Array 1 235124-234885 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019834.1 Leptotrichia wadei strain JMUB3933 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 235123 36 100.0 32 .................................... TTCATAGCTTCCCTTTCCTGATTTTCTAGTTT 235055 36 100.0 32 .................................... AATGGAGTTTGTCCTGGTTTTAAGCCCATATA 234987 36 100.0 31 .................................... GGAAAGTATGGCAATTACGCCTGATATTGTG 234920 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 4 36 100.0 32 GTTTTAGTCCCCTTCACTTTTGGGGTGCTCTAAATC # Left flank : TCCTCCACTTTTGAAGGCTCAGGAAATTTTTTTCTTACATCCAAAAAATCAGCCAAATGCAGACCCAATGTCTCTCTCAAATTGGAAACAGCCTCCTCCATGCTATTTCCAAATGTAGCATAATAATTTATCTCTCCATCTTCAAACTTATCAAAATCAACAATACAACCATAATAAGTCCCATCTTCCTTAGTTACCACTGCTGGATAAAATACATCCATTTTAATTATCTCCAATCTATACCACGTGTTAAATACGTGTTTAAAAATATTTATAAAATTTTTTAGCATCTCTGCTAAAACAAAACAATTATTTCAAATTTTTCTATTCCTTAATCACTCATTGTTAGTGATTCTTTTTTTACTTGGACAATTTTTCATTTAATTTCTTCAATTTTTTTAAAATCACATTTTTTTAATATTCCTTATTTAATTGCAAATTTTCATTACTTTTGGGGTGCTCTAAATCTGTAAAAGCCTTCATAAATTCTAAAAGAGAAA # Right flank : CCATCCAAATTATGGGATAATAATTTTTAGTGAAAGCAAGAAGGGACTAGAATTTAATCCCAACTTGTTTTTCAATACTTCTTAATGTTCCTACAGGTATATCTTTTGAATGTGGTACTGTGACCACACCTTCCACACCTGGGATCATCCATTGATAATGACTACCTCTTATACGCACAACTTTTCCGCCTAATTTTCTAAATCTTTTTTCGATTTTTCTATATGACATAAATATCATTCCCTTCTAAAATAACGTTAATCATAACTTCTAATAGAAAGTATCTGAAAATTAGGAATAGTTGAAAAGTTTTACAAATAGTCATTTTCAACTTACAAATCTATTATAATACGTATACAGTACATTGTCAATAGTTTTAAAAAAACTTTTTAGAAAAAATCACAGCTAATATTCTTAACTGTGATTCTAATATTTTTACAAAAAAACAAAAAAATTTACTTTTTAAAATTTCTATTCAAAATTATTTATCTTACAATTTGGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCCTTCACTTTTGGGGTGCTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 239590-239895 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019834.1 Leptotrichia wadei strain JMUB3933 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 239590 36 100.0 31 .................................... TTCATAAAAAATATATTGACAAATTTTGAAT 239657 36 100.0 32 .................................... TTCCTAATTATATTTTCCAAAAGTTTATTTTG 239725 36 100.0 31 .................................... AGCTGTTGTGGCGTACTCTCAATCTCTTTTA 239792 36 100.0 32 .................................... GTAATCATGGTTATCACATCCTTTTAATATAA 239860 36 86.1 0 ........................AA.T...G...T | ========== ====== ====== ====== ==================================== ================================ ================== 5 36 97.2 32 GATTTAGAGTACCCCAAAAATGAAGGGGACTAAAAC # Left flank : GAAAACTTAAAAATGCAGTTATGAAATCAGTAGTGGATATATTGAAGGAATATGGTTTTGTGGCGAAATTTAAGATAGGAGCAGATAAGAAAATAGGAATTCAGACTTTAGAGTCGGAAAAAATTGTACATTTGAAAAATTTAAAAAAGAAAAAATTAATGACTGATAGAAATTCAGAAGAATTGTGTAAACTTGTGAAAGTTATGTTTGAGTATAAAATGGAAGAAAAAAAATCTGAAAACTAAAAAATGTAAAGTAATTTCGTTCAAAAAAGAAAATCATATCTGGAGAAATAAGTATCAGAGAAAAAATCATAAGAAAAGAAGCAAAAATTTTGGAATATTAGTTTGCATTATCAAAAAAATATGATAAAATAAATTAACGGGGTAATCTAAATCGCTAGAGTATGTCTGGAAACTATTAAAATACATTTAATTTTTCAGGCACACTCTAAATAAACAAGTAAATAAAATATAAAATATTATCCCATAATTCGATGG # Right flank : TATATATAGGTTTCTAAATTTAACTTTTTAGATGATTTTTGGGATGTTGTAGGTGATGATGTTTTAGATAGGTTAAAAGATGTATTAGAGTATATAGTAAATAAATTATTAGATATTTTTAAAGAATTGGTTTTAGAAGTTTTAAGAAGATTAGTGTCAAAATCATTTAGATAGTATTTTTAAGAATAGGAAAAAAATCACGATAAATTTCTATATTAAAATAGAAATATGTTATCGTGATTTTGTTATTCAAAATTAAAATTGCTAAGTTAATATTTAGAGATAACTTTTGCATATTTTTACAATTTTTTTGAAAAAAATGTTATAATAGTAAAAAATTTATAAAAAATCTTCAGTTTAAGGAGAAAGATACTATGAAAATTAGTTATAAAGAAATCGGATCTAATTTAAAAGAGATATTATTTGAAGAATTTAGGAAAAATGAAGATGTTCTTTTTGTGTTTGAAAATTCGGCTTCATTTTTTGAGATTAAAAGGGAA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAGAGTACCCCAAAAATGAAGGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 1456837-1458098 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019834.1 Leptotrichia wadei strain JMUB3933 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1456837 29 96.6 37 ...................T......... CAATGAAAGAGTATTTACAACTATGAACAGTTTTATG 1456903 29 96.6 36 ...................T......... TGGAATTAAGTCTGGTCAAGCTGGGCGTAATTTAGC 1456968 29 100.0 35 ............................. CAAAATGGTTTGATACACGTGTTATTAAAGCAATT 1457032 29 100.0 36 ............................. TCAATATTATGCACAATCGCATCTATTTTAATTGTT 1457097 29 100.0 36 ............................. CAATAGGGATATTACTTTATTTAAAAGAGCTAATAG 1457162 29 100.0 36 ............................. GTCACTTAAAGCATATTTGATAGCGTCAAAACTGTG 1457227 29 100.0 36 ............................. ATTTATATAAGGCTTTTTAAGGCTCTGTTTTATTTT 1457292 29 100.0 37 ............................. TTTATAGAAATGTTGTTCATTATTTAATACTAGATAC 1457358 29 100.0 36 ............................. GAGTATAAATACAGATATAAAAAGATGTTTATAGAT 1457423 29 100.0 36 ............................. TTATTAATACTTATAAGCCATCCCTAAGAATAGGGC 1457488 29 100.0 36 ............................. TTTTCAGCTTCTTTTTTCTTTTGTTCTTCTTTAGTT 1457553 29 100.0 35 ............................. CCCGCTACAGCTTTTAAAACATTTGCAGTTAATTG 1457617 29 100.0 36 ............................. TAGTTAAGTATGATTCATCACCCCTGTAATGCTATA 1457682 29 100.0 36 ............................. GACTATGTCAATAACATTGTCTTTAAACAAAATAAT 1457747 29 100.0 36 ............................. AAAATAAGTTATGTAGATTTAGAAGTTTTGTTTAAG 1457812 29 100.0 36 ............................. TTTATTATTTTTTTCATAAAATATTTCAAATTGATT 1457877 29 100.0 36 ............................. ATTTAGAATCTTAATAAAGAGATGTGGTATTATTAC 1457942 29 100.0 34 ............................. CTTAACTAGCCTGTAATGAATCATCTTTACTACA 1458005 29 100.0 36 ............................. TAACAATTAACATCTAACCCAAGCCACAGGACTCAA 1458070 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 20 29 99.7 36 ATTTACAATACAAAATGTTCCTATTAAAT # Left flank : TAAATATTTTAATTTTAAATTAGTAAATGAACTAAAATCATCATTACTGAATCCCCATTCATGACCACTGTTTTTAGGGTGGTTATGGTATAAAAAGCGTCTTCAAAATTAATCTCTGTCATTTTATGACTCGGCATTGAATTTTCATCTCCTTTCAAAAATATAAATATCTCCATTTTTAGCTATTACTAACGCATTTTCTTTACTTTTCTTAACGATTTTTTGTTCATATCTTCGCAACAATTCCAGCGATTCATCTTTATATTCCGTTGCATTAATATTCCCTATATTTCTGTATCTACCACCTTCAACAAAAACAGTACTATTATTATTAATTATACCCTCATTTTCATTATTTTCAAAATCTTCTTTTTCAGGTTCATCAGAAAAAACATCGGAATACTCATAAGGAACAATTGTACTTCTACACCGAGGGTGCATTGGCGGATAATTTTCTCCTTCCATTGCATTTTCCGTTTTAAATACTTCACCATTAAGAC # Right flank : TCTTGATATCTCTAACCTACCTAAATAGTATACCATTTTTTTCTGTTTTTGTCGATACCAATATTTTTATATATTTTTACCAAAAATTCCTTTTTATTTTTTTATATAACAGTCAAAAAACTCAATAAAAATCAATATTACTGAAAATCTGTCGACGTCCCAGCTTTTTGGTGTTATTCCAGGTCGACAGATTTTGTTTAAAAGAAGTTTGAAGTTTTATCATCTTCGATTATTCAAAATTCCTTTTCCAGCTATTTTTCTTTATAAGATTTAAAAGTTATTAAGAAGTCTTTTTCTTTCAAAATGAATTTTCATTTTTTGATAATATTTGATAGTGATATTTTTTGTATTAGTTCCTAAAGTGATTGATAAAAAAGTTTAAAAATTTAAGAGAAGTTTTCGTTTTAATAAAAAATTTAGAATAATATTTTAAATTTTGAAAAATTATAAATTGAGGTATAATTAAAATGATAGAAAAATAATAAAAAATTTAATGAATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACAATACAAAATGTTCCTATTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 1462579-1463647 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019834.1 Leptotrichia wadei strain JMUB3933 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1462579 29 100.0 35 ............................. AGCCTTTTGAGGGTCTTTTATTCCCGCAAGCTCCA 1462643 29 100.0 35 ............................. ATACTTAACTTGCCTGTAATTATTTATCTTTATTA 1462707 29 100.0 36 ............................. GCAACGAACTTGTTTGAAGTTTTGTCGCTGAAAAAG 1462772 29 100.0 36 ............................. ACTCTCAACATTGGTTGCGACATACCAGTGAACTCG 1462837 29 100.0 36 ............................. GTAAAATTGGTAATCTTCAAGTAATGATATATCATT 1462902 29 100.0 36 ............................. CAAAAAAAAACTTTAAAAGATAGAATCATAAATTTA 1462967 29 100.0 37 ............................. CTTTATCCGAAATTGGCTTATTACTTATTGCTCTAAA 1463033 29 100.0 36 ............................. ATTTATTAATTATTTTGCTTTATATTACATCTTGTT 1463098 29 100.0 36 ............................. TACGGAACAAAGAAAATTACAAAAAGCAGTTTCGAT 1463163 29 100.0 36 ............................. CATTAATTCATTTCTTTTCAACTTTTCTTCTTCCAC 1463228 29 100.0 36 ............................. TAACAAAGAGTTCGTGGCATGAAAATAATTTTGTTG 1463293 29 100.0 36 ............................. AATACAAAATGGACACAAAAAGGAAGATTATTCGTT 1463358 29 100.0 37 ............................. CTTTATCCGAAATTGGCTTATTACTTATTGCTCTAAA 1463424 29 100.0 36 ............................. ACACAATAAACTTCTTCATATTCTTTCACTTCCATT 1463489 29 96.6 36 .........G................... AAATTTGATTTAACTTTAAAGCAGGCGTTAAGACTT 1463554 29 93.1 36 .......G.G................... CCGTTTTCACTTCCACATCTTTTATTAAATTTCTTA 1463619 29 96.6 0 .........G................... | ========== ====== ====== ====== ============================= ===================================== ================== 17 29 99.2 36 ATTTAATAGAAACATTTTGTATTGTAAAT # Left flank : GAAGGATTCAAAATATGGTGGTAATATGTATATAATTTTAGTTTATGATATTCTTTCTGATGAAAATGGAGCCAGAATTTCCAGAAATATATTTAAAATTTGTAAAAAATATTTAACAAATGTTCAGAAATCAGTATTTGAAGGCGAGATAACACCAGTATTATTAAAAAAATTAAATATAGAACTAGGAAAATTTATTCGCAAAGATAAGGACTCCCTAATAATTTTTAAATCTCGTCAAGAAAAATGGCTAGAAAAAGAATTTTGGGGAATCGAAGATGATAAAACTTCAAACTTCTTTTAAACAAAATCTGTCGACCTGGAATAACACTAAAAAGCTAATACATCGACAGATTTTCGGTAATATCGATTTTTATTGGATTTTTTGATTATTTTATAAAAAGATAAAAAGAAATTCTTGATAAAAATATATAAAAATATTGGTATCGACAAAAATGAGGAAAAATGGTATACTATATAGGTAGTTTGAGGAAGATAAT # Right flank : TACATTACAATAGGAGCATTGGAGCATTTGAAGTGTTAAAATATAAAAAAGCTAAAGTTGAACTTTTAATATTTGATATTGGATATAATTTAAGAAAATATATTCATAAAAAAAAAGACGAGAAGACATAAAACTTCATAAATTAACTAAAAACTAAGTTTTAAGAGAAATAAAGTTCTTTAATTTTTTAGTTTTTCTTTGATTAAAAAAAAAATTGTAATCAAAGAACTATAAAAAATTAGTGAGTTTTTAATTTAGGCAAAAAAATAGAAGCTAAACTCAAAATTTTAATCATTTTGAGATAACTTCTTATACTAATATATTCCTAAATTTAAGTATTTAACCTTCTAATAATTTGTATATATTATTATTCTTGTAACATCTCATCAAAAATTTCTTTTAAATCAATACTTTCAATAATTGATCGAAGAATTAATTTTTTTAGTTCTTCTGAAAAAATAACTTTTATATTTTTTTCTTTACATTTCTCAATTAATTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAATAGAAACATTTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 2165651-2165833 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019834.1 Leptotrichia wadei strain JMUB3933 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 2165651 35 94.3 38 ..T.......G........................ AAATTATAAATCAGATGCTTCAGGAATTATAGAAGAGT 2165724 35 100.0 40 ................................... TCTAACAAAGAGTTAAGTTTCATACTTAATTCTTCGTTGT 2165799 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 3 35 98.1 40 TTCAATCCTTATTTTAATGGATACTCTACTTTAAC # Left flank : ATTATCCCTGTCAAGTCAATATGCTTTAGGGGATTCAAGGTTATCCTTCCATTCATTTTTGCCGTATTATCCCCAAATTTATAAGCCACATATCCATGTGCCACCTCATGAAAAGTCATTGATATTACAAAAACCGCAAGTGAAATTATCATATCCCTTGAAATTTTCACCACAAAAAAAATTCTTGCAACAAAATAAACAATAACTGCAACAATAATCCCCAATTTTATTCCCGAATACTGCGGATTCAAACTCTTAAACCTGTCATAATAGTCTTTTAATTTTTTCACAAAATTTCCTTTCCAAATTTGACTTTACATAATATTTTTTATTCATTACTCAAATTCATCACCCAAAATCCAATTCCTATTGCATAAATTATATCAAATTTTCCCAAAAATAACAAAACATTTTAAAAATTTGATGGATTAAAGTATTTAAATCTTTTTTTACAAATAAAAAAACAACCTTATATAAAAGTTGTTATTTTTAACGAATAA # Right flank : CCCGTACTTTTGAGAAAATTCTTTATTTATCGGTGTTACAGAGATTTTTTCAGACATTAAAATCGCATTTTTTGGCTTAATTTTTGTTATTTTTTGCTATTTTTTTGGTATTTTCCGTAACTCCTAGCCTGCATTTTTACTGGCTTTCAATAGATTTTTCCTTGATTTTTTTATTTTTGGTAATGGTAGGAATTTTTACTACAAACTTATTTTACCACATTTTTTTGATTTTTCAAAATTTTTTTTAAAAAATGGAGTACCAAAACTGATACTCCAAATAACTACTTTTTGCTACATTTTTGTTTTAACTATTTTTTAAACATTCCAGTAACTTTACCAGCTAAGTCCTTTGCTCCTTCTACAGTTTTATCCACTGCTTTTTCAGCACCTTTTTCCACATCTTTAACAATTTTGTTATTTGCTGCTTTATTAGCCAAGTCTTTTGCACCTTCCACAGTTTTTTCAAAAACTTCTTCAGTTCCTTTTTTAATATTTTGAGC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCTTATTTTAATGGATACTCTACTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 6 2222298-2221992 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019834.1 Leptotrichia wadei strain JMUB3933 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 2222297 36 100.0 32 .................................... TAGAGTGCACTGAAACTAAGTTGAGACATTAT 2222229 36 100.0 32 .................................... ACTATAATTGTATAAAATGGAAAGGACGAAGA 2222161 36 100.0 31 .................................... TCATTGACTGGTTGGCTGATGAGTTTAAAAA 2222094 36 100.0 31 .................................... ATTACAAAATAAGGTTTATGCTTAATATTAT 2222027 35 86.1 0 ....................T...AA...-.....A | A [2222000] ========== ====== ====== ====== ==================================== ================================ ================== 5 36 97.2 32 GATATAGACCACCCCAATATCGAAGGGGACTAAAAC # Left flank : AAAGATGAAGAAGTGATAATTCCGACATTGAGCGTGATGGACTATGAGTATTGAGTATTTTGGTCTGCTTATGTATGATTTTCCTATGCAGACAGATGTTGAGATATTTGAATATAGGACTTTTAGGAAAAAATTAATAGAAAAGGGATATTATCAGCTTCAAAAATCGGTATATATAATGAGGTCGAAAACAAAAGAAAAAATCGAACTGGCAGAAAAACAGTTATCAATGCTCGCTCCAGAAAATTCCTCAATCCGTTCCATTATACTGACAGAAGAGCAGTTTCAAAAAATGAAGGTGCTAGCAGGAGAAGTGACAATGGGAGAAAAAATTTCACAAAATAAAATATTGGAATTTTGAAAAATCAAAAAACATGGTATAATGTGAGTGGTGGTTTATATCATTTATTAAGGAACAATATCAAGATGAAAATATGGAAAACACAGATAAATAGAAAAAATATCAATCAAAATATCCTATCACTAAAAACAAATGATGG # Right flank : ATAAAGTATATTTTGACTTGTATTGATGGGTTATGTTAAAGAATATGGAGGTTAAAAATGAAATTAATTGATGTAAAAACCATAGTTAGTGTTTTTCAGGTAAGTGATATTGAAAAATCATTGTCTTGGTATAAAAAATGGCTTGGAGAACCTGATGTTGTTCCAATGGAAGGAGTTGCTGAATACGAGTTAAATAAGGATGTTTGGTTACAGTTATCGTATGAAGGGACTGAAAAAATTGAAAAAAGTTCTATCATTATTGGGATAGAAGATATAAAAAGTTGTAAGTAAATATTAAGGGATAATGGAATAGAAACTGGTGAAATACAAGATTATGAAGTTGTTCTAGTATTTAATATACATGATCCTGATGGGAACAGAATTTCCTTTGCACAAGAATTGTAAAAAATATAGCTTGTAGTTAAAAAAATTGTGAATCTGAAATGCAGGTAAATTTCATTAACAGTAAAAAATATTTAATAAAAATAACTTTTGAGTGA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCACCCCAATATCGAAGGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //