Array 1 7964206-7962403 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSGX01000001.1 Streptomyces sp. 2321.6 Ga0151170_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 7964205 28 69.0 126 ....G....CG..C....TC..C.-...T TCGTTGCGGCGGCGACGGCATCCGCTCCGTTCGGATTGTGCTTGTGCCAGCGGCGGTTCTGCTCAGTGGCATACGCCCGCCGGGCCTCGGCTTCGGCTTCCTCGGTTTGAAGGCGCTGCTGCGGTA 7964051 28 89.7 32 C..............-.........A... CCGCGGGATGCCCGTCCGCCGAGCTGCATCTG C [7964040] 7963990 28 75.9 121 .C......TA..C..A.....-....T.. TTTCGGGCCAGGCAGTTGCCTGCGAGGGGCCGTGTGGCCCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATCGGCAAAACGCTCCTAACGGCGCAGGTCGCGAAGG 7963841 29 100.0 32 ............................. GTCAGCATGGAGCCGAAGCGGACGTATTCGCC 7963780 29 96.6 30 ............................C GGTCCTGGCCTCGCTGGCAGCGGCTGAGCG 7963721 29 100.0 32 ............................. TAGACGAGGGCGCGCATGTACTGGCGGACCGC 7963660 29 96.6 32 ............................T CTTCCCACTCGTCCCAGTCGGACGGCAGCGGC 7963599 29 100.0 32 ............................. CTTCCCCGGAGAGCGCAGGGTCACCGAGCCGG 7963538 29 100.0 32 ............................. GCGTAGTTCCGCTGTACCAGCGTGATTCCGGC 7963477 29 96.6 32 .........T................... GGCCAGCGGTCCGGCCTGATCTCCGTGCTGCA 7963416 29 100.0 32 ............................. ACGCTCGGCCTCGCGGTAGTGCTGGGGTCCCT 7963355 29 89.7 32 ............C...........GC... CCTGGGTGGAACAAGACCTGGGACCGCCCCGA 7963294 29 93.1 32 ............C...........G.... CTGCTGGATCTGCCGGACCCGACGCGCGTGCA 7963233 29 93.1 32 ............C...........G.... CTCAACTGCAGCATCAGCCTGGGCTCCGGCGG 7963172 29 89.7 33 ............C.............T.A GGACCTGGTCGTACCGGCCCTCGACGTCGTCGA 7963110 29 89.7 32 ............C.............T.A CGGGGGTGAGTGCCGTGGCGGACCGTACTGTG 7963049 29 93.1 32 ............C...........G.... CTCAACGCTGTACGACCCGGGAGTGCCGAGGG 7962988 29 96.6 32 ............C................ GAGACGCCGCGTGCGCACCTTCTGCCTGCTGA 7962927 29 93.1 32 ............C...........G.... GCGGGCTGTCGTCTCGTACAGGCCGGCGACAG 7962866 29 89.7 33 ............C............A..A GGCCACCCCCGAGATCGTCGCCTTCATGATGAG 7962804 29 96.6 3 ............C................ GCC Deletion [7962773] 7962772 29 79.3 124 A..G...G.C................TT. ATCCTGGCCAGGTAGTGCCTGCGAGGAGCCGTGTGGCTCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATCGGCAAAACGCTCCTAACGGCGCAGGTCGCGACGGGTGC 7962619 29 93.1 32 ....G.......................T GCGACCCACGCCACGCAGGTACACCGGAGCGG 7962558 29 96.6 32 ....G........................ CCCGAGCTGCGGGTCGCCGGGGCGAGGCCGGC 7962497 29 96.6 37 ....G........................ TTAGTGCATGCCGGGGGGCGGTGGCTGCTCCACCCCC 7962431 29 96.6 0 ....G........................ | ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 26 29 92.7 42 GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Left flank : CCCCTTCACCTCAACTCATCGTCCCAGTCCGGGGTTTACTCCACAGCCGATCCGCTGATTTGGCCCCAGGGCCGATGGCTATCAGCTCGGTGCCGAACGAGCCACGCTGGAGGCATACGCCAACCGGGCGAGGACGCTGCCGCAGGCGGCCGGGGCGACCAAGCCGCGCTCGGTCATCACCATGCCGATCGCCGTGCCGAGCCCAAGCGGTTCGCGGCCGTCCCGTCGAACGACCCTGCCGGTGCGCCGCTTCGGCTTCGCCGCGCGGGTAGCGCCGTTCTTCTTGTCGCCTCCCGGACGGCGACCAGGGCCTGGCGCGCAAGGTCGACCCCGCTCAGCTCGCCGGTCACGCGTGCACCGCCATGGCCGTGTCGCCGTCCAGCGGGCGTATAGCAAGGTCGGGCAGCCAGCCCCTCCACGGCACGGCCGCAGTCGTCTCGGTGCGGGCGGCGGCCTGCTCGCGCAGCTGCTCCAGGCGCTCGGCCAGCAGGTACTGCGCG # Right flank : GATTCCGCCGCGAAGGCGAAGGTCCTGCGCAACTCCAGGCTGAGCGTCAACGCCTCGCCGGAACCGGTGAAGAAGGACAAGACGATCACCGTCGCAGGCGCCCTGACCCGCGCTGACTGGGAGACCTACAAGTACGGGGGCTACACCAAGCAGCCGGTGAAGCTCCAGTTCAAGACGAAGGGAACCAGCACCTACAAGACCCTCAAGACCATCACGACGGACAGCGAGGGCAACCTGAGGACGACGACGAAGGCCACGGCGGACGGCTGCTTCCGCTACTCCTTCGCAGGCACGTCCACCACTCCGGCGGTCGCCTCCACAGCGGACTACGTCGACGTGAAGTAACCCTCGGGAGGGCCATCCATCCTCCAGTAAGCGCAGAAAGCTCAGGCCGGAGACCTTTCGGTCTGGGCTTTCTTGAGCCCTGGCCGTTTCCCGGTCGGCGGGCCGGTCGGCCACTGCATCCCTTCGCACTCTTCAAGCTGATCGACGGTCTCGGC # Questionable array : NO Score: 4.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-1.04, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 7968986-7966753 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSGX01000001.1 Streptomyces sp. 2321.6 Ga0151170_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 7968985 28 75.9 61 .C..A.-.....CGA..........A... CCGGTCTTCTTCGTGAACCGGTCCACGGTCTCGTCGATTGGCGCGTCCCGGTCGCTACCGG 7968896 29 96.6 33 ............C................ GCAGCCATTCCTGGTCAGCGGCGATATCCGGAC 7968834 29 86.2 32 ............CGA..........A... ATCATGGTGCAGCGGTAGCCGTCACGGCGCTT 7968773 29 75.9 32 ..C...G.....CGA....G.....A... TTCTCGTCCAGCAACCACTGATCGACGATGAC 7968712 29 82.8 32 ..C.G.......C.........C..A... TTCACGCAGCGGGACATGCAGTTCGCCGAGCT 7968651 29 75.9 121 ..C...G.....CGA.........G.T.. TTCCCGGCCGGGCAGTGCCTGCGAGGGGCCGTGGGGCCCGGTAGATTCAGGCGGGTGGATGACCGGCGTTCCTTGAATCACGAATTGGCAAAGCGCTTCTAACGGTGCAGGTCGCGAAGGG 7968501 29 100.0 32 ............................. GCCGCAGGCGTAGAGAAACGAGGAGCCCGCGG 7968440 29 100.0 32 ............................. GAGCAGTCGCCGACGACGCGGGGCCAGAGGAT 7968379 29 72.4 146 .......T..T.C...T....A..G.TT. ATCCTGGTCAGTTAGTGCCTGCGGGGAACAGTGTGGCCCGGTAGATTCAGGCGGGTGGATGACTGGCGTTCCTTGAATCACCAATTGGCAAAGCGCTCCTAACGGCGCAGGTCGCGAAAGTTCGCCCTGCTGTGGGGGCTGTTGGA 7968204 29 93.1 32 ............C...............T TCTCCGGGGGTCACCTCCGGGCACATAGAGAC 7968143 29 93.1 32 ...T........C................ TTCTACGTCGAGGACATCGGGCCGCACGTACG 7968082 29 100.0 32 ............................. ACCCTCTGGGGTGTTCCGGCGGAGGCTCTGGG 7968021 29 93.1 32 ..........T.C................ ACATCACCATGCGGGACTGCTACGTGGGGCCG 7967960 29 86.2 32 ............C........A..G.G.. CCGAGGGCCGCCGCGCTGTTCGGCATCGAGTC 7967899 27 86.2 31 ......-...G.A-............... ACGGTCGGGCAGATCCGGCAAGGTGTCGCGG 7967841 29 86.2 31 ...T....T............A..G.... CCCCGTCCAGCAGCAGCGTGGCGGTACGCCC 7967781 29 93.1 31 ...T.....................A... GAGGTTTGGTTGTACGACTTCCTGCGGGCCG 7967721 29 86.2 32 C......T....C...........G.... GCCCGCTACGACGTGATGGCCATCGACCCGGC 7967660 28 69.0 32 ............CCC.T..-.A..GT..C TCGAACCCCGCCCGCACGGCCAGGAGCCGAGT 7967600 29 79.3 119 CG....C.....CCT.............. ATCATGGTCTGCCCGGCGTCGGCATCGTCGAGCTGCCCGATAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATTGGCAAAACGCTCCTAACGGCGCAGGTCGCGAAGG 7967452 29 89.7 32 ............CT...........A... GACCTGCGCGTCCTCGACCTGCACACCCTGGC 7967391 29 89.7 32 ............CT...........A... GAACGTCGAGAGGATCCGCTCGACGAGGTCGC 7967330 29 86.2 32 ............CT...........A..A CCTCAACAAGTTCGCCAAGCAGCTCCGTACCT 7967269 29 89.7 32 ............CT...........A... TCGAGGGCGCGGGCGAGCGCCTTGAGGTCCCG 7967208 29 86.2 32 ............CT...........A..C CAAACCTGCTGGGTGGGCCGGGGCGCCCGGGT 7967147 29 89.7 32 ............CT...........A... CGCGCCAACCGCAGGGGAGACGGACATGAAGG 7967086 29 86.2 33 ............CT...........A..T TCGTCGGCGTATACGTGGAGGCGAACGCCATCA 7967024 29 96.6 32 .........................A... CCAGCCCATCGGGAGGCGGATGGTGATGGCCG 7966963 29 93.1 31 ............C...........G.... GCGTCTGCTTCTCACTGGGTTCGGCGGTGAG 7966903 29 100.0 32 ............................. CTGACGAGCGGGCCCTGACGATGGCCGACATC 7966842 29 96.6 32 ..........T.................. GTGGCGGCAGCGTGAACGCTCGGTCATCGCTC 7966781 29 86.2 0 A..T.......................AT | ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 32 29 88.2 42 GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Left flank : AGAGGTTCTCTTCACCGGATTCGGCCTGCATCAGGCAAAGGGCGGGGATGCTGAGGTGTTCGCCGGGAGTGTTTGCCATGTTGCCGGCCAGGAGGTTCAGCGTTTTGTGGCCGCCGGCGAGTGCCCTGACGGCGCTGGTGTCGAGGATGATCACGCTGCGGTGCCCCGGGCGGCCCTGACTTTCTCAGCGGCGATCTTGTAGATGTTGCCGAGCACGTCGGGGGCTTGCTCGAACTCCTCCTCGGGGATGTCCACGCCCATCATGCGGCGTACGACCTCCCGGTCGGCGGCCAGCCGCTCTGCCCGCTGGGCTGCCGTCGGCTGCTGGGCGGCGAGCGCTTCGACCAGCTGGCCGATGCTCACGCCGCGCTCCTTGGCGAGCTCGGCAAGGTGATCGCGGGTCTCCCGCTGTACCTGGATCGTCGTCGAGGCCATAGGTAGACTATAGAGGCTTTACAGTGGCGGCGCCTCCGGGAAGATGAGCCGGGCAGAAACGTGCA # Right flank : CAGGACACCGCACTGGTCACGGCGAGTTCTTTAGCCAGATGCCGGCGCAGACATTGCGGTGCGGCAGCGCGTCACGGCCGCACCGCACGCCGCCAACACCGGAGCAGGTTGCCGCTCCAGCCGCTTCGCCAGGGCGGGACGCTCCACTGCCACCAGGGCGGCGGCTGCTTCGGTGCGCCAGTTTTGCGCAGGCCTCGCGTTCGTGCTGTGCTCGCCGCCCGCTATCTCAGTTCTTGCCCCGGGCGGGGTTCCGCTTCGCCCATGGCTGTTGAGCGATGCCGCGGTCCTTCATCTGCGCCACGACCTTGTCATGCCACTCGCGCAGCCACTCCAGGTCGACCGGTAACGGCAGGGTCGCCACAGTGGCGCCTTTGCGGCGGGTCAGGGTGGCATCCAACTGTCCGTTGCTCGTCTCCCACACCCTTACGGCCAACGAGGCCCGGTTGGTGTGCACAGGGACTTTAGATGCTTCCTGTTCGACGATCATGCGAGTGAGGTTG # Questionable array : NO Score: 3.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:-0.84, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7982581-7981559 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSGX01000001.1 Streptomyces sp. 2321.6 Ga0151170_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 7982580 28 85.7 33 ...TTA..................G... GACCAAGGACGCGGCGACCAGAGCGCGCGAAGG 7982519 27 78.6 28 ....T...........T.-..CC..C.. CCGGCCGACTCTCGCCGGACGCTGAGGA 7982464 28 82.1 119 ....T....A..............G.TT GATCCTGGCCAGGTAGTGCCTGCGGGAGCCGTGTGGCCCGGTAGATTCAGGCGGGTGCATGATCGGCGTTCCTTGAATCACGAATCGGCAAAACGCTCTTAACGGCGCAGGTCGCGAAG 7982317 28 100.0 33 ............................ GATGCGCGAGCTGAACAGGGCTAGCGAGGCCAA 7982256 28 100.0 33 ............................ GTGGTGCTGTGTTGCTCTCCGATGATCCCACGG 7982195 28 100.0 33 ............................ GGGCGGCCGCGTGCTGGTGCTGCTGCCGACTCT 7982134 28 100.0 33 ............................ GCAGGCGAACGAGCGCAACGGCGACCAGCTCAC 7982073 28 100.0 33 ............................ CCGTCACCGCACGAGGAGAGAGCAGTGAACGAC 7982012 28 100.0 33 ............................ AATCCAGGTGTCCGCGAACCGGCAGGCCGACCG 7981951 28 89.3 32 ....T.......A...........G... GCTGAGAGCCCCGCGGTAGCGAGGCCCCAGCA 7981891 28 85.7 33 ....T.......A....A......G... GTGGCTGCGCCGGCTGGCGGCTAAGGACCAGCA 7981830 28 85.7 33 .C..T.......A...........G... GGCCGAGCAGAGCATGGCTGCACAGCCGACACG 7981769 28 89.3 33 ....C.......A...........G... ACGACCGCCTGGGGCAGCACGCCTTCGAGGACC 7981708 28 96.4 33 ....T....................... GTCGGGCCCTGCGCACTCTCCGCGGCCGGGCGG 7981647 28 89.3 33 ....T.......A...........G... GTAGTCGGTCACCCGCTTCGGCCGGGGCGGAGC 7981586 28 85.7 0 ....T.......A............A.T | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 16 28 91.7 38 GTGCGCTCCGCGGAGGCGGAGGTGAGCC # Left flank : CGGATCCGCACGGAATCCAGCCAGGGGGTCACCGCCTGGGTTCATGACGGCAACACTTCCTGGGCCACGATCGTCGCTTCCGAAGCCGGCCGAACTGTGGCCTACCAGGGTGGCCCGCGGCGCTTGGCCACCGAGCTGGGAGAGGCCTGGCATGCATGGGAGACGAGCGGCGCTCCCGGTCTGTACGACTACGGCATGACACGTACTCCAGAGGAGCAGTACCTCTGGAGCAACGATCCCGACACCGGCCCACGATGGCCAACAGCCGCACCTCTGCTCGGCACTGCCAAGCAATAACCTGCGCCAGCCTGGGTGGTGCACTGCCCGGTCCAGCCACTCCTGTGAGCTCGGCTGTGGCTCCACCAGGATTCCACCAAGTGCTCCCCGTGCCCGAGGGGATGGTCCCCGCGGCGCGCAACGCAGCCCGTGTGTCGAAGGCCTGCTCCCCGCACGCGCGGAGGTGGGCCGGCGGCGGCAGAGAGACTACGAAGGCGGCGACA # Right flank : GCATGGTTGAACCGCGGGCTACAGGCCGTTGGTGTCCAGGTCGAGGCCGAATGGCTCCGGGATCCGTACTGTGGTGCCGTAGGGGTGGGGCCGTCTGCTCGTGTGTAGCCGAGTTGGCATGGCTCCGAGTACAGAGTTACCGAACGCTCTTGACGGTCGACCAGTAGGTAGAGCGGCGCCCCGTACTCCGCGTACCGACGGCGTTTCACTTTCCGCATTGGACTCGCTGGTGACCTCGACGACGAGGAGTGTGTCCGAGGGCAGCAGTGCACCAGCGCCCTTTGCGACCGCGGCGGGTACCACCGCGATATCTGGTACGTACCAGTTGCTGGACCCGGGCAGGTCGAGGTTGCCGGAGCCGGTGACGCAGTCGAGTTCGCGGGCGCGGGCTCGGATCTGGTCGCGGATCGTCTCCGCGGTCGTTTCGTGGTCCCAGGTCGGTGACACCGGCTCGATGACGCCCTCGACGATCTGGGCGCGGTCGCCGCGGATGTGTTGGA # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.50, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTCCGCGGAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTCCGCGGAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [15-15] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 7984487-7984178 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSGX01000001.1 Streptomyces sp. 2321.6 Ga0151170_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7984486 29 100.0 32 ............................. GCAGGCAACTTGCCGCTCATAGCAGCCCCGTT 7984425 29 100.0 32 ............................. GTGCCGCGCTGGGACGTCCGGACGTAGCCCTC 7984364 29 100.0 32 ............................. GCAAGGGAGCCTTCGTTCGCGATCCGGCAGAC 7984303 29 100.0 32 ............................. AACACCACCGCGGACGTGAACACGCCTACCTC 7984242 29 96.6 7 ............................C ATTCCTC Deletion [7984207] 7984206 29 79.3 0 ............C......G.A..GT..C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 27 GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Left flank : TTGTCATGGTCGAGCCTCTGCTTCTCGACTCCCGCGGCATGCGCATATCCAGGGTCGCTCACGAGGTCGGCATAGGCCTCCCGCGCCATGACCTGAAATGCCGGAATGATCTTTCCGACGTCATGTAAGCCGGCCCACACACTCACCAGGCCCCGAACCTGCCCCTCGCTAAGGCCCACGGCACCAGCCAGACGCGCTCGCGCAGCATCCGTCAAAACCCGGTCCCACAGCACACCGGCAACCGCCGCAGTGTCCAGCAGATGACAGATCAACGGATACCGACGTGCCAGCCCCCGCTCCTTACCCCACAACCGCCCATCGACCACCGGCTCCGACATAGCCCACCCCCATCACGACGCTGTGACAGCAACAGGCATACCAGCGCCCACTGACAACGCCCCCACACAGCGCTTCACAGCGGTAGATTCACGCACATGCACAACCCCCGCCCCTTGAGTCAAGAAAACGCAAACCGCCTCTAACGCCGCAGGTGGCGAAGG # Right flank : CCGCTCAAGGCGGTGCGGGTGCGCAGGGGGAGCGATCGGATTTGGTCACGGTCCGCGATCGACCGGTGTGCGGCGCCGGTTGTGCGCCACGATGGCCGAGGTTGTTGTCTCGAGGAGGAATGTCCGTGGGTGACCACCGTAAGTCCGATCCGGATCCAAGCCAGGGCAAGCCGCCGCCTGGGAACTCTGACGGGAAGGTGCCCGACCCGCCGCCCCCGTCGGGAAAGCGGCGGAAGTAGGCGTCCTCCATGTCTGAACTCTGCGAGCTCCAAGGCCGCCTGGAAAGCGCCATGGAGGCCCAAGGCATCTGGCCGGCGGACTCGCCCTGGGTCCGCCGGGCCGCGCAGGATGCTCCACGGCACGCCTTCGCCCCAAATCGCGTGTGAGATTGGGACGGCGACATCTACGCCCCGGTCGACCACGCTAGCGATTGCGCTCGGTGGGCGAGCCTCGTTTACGGCGGCGTCTACGACTCCACCATCACCCAGGTCGCCGACGGC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.52, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 7994049-7994511 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSGX01000001.1 Streptomyces sp. 2321.6 Ga0151170_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 7994049 29 100.0 39 ............................. AACGCCCCGCGCGTGGTGCTGTTGTTGTGGACCTCGGTG 7994117 29 100.0 32 ............................. ATCGACAGCCACGACCTGGGCGAGAAACTGGG 7994178 29 100.0 31 ............................. ACGAGCGTGCCGAGCTCGCGGAGGTACTTCA 7994238 29 100.0 33 ............................. GCCGTGGTGACCAGGGAGGGGCGGGAGCGCACC 7994300 29 100.0 32 ............................. GCTATCTACGATTCCGCGAACCTGGACGACGA 7994361 29 100.0 32 ............................. GGGGCGAGGCGCACTTGAGGTTCCGGGGCGTG 7994422 29 96.6 32 .....G....................... AGGTAACGGGAGGCGGTGGCCAAGTGCTTCTC 7994483 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 99.2 33 GTGCTCTCCGCGGGAGCGGAGGTGAGCCG # Left flank : AGCGGCTCCTTGAACCCGACTCCGCCGCGCAAGAGCCAGAGGACTTCGAGGACGAAGTGGTGGACCTGTGGGACCCGGTAACGGGAGCCGTGCCCGGCGGCGTCAACTACGCCGGCGCACGCGAAGAACCCGGCGCGGCAGGCCGGTGACCCATGCCGTCAATGATCACCCTGTCCGTCACAGCCGTCCCCGACCACTTGCGAGGAGCACTGACACGCTGGCTACTGGAAGTCACACCTGAGCTATACGTCGGAACGGTATCGGCAAAGGTCAGAGACGAACTCTGGGCAGCTGTCACCGACTGCACAGGGGACGGACTCTCGGTAATGGTCTATCCGACCGACAACGAACAAGGCTTCACCGTGCGGATCTCCGGACACCGCCGCCGCCACCTGCGTGACTTCGACGGGCTCACGCTGGTCGCCTTCAGCTCACCACCCACAACGGGAAAACCAGATCACGAAATTGCAAAGCAGCTCTGAAAGTGGAGGTCGCGAAGG # Right flank : GCGCCGGGGCCGGTACAAGGCGCTTTCCGAGGCGTGCTCTCCGCAAGCGCGGAGAGCACAAGGTGGGCTGGGTTCCGGTCGTCGGCCGCGGCTGCTCACCTCCGCCTGCGCAGAGAGCACCGGGCAGCTGGACGGGAACAACCGGACCGGCCGGCTCACCTCCGCCTCCGCGGAGAGCCCCGTATAGGACCACCCCCACGCGTGCGGGGAGCAGGAGTCCGGAGCGAAGCGGCCGTCACCGGAGGTGGGACCATCCCCACGCGTGCGGGGAGCAGACTTCGTGACCTGCATCGTTCCATGCGCACCACCTGGATTTGAACCACGCGGACGTCCGGCTCGGGGCCCTCTCCACCGGTCAGGGCAGGTGGAGCTGGCTGCTGGCCACGCGCCGCCGACGAGAGCACCTCCGCGGATCCAGAAACACAAAGTTCCTCAATTCCGGCCTCGACGCCAGGGACGACACCCCCGCGAGGCGGGGAGCGGAACCGCATGGTGGCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //