Array 1 1015565-1016873 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014994.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001387 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1015565 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 1015626 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 1015687 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 1015748 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 1015809 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 1015870 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1015931 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 1015992 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 1016053 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 1016114 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 1016175 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 1016236 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 1016297 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 1016358 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 1016419 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 1016480 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 1016541 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 1016602 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 1016663 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 1016724 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 1016785 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1016846 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1033497-1036394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014994.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001387 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1033497 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 1033558 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 1033619 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 1033680 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1033741 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1033802 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1033863 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1033924 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1033985 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1034046 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1034107 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1034168 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1034229 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1034290 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1034351 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1034412 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 1034473 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 1034534 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 1034595 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 1034656 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 1034717 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 1034778 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 1034839 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 1034900 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 1034961 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 1035022 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 1035083 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 1035144 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 1035205 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 1035266 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 1035327 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 1035388 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 1035449 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 1035510 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1035571 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 1035632 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 1035693 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 1035754 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 1035815 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 1035876 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 1035937 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 1035998 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 1036059 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 1036120 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 1036181 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 1036242 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 1036304 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1036365 29 96.6 0 ............T................ | A [1036392] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //