATTTGTATGTAAGTGAACAGGGGGCAAGTATCGGTATTTCCGAAAATCGATTTCAGGTGAAATATAAAGATGGCTTAATAAAAAGTGTGCCTGCAGAACCGATGGAAGTAATATCTGTGTTTGGAAAGGTACAGATTACAACACAGTGTATGGAAGAATGCTTGAAAAGAGGAGTAGATATATTGTTTTATTCGATTAATGGGGCATATTATGGAAGATTGATTTCAACATCCCACGTTAATGTGCAGCGTCAGAGAAAGCAGGCAGAAATAGGAAAAAACGAGGATTTTAAACTAACATTTTCCAAGAAAATTATTGATGCAAAAATACGAAATCAGATTGTTATTTTGAGACGTTATGCAAGAAATAAAAACGTAGAGATTGAAAGATCCGTTATTGAAATGCAAAATATGTATAAAAAATTACTAATAGCGGAGAGTGTTGAACAGATAATGGGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGATATATAGATTCCCCGTGGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 82513-82949 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYYA01000009.1 Eubacterium ramulus strain 2789STDY5608891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 82513 26 100.0 43 .......................... GCTGTCGTATACCAGTCCTGTGTAACCGAAGTTGATTGCACCG 82582 26 100.0 43 .......................... ACTGTCGTATACCAGTCCTGTGTAACCGAAGTTGATCGCACTG 82651 26 96.2 43 .....................T.... GCTGTCATATACCAGTCCTGTGCGTACAAATGTGATTGTGCTG 82720 25 88.5 41 .....C...............T.-.. CGTTTGCTGTCAGCCCTGTGAACGCAAATGTGATGGTTCCA 82786 26 100.0 43 .......................... CTTGTCATTGTACAGACCTGTGTAGCCAAAATTGATATTGCCA 82855 26 96.2 43 .....................T.... GCTGTCATATACCAGTCCTGTGTAGCCATAGTCGATGGTTCCA 82924 26 73.1 0 CCAA.................T.C.C | ========== ====== ====== ====== ========================== =========================================== ================== 7 26 93.4 43 TTCTCTACATACCACCAGCCACAGTT # Left flank : TTCTGCCTGATTGGCGGAATCACCTGCATTAATATTTGCATTTCCGATATTCGCCAGCTGATCCATGTCCATATCCAGCGTAGAGGAAAGCAGATACATCCGTGATGCATCCGCACGGTTCCTGTCCATGGGATTTTCCGGGGCTGTCTTTCCAAAAGAAATCATCAGCGCCAGAAACAGAGCCACAATTCCGGCTCCCGCCAGTGCTCCTGTTATTTTCTTTTTATTTTTTCTGTTTCTACTTCCCGGTCTGTTCATGAAATTCCCCTGTTTTTTTTGACAAAAGCAGGTTTGTTCCGGTTGCAAAGTCCGAAACAAACCTGTTTTTTACTTCCTTGTGTCCATCTAAATGATGTGTATGCAATAATTGTCAGATAATTATTCGCAATCTGCCCACGCTACTTGCTTATTCACGTTAGAATCTGACTGCTCCTCCAACTACATTCCATACACCGTATGCATTTCTTACAGTTCCTGTATACCCAAAGTTGATGGCACCG # Right flank : CACACTCAGCGAGCCCTGTATAATCAAAATCTACCGCACCGTCTTTGATGTACCACCAGCCGCATACACTGTCATTGTACAGACCTGTGTACTCAGCATCTACTTTACCGGCTTTGACATAACGCCATCCGTAAACAGCATCATTGTAAAGTCCGTTATAAGTAGTATCTACTTCGCCTTCTTTTACATAGTAGATACCGTCTTCTCTCTCCTGAAGACCTGTGAACTCTCTTGCTTTGTCTCTGGTTGTTACATGTGCAGTCAGGTCAACCGGAGCTGTGCTCTCATTGCCGTCCGTGAAATACAGACCTTTGATCGCTACTTCTACCGGATCATCTACATATTTTAATACTTTAAATTTTAATGCAAACGTTGCTTCCGAGAAGGTAGTATCTTTTGCAGATGTCAGGTAAGAGAAATTTCCTCCCGCAGTGGATACCATCGCTTTCTCCGGAAGATCTTTTTTCTCAAGTCCCTCAAATTCCAGTACAGTTTCATCG # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCTACATACCACCAGCCACAGTT # Alternate repeat : TTCTCTACATACCACCAGCCATAGTT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //