Array 1 5813-4188 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019795.1 Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5812 29 96.6 32 ............................A ATCCAGTCGCCCACGGACATCGCTCGGCTGTC 5751 29 100.0 32 ............................. GGGTTTCCTCAGCCTCCACAGTGGGCCCAGGA 5690 29 100.0 33 ............................. TCAGGCAGTTCTTCACCACAGAGGGGGAAAAGT 5628 29 100.0 33 ............................. GAGATGGAAGATGCGTAGGTTGGCTGTCTTGGC 5566 29 100.0 32 ............................. ATATGGACATTCCCGGCAGCGTTCGCCTCTCA 5505 29 100.0 32 ............................. ACCCGTTCCAGGCGCTGGACCAGATCCCCGCG 5444 29 100.0 32 ............................. GGACGCTACGCGGCGGCGGTCCAGGCGATTGG 5383 29 100.0 32 ............................. CGGATGGCCGCCGCGAGGACGGGCCCCACCAC 5322 29 100.0 33 ............................. GGGGACGTGGAGAGTGGGGTCATCGCCACCCAG 5260 29 100.0 33 ............................. TTCTTGACCCCGGAGGCCATCCTCGAGGCCCAA 5198 29 100.0 32 ............................. AGGGGAAGGCGCCTTCTACGAGAAAGGGAAGG 5137 29 100.0 32 ............................. ACCAGCGTCCCCGTGGCGATAAAGAGGAGGCC 5076 29 100.0 33 ............................. GTGGACTGGAGGAACCTCCTCCGGCACACCATC 5014 29 100.0 33 ............................. TTGAGCCAACGCCGCCGTCAAAAGAACCGCCAC 4952 29 100.0 33 ............................. CTCAATCTGGCCGATAGGTCCATACCAGCCATC 4890 29 100.0 32 ............................. AGATTTCCCGGCCGGGGCCCCTGCCCCTTCAC 4829 29 100.0 32 ............................. GGGCTCGTCCGCAGCTCCACCAACGAGATCAT 4768 29 100.0 33 ............................. GTCCACGCGGAGCGCCCCGAGTGGCCCAAGGGC 4706 29 100.0 33 ............................. CTGTAGGGACCGATCTGAAGGAGCAACATCTTC 4644 29 100.0 32 ............................. CAACCTCCAGCGGGCCCGCAGACCAGACGACC 4583 29 100.0 32 ............................. ACCTGGCGGCGGGGATCCCCGCCGCCGGGGAC 4522 29 100.0 32 ............................. ATGGAGGTCATCCGCAAGGCCGTGGAAAACAA 4461 29 100.0 33 ............................. AAGGTTATTCACTCCTTGGCCTCTGCCCCGGCC 4399 29 100.0 32 ............................. GCGCCCTTGGCCCTCCAGTAGGGGAAGAGGTA 4338 29 100.0 31 ............................. AGCGCCGAGACCGTGGAGGAGTCCCGCAAGC 4278 29 100.0 33 ............................. CTCTTCACCCAGGACGGCGTGAACCCGTTCGCC 4216 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.9 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GAAGCATGCGGGCGAGTTTGTCCAAGGCCATGCGGTACTGGCGCGTGGGGGCCTGGTGGTAGAGGAGCCTTCCCGCGGCGAAGAGGGCCAGGGCCTCTATCGGGTGGAGGGAAGGGGGGCGGTCGGCGATGCGGTAAAGCCCCCGGGCCAAGCGCTCCACGGGAAAGCCAAGGTCAAGGAGGGCCTCGAGGTCCCGCTCCACCGTGCGCTCGCTCACGCCGAAGCGGCGGGCGAGTTCCCCCACCCGCATGGGCCTGAGCTTTAAGGCCTCGGCCATCTGCAGGAGGCGGGCGCTCTTGGCCTCTTGTCCCATGTGTTCATGCTAAGCAAGCCGTTTGGGCCAGGGTGTGATTTTTGACCATGCTATACTGGGACCAGCGCCCACCCTGGCCTTTTCCCCCCCGTTCGGGCGCTGGGGAACTTGACAGGAAAACCTGCAATCCTTCCTAAACAGACACATAAAGGGGGGTGAGCGGGCGTTTTTGCCGTCCTGGTCATGT # Right flank : GGCCCACCTTGCGCTCCGCTTCACGGTAGGCTACCCTGGAAGTAAACCCACCGGGCTGGGCCTGGGTTCCCGATAGCCCGGTGCAGGACGCGCGGCCCTCCAGGGGGCCGTTGCCCGTTTTTCAGGACACCCCCACCAGACGCCTTTCCGTCCGACGGAAGCTTCCCCGGGCCGTAGACTGCCCTCATGAAGCGAAACGCTTGGGAGGTGTACGGCGAGGTTCTTAAGACGGCCCGGGAGCTTGGCCTCGAGGGGGAGGAGCAAGAGGTGGCCAAAGCCCTCCTCGCCTGGCCCAAGGAGCGCTTCCACGCCTTCGCCGCCCGGGTGGGCCTTAAGGCGAAGTACCTGCGGCACGACCTTCTCCCCATCGCCTTCCTCCCCGAGCCCCTGCGGGAGGCGCTCCAAGGGGGGCTTCCCCTCCGGGAGGCCCACAGGCTCCACCGGCTCCTGAAGCGCGGGGAGCTTTCCCTTCAGGACCTAACGGGCAAGGACCCCAAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15560-16509 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019795.1 Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15560 29 100.0 32 ............................. TCGCCTGGACCATCAGCGAGCTCGCCGAGGTC 15621 29 100.0 33 ............................. CTCCTGGGCGAGTTGGACGAGCGCCCGCACGTC 15683 29 100.0 33 ............................. TCCACCCCGGCGTAGTACCGCCAGAGGATGACC 15745 29 100.0 32 ............................. GTCTGGATGGTGTGGGCCGTGGTGTACAGCTC 15806 29 100.0 33 ............................. GCCCTCCGTGTAAGAGGTGCGGATTTTGTGGGC 15868 29 100.0 33 ............................. CACTGGTGGCATGTGTTGCCCGGGGCGCTCCGC 15930 29 100.0 33 ............................. AGGCCCTATCCGCCGTGGGGAAGGACTGGAGGC 15992 29 100.0 32 ............................. TCCTGGGAGGCCCCCCAGGACCTCGCGGACGA 16053 29 100.0 32 ............................. CTTTCCTCACATTCTGGCGGAAAGCTTTGCTG 16114 29 100.0 32 ............................. AATCGCCTTGCGGGTAGAGGCGTCCGGCACAA 16175 29 100.0 32 ............................. CAGGCAGCGTAAGACGCAGCCCGTCACCTGGC 16236 29 100.0 33 ............................. GAGGGAACCATGAAGCAGGTTAGCACGCAGGCA 16298 29 96.6 32 .......T..................... TCCGGGGCCTCCTCCCCACCTTCTAGGGGCTC 16359 29 89.7 32 .............AC......G....... GGGAGCGCCCGGCACCTCGCGGCCTTCAAGGT 16420 29 93.1 32 .............AC.............. ATCTCCGATCTAGAGGCTCAGGGGGTGTTCTG 16481 29 86.2 0 ........T....CC..........G... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.8 32 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : AGACCCCACCCGTCCTGGGGGCCTATGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGATCTTACCCGTTTTCTGATAGAGGTGGACACCGGGGTCTTCGTGGGCCGGATCAGCGCCACGGTGCGGGAGCTCCTTTGGGAGCGGGCCGTGGAGAAGGCCGAGGGCGGCCGGGTGGCCCTGGCCTACCGGACGAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACCCGGACCGCTTCCTGCGAGACTTTGATGGTATAGTGCTGGTGAGCGTTCGGAACGCCGAGGCGGCGCGGAAGGCGGAGAAGCTGTCTAGGCAAGTTGAGAGGTACAAAAAACGGCTTGCCAAGGGTTCCGAAGGGGATCTTGAAAGCCAAAGTCCGTAACTGCTCCCGAATAGACACATAAACGGGGGTGAGCGGGCGTTTTTGCCGTCCTGGTCATGT # Right flank : GGCGCTAGAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGTCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTGTCGGCCCGCACCTCCACCTCTCCCCCGTCCAGGGTCTCCACCTTTCCTTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCTGGCATGGAGCGGGGGGCGAGCTGGCCGTTTCGCAGGTAGGCCCTTTCAGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCTTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTCTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGAAGGCCCTCCGCCTTGAGGAAGGCGGAGAGGGCCCCGATCTGGTAGAGCACG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 34770-35110 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019795.1 Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 34770 36 100.0 39 .................................... GAGGTGCGAGATGCGTAACTGGCGCGCGGCTTGGTACGA 34845 36 100.0 38 .................................... TGAGCCTGAGCCTGTACCGAAGTCTTCTTTGCCATAGT 34919 36 100.0 43 .................................... CCCTTGCCGGAGGCGTAGGCCTTGAGCGTAGCTTTCACCCCTC 34998 36 100.0 41 .................................... TACCTAAGCCTTACCATGGGTAGCGATCCCAATACTCCTCC 35075 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 98.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGGGGTTTTCCCGTCGGGGGACGGGGCATGGAGCGTGCACCCGTCCAAAAATTGGGCCGCCAGCCCCTTGGGGGGCATGGGCACGGGCCAGCCCGTAGGCTGAAGGTGGCCTTTCTGGGGCGGGGGGAGTGCACGCCCTTTTACCTTCGGGGCTAGGGGGTACTTGACACGACGGAACAGGCGTTTTTCACGCTTTCACAAAGCGAAGTAAGTTGGAAAAGGGGCTTTTTGGGGCAATTTTGGACGGGGTGCACCGTTTCAGCGAGATGCTATAATGCCCTTGTCCGGACCACCGGACGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCACTTTTTCTTTTCATCGCCCCTTCCTCTTGTGGCTTTGCATCGGTGTAAATCCTCAAAAACCCCTGTTATTCGCCGTGTGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTAGCGGCGCTGTCCAGGACGGAGTTCTTTGGGGGGTACA # Right flank : CTGTCTTGCTTGTCAAGCGACCTCTTGGTGCGGCTGGGTCGCGTAGTGCTCCCTGAGCCGTCCCATCGTTCGCGCAACAGCTTGTGCGCTACGGCCAAAAGCGCCTGCCTCGCCGCCCGGAGGGACAAGAACCCCCTTTGGGGGCCCTATTTTCGCGAAAGCTACGTTTCGCGAAAAAGAGACTCCACTGCCCCACCCCGCAGTTTCTTGGAAATCCACCGGCACTAGAAAGGACGGAGAAGCCTTTCGGGTACCCACCCCTTCCCAAGGACCCGCGGCCCTCCCTTCAAAAGGGTGGGGTTCCTGCCGGTTATCCGGCAGGAACCCCAGGCGACCCGGAGCCTCTTACCCTACGGCTTCTTGGACGCTGCGGGCGCGGGATGGGCCGCCTTCAGGAACACCAGGCTCCCGTCCTTCCCCAAGGCCACATGCCGGTTCTTGAGGAGGACGCCCAGGCTATAAACCCGCTTTCCCACCTTGACGACGAAGGCTTCCAGCTT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //