Array 1 332299-333460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072378.1 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 332299 37 100.0 37 ..................................... CCTGATGGTTCGATAACGAAATCTACTTCATCGTTCT 332373 37 100.0 38 ..................................... ATTTCATAGCACCGCAATTTGGATATTGTTTTCTAAGT 332448 37 100.0 36 ..................................... AGATGAGAAAGCTATGGATAAAACAATTAAATCATT 332521 37 100.0 39 ..................................... TTGCTAGTGTCCTCTTGAATGAATAAGTTTTTCTTGTCT 332597 37 100.0 37 ..................................... GATTCAATCGCATACAAATCGTCATAAATCTTACTAC 332671 37 100.0 39 ..................................... ATACTGTAACTTTTGCGTTTTCCTTAGGTGTATTATCTT 332747 37 100.0 38 ..................................... CCACAGATTGAATCAACAAATGCGACAAGATGTGCAAA 332822 37 100.0 36 ..................................... GATCCATCACCATATCCTTTGAACCATCCTTTTGAT 332895 37 100.0 37 ..................................... TTTTAACTCCATACTTTTTGTTTGTAATTTGTAAGTA 332969 37 100.0 37 ..................................... TCTAAATTGTCTTCCTTTTTCTAATGATACTCTTTTC 333043 37 100.0 40 ..................................... ACGGTAGAGTCTTCAAAGAAACAAAAAAAGAAAGTGCTCC 333120 37 100.0 38 ..................................... ATGAAGTTTTTAATTTCAGGAATTATTTCCTTTTGGAA 333195 37 100.0 40 ..................................... GCTGTTCCTGTTATTTCCCAACCGTATTCTTCTATAAACC 333272 37 100.0 40 ..................................... CCCTCGTAAAGAAGTATTTGTCTTTTAGCATGTCTTTATA 333349 37 100.0 38 ..................................... CTTCAAATGCATGTTGTTGTCGTTCTTTTTGCTTATTG 333424 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 99.8 38 GTTAAAGAAGTGAATCCATTAAAACAAGGATTGAAAC # Left flank : TTAGATGGTTTATCATTAAAGAAAATAGAAAGTACAAATAAAGATTTGGAAAAAGTAAAAGAAAGTGCTGCTGAAGTATTAAAAATAATTGAAACTGAGCGATACCCGATAGAAGCAGAAGGCGGAACAAAATGTCGAGATTGTTATTACAAAAAAATTTGTGGAAGATAATATTAAAAAATAAAATAGAGGAAATCATTTTTTAGTAAAATTATCAAAAATAGATTTTCTCTTTTTTTTGCAAAAAAATCAAAAAAAATTTTGAAAAAATAAAAAAGTATGGTAAAATAAGTTCGTGGTAAAAATTCCTACCACTATTAAAAATAAAAAAAGAGAAAGAAAATCTACTCAAAGTCAATAAAAATGAGGGTTAGGAGTTACGGAAAATGCTAAAAAAACAGCAAAAAATGATAAAAATTAATCAAAAAAATACGATTTTAATGTTTGAAAAAATCTCTGTAGCACCTATAAATAAAGGATTTTCTTGAAAGTATGGGATA # Right flank : TAGAGTCAGAATATAAATTAAAATAACAACTTTTATAAGGTTGTTATTTTTTTTAGAAAAAATAGGTGAATTATTAATAAAAATAGGTTAGAACAATGGTATATAATAAGATTATAAAAGAAAAGGGAGTGAGAGAAATGGTTAAATAATGAATTAGAGAAATTGTCGAGCATATTTATAAAAAATTATGATAATTTTTATTACTTTAATTAGATTTTTGTTAAAAAAATTTAGTGAAAAATTGTTATTTCTTAAGAAATGTGGTATAAATATAGTAATAAAAATAAAATTAGATGGATATATATAACAATGTTAAATATAAAAAAGGAGGAGCGATGTTTAAGTTAGAAAATATGGAACAAGTTGTTTCCTTGGCTGGACTGTTACATGATTTTGGAAAGTTTACAAATAGATCATCAAGTTATGTAAAAAATATAAAAAATAAAGAATATAGAACATTTAAGCATCCTGTGTTGTCAAAAGAATTTATATGTTTTTTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGAAGTGAATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 421356-420495 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072378.1 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 421355 37 100.0 37 ..................................... TTTTAACAAAATCAATATAAAGTTCAATTTCTTTTTC 421281 37 100.0 36 ..................................... CTGGCGTTCCCAGCACCCAAATTTCTAAAAGTATTG 421208 37 100.0 38 ..................................... TGACGCTTTTATTTAAAACCTCTACATTTTCACGAGCG 421133 37 100.0 35 ..................................... CGTATTGTATCCCATTTTATTCATCCTCCTTGGAT 421061 37 100.0 39 ..................................... GTACACGTCGAAGTGACAGATGGTAAAATATTTCGATAG 420985 37 100.0 39 ..................................... TCTTGTAGAAAATTCTCTGATAAGCCTAGTGGTGAAAGT 420909 37 100.0 39 ..................................... CTGGAGTTAATTTTTCGATATTATTAAAGATGTACCAAT 420833 37 100.0 39 ..................................... AACCATCATATCTTGCACTGCCTTTGTCTTTTCGATAGG 420757 37 100.0 38 ..................................... GTTGTCTAATATTGTTTGTACAGCTGATTGAATTACAG 420682 37 100.0 39 ..................................... ATTTTTCTTCTTCTACAATTTCTATTTGTGGAGTAATAT 420606 37 100.0 38 ..................................... TTGATACCCCATATGAACATCCTTGAATTCTTTAGGAA 420531 37 86.5 0 ..A.G.AT..........................A.. | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 98.9 38 GTTAAAGAAGTGAATCCATTAAAACAAGGATTGAGAC # Left flank : TCCCATTATATTCAACATTTGTTTATTCTTCAATTGCTCAAAACCGTTAGAAATAAAGAAATCTAACGCTTCTGGATATCTATCCATAATATCAAACAGCGTATCTGTCATTTTAAAAAATTTATTTTCCATTATTTAAATTTTCCTTTCTATAAAAATAATTATTTAGTTTTTCAAATTATTATATCACAATAACAGTTCTAAAGATGTTACAATTGTTACAAATTTCAAATTTTTTTAAAAAAATATTGTGATTATCAAAATCAAAAAAAATTTTGAAAAAATAAAAAAGTATGGTAAAATAAGTTCGTGGTAAAAATTCCTACCACTATCAAAAATAAAGAAAATCTACTCAAAGTCAATAAAAATGAGGATTAGGAGTTACGGAAAATGCTAAAAAAACAGCATAAAATGATAAAAATTAATCAAAAAAATACGATTTTAATGTCTGAAAAAATCTCTGTAGCACCTATAAATAAAGGATTTTCTTGAAAGTACGT # Right flank : ATTGAGTCAACTATTAATTTATTAATTTGGGTGTGTAAAAATTTTTGTGTAAACCTCTAAATAATATATGGTAAAATAACTATATAATATTTGGAGGTTTTTGTTATGGCTAAAAAGAAAATTGACAACGAAATTTTTAAAACATTGATTGAGGATTACAATATTAAAGATACTAATGATATTAAGGATATGCTTAAGGATTTTCTTTTGGGTACTATTCAAACTATGCTTGAAGCTGAAATTGAGCATGAACTGGGATATGCTAAACATTCTCTTAGGGAATGGCAGTCTAGACAGCTTGAGGATGTATATCCAATAGTTTTTATGGACGCTATCCATTACAGTGTAAGAAAAGATGGAGTTGTTGTTAAAAAGGCGGTATATTTAGCTATAGGAATAGATAAGGAAGAAAGGAGGTTTTAGGATTTTGGATAGGAGAAAATGAATCAAGCAAGTACTGGCTAAATGTTTTAAATGAATTGAAAAACAGAGGGGTTCAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGAAGTGAATCCATTAAAACAAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 960735-963689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072378.1 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 960735 29 100.0 38 ............................. GAAAAAAATATAAAAAGAATATATGGTATAAGTCTAAA 960802 29 100.0 36 ............................. TACATCATCACAACTTTTTCTGTATTCTTGTCAGAG 960867 29 100.0 36 ............................. ATTTACATTATCTACATATTTTGAATATATTTCATT 960932 29 100.0 36 ............................. GTTACACTACAAGTGATTTTCATCGGTGTTGATGTG 960997 29 100.0 36 ............................. CGTCAAACAATTTTTCTCTTAATTTCATTCGCTCCT 961062 29 100.0 36 ............................. GGGGTACATTTAGAAACGACTCAAAGTTTACTAATT 961127 29 100.0 35 ............................. TACCGAAAAGCACGATATTGGAGTGGAAGCATTTG 961191 29 100.0 36 ............................. ACGATTTAACAAGTATCTTTCATTTCTTCTTCTTAA 961256 29 100.0 36 ............................. ATTAAAGTTTTGTCAGCTTTAGCAGAAATATTTAAT 961321 29 100.0 36 ............................. TGATAAAACACTATTTTCATCATATTGTTATAGAAA 961386 29 100.0 36 ............................. TATTAAATACAATATTGTTGGAAATAACCTTGTTTT 961451 29 100.0 36 ............................. CTATTAAATTACTTTTCATAGTCTGCCATCTCCTTG 961516 29 100.0 36 ............................. ATAATAAGTACTTAACTCATACTCTTTCATCTTGAC 961581 29 100.0 36 ............................. TATTATTTATTTCTTCTAAATCTTTTTCAGTCAACC 961646 29 100.0 36 ............................. TTTATTTATTCTCCTAACTTTAAAATATTTTTTTAA 961711 29 100.0 36 ............................. CCGTGAGAACCATCTCCAATATAAATACTTGATGTT 961776 29 100.0 36 ............................. TATAATTCTTTCTCTTTTTCTGTTAAATGTTCTCTC 961841 29 100.0 35 ............................. TAAGTTCCGCAAAGAATACTCTTCCGTTATTAAGT 961905 29 100.0 36 ............................. CTAGAACTTTTATCTTTTTTAAAACTTCTAAAGTCT 961970 29 100.0 35 ............................. TTCTCATACAATCTTTTATACCCTTCAATAATTAA 962034 29 100.0 35 ............................. TATTTAACAGAAACATTAGATAAGAGAGCAAATAA 962098 29 100.0 36 ............................. GTTCTTATCTATATATCTAAGTTCATCTAAGTTTAA 962163 29 100.0 37 ............................. TTGCAGCAGATGTAAAACAAGGAATTATTGTAGCAGA 962229 29 100.0 37 ............................. TTCAAGAGTGTTGTCAATCTTTTCTAAAATTTTATTG 962295 29 100.0 36 ............................. GCAGTTCTACTATGTTTATGTAATCTCTAGGCTTTT 962360 29 100.0 36 ............................. TTTTGGCTTTAATTCGTGAATAAATTCGCCAACCTC 962425 29 100.0 36 ............................. GGTTACGCAAGACATTTAGACAGAGATAGAGATGGA 962490 29 100.0 35 ............................. ATTTTTTCTGCAAACTTTCCTTGTTTTCCATATTG 962554 29 100.0 37 ............................. CTTTGTTTTTAAATTCTAAAATTATTTCTCATACTCA 962620 29 100.0 36 ............................. TCTAACATCTCTACTCTATCATTGTTCTTTAATGCT 962685 29 100.0 36 ............................. TTTCTAAATTTCTTATATAATTCATAGTCAAGGTAT 962750 29 100.0 36 ............................. CCAAAAATTTTATTTACTTTTTTATACTTACATATT 962815 29 100.0 37 ............................. TAATGATAGTTATCTTACAGAGCCAGATGAGAAATTG 962881 29 100.0 36 ............................. ATTTCTTCATTTGATTTGTTTAATTTTTCTTCTAAT 962946 29 100.0 36 ............................. TACAAATATTTATTATTGAATTTAAGTTTTTTACTA 963011 29 100.0 36 ............................. CTATTTCCGTATTTTCCCAGTACGGCATAGACCAAG 963076 29 100.0 35 ............................. TACCGAAAAGCACGATATTGGAGTGGAAGCATTTG 963140 29 100.0 37 ............................. GCCGCTTTATTTCCTAATAATTCCTTGAATTTGTTTG 963206 29 100.0 36 ............................. GCAGCTCAAAGAGGTAAAGATTTGGAAAAAAATATA 963271 29 100.0 36 ............................. ATAAATACATCATAACTTACTAAATTATCTTTTGAT 963336 29 100.0 36 ............................. GTGGAAAAGATATAGAATTTTGTATATTGCTTGTAT 963401 29 100.0 36 ............................. TTCGTTTCTGGGATAAAAGAAGCTATTGCAAGTGTT 963466 29 100.0 36 ............................. TTTTTTTAAAGTCATTTTCAAAAAATTTGTTGAACG 963531 29 100.0 36 ............................. GTCATCAAGGCTTGTTGTTTGCTGTATCTCAAGGCT 963596 29 100.0 36 ............................. TGTTTTAAAAGTATTTATATAACCAGCTTTAGACGC 963661 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 46 29 100.0 36 ATTTAATAGAAACATTTTGTATTGTAAAT # Left flank : AAGGATTCAAAATATGGTGGTAATTATGTATATAATTTTAGTTTATGACATTCTTTCTGATGAAAATGGAGCCAGAATTTCCAGAAATATATTTAAAATTTGTAAAAAATATTTAACGAATGTTCAAAAATCAGTATTTGAAGGCGAGATAACACCAGTATTATTAAAAAAATTAAATATAGAACTAGGAAAATTTATTCGCAAAGATAAGGATTCTTTAATAATTTTTAAATCTCGTCAAGAAAAATGGCTAGAAAAAGAATTTTGGGGAATCGAAGATGATAAAACTTCAAACTTCTTTTAAACAAAATCTGTCGATCTGTAATAACAATAAAAAGCTAATACATCGACAGATTTTCGGTAATATCGACTTTTATTGGATTTTTTGATTGTTATATAAAAAGATAAAAAGAAATTCTTGATAAAAATATATAAAAATATTGTTATCGACAAAAATGAGGAAAAGTGGTATACTATATAGGTAGTTTGAGGAAGATTAG # Right flank : TGTCTTAACGGTGAAGTATTTAAAACGGAAAATGCAATGGAAGGAGAAAATTATCCGCCAATGCACCCTCGCTGTAGAAGTACAACTGTTCCTTATGAGTATTCAGATGTTTTTTCTGATGAACCTGAAAAAGAAGATTTTGAAAATAATGAAAATGAGGGTATAATCAATAATAATGGTACTGTTTTTGTTGAAGGTGGTAGATACAGAAATATAGGGAATATTAATGCAACGGAGTATAAAGATGAACCGCTGGAATTGTTGCGAAGATATGAACAAAAAATCGTTAAGAAGAGCAAAGAAAATGCGTTAGTAATAGCTAAAAATGGAGATATTTATATTTTGAAAGGAGATGAAAATTCAATACCAAGTCATAAGATGACTAAAATTAATTTTGAAGACGCTTTGTATACTCACAACCATCCTAAAAATAGTAATCACGAGTGGGGATTTAGCAATGATGATTTTAGTTCGTTCACTAATTTGAAATTGAAATATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAATAGAAACATTTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //