Array 1 106942-106137 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLE01000014.1 Salmonella sp. S080_02588 NODE_14_length_115336_cov_144.087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 106941 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106880 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106819 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106758 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106697 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106635 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106532 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106471 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106410 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106349 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106288 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106227 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106166 29 96.6 0 A............................ | A [106139] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10004-7901 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLE01000055.1 Salmonella sp. S080_02588 NODE_55_length_16316_cov_146.249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10003 29 96.6 32 A............................ TTTGCCGATCCCCTTCCAGACCACCCTTTACA 9942 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 9881 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 9820 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 9759 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 9698 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 9637 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 9576 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 9515 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 9454 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 9393 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 9332 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 9271 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 9210 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 9149 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 9088 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 9027 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8966 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8905 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8844 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8783 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8722 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8661 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 8600 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 8539 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 8478 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 8416 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 8355 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 8294 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 8233 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 8172 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 8111 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 8050 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7989 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7928 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //