Array 1 45076-43413 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWAF01000022.1 Salmonella enterica subsp. enterica strain 148_17 NODE_22_length_95562_cov_89.458_ID_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 45075 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 45014 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 44953 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 44892 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 44825 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 44764 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 44703 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 44642 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 44581 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 44520 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 44459 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 44398 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 44337 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 44276 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 44215 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 44154 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 44093 29 100.0 31 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTG 44033 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 43972 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 43869 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 43808 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 43747 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 43686 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 43625 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 43564 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 43503 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 43442 29 96.6 0 A............................ | A [43415] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61910-61334 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWAF01000022.1 Salmonella enterica subsp. enterica strain 148_17 NODE_22_length_95562_cov_89.458_ID_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61909 28 96.6 32 ........-.................... CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 61849 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 61788 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 61727 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 61666 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 61605 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 61544 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 61483 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 61422 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 61361 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGCAACGCCAACGGTTTACAGATGTTTGACGAGAGCCTTACCGACCAGGATTTGGAAGATATGGAACTGGATGATCGCTGGATTGATTGGTATAGCGAGTGCCAGTGTTACGACGACCCGCGTGAATATCTCGAAAGCCTGAAAGAAGAAACGACAGCCGCCTGAGTGCGGCTTTTTCATATCCGCATCTGAGTGAGTATTTATTCAAGTGCTCAGCCTCATGCAATCACACACAACATAAGGAACTCCCATGATTATCGCAATCGCGGGAAGCGCTCGCATGGGCGTTTCCCAGTTACACGAATCACTTTTAGATCGCATCACCCGCAAATTACGCGCTGGCTGGAAACGGCTGGCAGACATCCTTAATCAGCCTGGAGTGCCGAGCCATGACTATTGTGCCTGTTAACGGAACCATCCTTGTGCAGCAAGGCAATCGTGAGTTTAACAAGCTCTACGAAGAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 493-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWAF01000002.1 Salmonella enterica subsp. enterica strain 148_17 NODE_2_length_335356_cov_91.1016_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 492 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 431 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 370 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 309 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 248 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 187 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 126 29 89.7 30 .........................C.GA AAAAACAGAGAACGGCAAGCGGCACCTCAA 67 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCGTGTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //