Array 1 522454-511857 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPY01000001.1 Moraxella osloensis strain NCTC10465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 522453 28 100.0 32 ............................ GCCTTCTGACGTAGTTTGTTGGTTTTGACAGA 522393 28 100.0 32 ............................ TGCTGCTGGTGCTGGCTATGCAATTGCTGGCT 522333 28 100.0 32 ............................ GATGAGCTCAAGGCGATTTTGACAGAACGTAA 522273 28 100.0 32 ............................ ACTGTCCTGTTTCGACATCGGCAACATAAAAA 522213 28 100.0 32 ............................ ATGCAAAAACAGTTTACAAAGCAACTGGGCAA 522153 28 100.0 32 ............................ AACTGCTCAAGCTGCTGGGTGGTCGTTTGGTG 522093 28 100.0 32 ............................ GTAAGAAATAGCCCCACGATTACCCCAAGACG 522033 28 100.0 32 ............................ TATCCCCAGCGACAAGATTTTTTTCGGTAAGC 521973 28 100.0 32 ............................ TTTGAAAATACAAGCATTTATTATTTCCGCTT 521913 28 100.0 32 ............................ GCCCACGTTATCGACTTTATCACCAACGCCAA 521853 28 100.0 33 ............................ ACTTGGTCGCCAGTGGCTACAGTTTTATTGTCA 521792 28 100.0 32 ............................ TTGATATGTCATTGGGTGAGTGCAAACAATAT 521732 28 100.0 32 ............................ AATTTATACAGGTGAAGAAAATGACTAATAAT 521672 28 100.0 32 ............................ TTTATCACCCCTTTATCATAACTGAAATAGAA 521612 28 100.0 32 ............................ ACAGCGACAACGACGACGACGACGCAGGAGGA 521552 28 100.0 32 ............................ TCGATTGGTTAACCTTTACCGTTCATGACACT 521492 28 100.0 32 ............................ TTGCTCTGTAACCAACGTATTACTGCTTGACT 521432 28 100.0 32 ............................ GTCAAAGATGACGCTTCTATCAAATTGCAAGC 521372 28 100.0 32 ............................ AACAAACCCACAAATAGATACATCATCAATCA 521312 28 100.0 32 ............................ TTATTTCTATCCAAATTAATTTTATTTGATTT 521252 28 100.0 32 ............................ CAGAGCGCGGCATTGCTTCACGTCCAGATTAA 521192 28 100.0 32 ............................ GCTTGAATTCGGACGAAGCCTTGTTGCGGCTC 521132 28 100.0 32 ............................ GCTTGATATCACGTTAAAACGAGTTGTAGTGA 521072 28 100.0 32 ............................ CGCCTGTTGGCTCTATCTTTATGTATGATGAA 521012 28 100.0 32 ............................ TATCCCCAGCGACAAGATTTTTTTCGGTAAGC 520952 28 100.0 32 ............................ TTTGAAAATACAAGCATTTATTATTTCCGCTT 520892 28 100.0 33 ............................ GCTCAAGATTAAACTCTTGATAGGTTTTTTTGC 520831 28 100.0 32 ............................ ACCCACAGCATCGACTTTATCTCCAACGCCAA 520771 28 100.0 32 ............................ AAACAAGACCAGATACAATATAACCAGCAATG 520711 28 100.0 32 ............................ TTGCCATGTCCGTTAGCGGCAGTAACTAAAAT 520651 28 100.0 32 ............................ ATTTTTATCATGGGATAATGGGGAATTATCAA 520591 28 100.0 32 ............................ GCTTTGCTACTGACATCTATCCATACCTGAGT 520531 28 100.0 32 ............................ AGTAATAGGTTTTGTTCATGCCTTGTCATGGC 520471 28 100.0 32 ............................ ATTAACAGATTAACGCCTATCATTGCCATATT 520411 28 100.0 32 ............................ TAACCAAAAATGGCTATCCCTCGAATCTGTGG 520351 28 100.0 32 ............................ CTACATTATCTAAAACGACTTGATTAGTTTGG 520291 28 100.0 32 ............................ ATTGTCTATAGCTTGCTGTATAGCTTGATTGA 520231 28 100.0 32 ............................ TAAAAAAAATTACATAAAGAAAAATTTAAAAA 520171 28 100.0 32 ............................ GTAAAAAAAATGCCTAACAGCGTAAACCGTTA 520111 28 100.0 32 ............................ AACAAATACTAAATAATGCAAAATCAGGTGAT 520051 28 100.0 32 ............................ AAATCCAATCATGAGCCGTCATAGCAATACCC 519991 28 100.0 32 ............................ ATGTAGCGCACGGCTGCTTTGTTGCGGATTTC 519931 28 100.0 33 ............................ ATCACCCAATTACCTAGCTAAAGATAGCGGTCA 519870 28 100.0 32 ............................ GTATATTGCAAGGCGCAAGATATGAAGAAGAT 519810 28 100.0 32 ............................ ACAGAGCCACAGGTCAAGCGCACCAAAGCCGA 519750 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 519690 28 100.0 32 ............................ ACAGCGCAAGAATTGATAGTAATATCTCATCT 519630 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 519570 28 100.0 32 ............................ AACCAAAACACCGCCTGTAAATAGAAGTATTG 519510 28 100.0 32 ............................ TTGATAGCCTTTTTGTCTTTGCGTAACTCATT 519450 28 100.0 32 ............................ ATTGTCTATAGCTTGCTGTATAGCTTGATTGA 519390 28 100.0 32 ............................ TAAAAAAAATTACATAAAGAAAAATTTAAAAA 519330 28 100.0 32 ............................ GTAAAAAAAATGCCTAACAGCGTAAACCGTTA 519270 28 100.0 32 ............................ AACAAATACTAAATAATGCAAAATCAGGTGAT 519210 28 100.0 32 ............................ AAATCCAATCATGAGCCGTCATAGCAATACCC 519150 28 100.0 32 ............................ ATGTAGCGCACGGCTGCTTTGTTGCGGATTTC 519090 28 100.0 33 ............................ ATCACCCAATTACCTAGCTAAAGATAGCGGTCA 519029 28 100.0 32 ............................ GTATATTGCAAGGCGCAAGATATGAAGAAGAT 518969 28 100.0 32 ............................ ACAGAGCCACAGGTCAAGCGCACCAAAGCCGA 518909 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 518849 28 100.0 32 ............................ ACAGCGCAAGAATTGATAGTAATATCTCATCT 518789 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 518729 28 100.0 32 ............................ AACCAAAACACCGCCTGTAAATAGAAGTATTG 518669 28 100.0 32 ............................ TTGATAGCCTTTTTGTCTTTGCGTAACTCATT 518609 28 100.0 32 ............................ GCTATTAGCCAAAATACTAATGTGCATATCAA 518549 28 100.0 32 ............................ CTAACGTGACATTGTAGGTATAGCCATTAACA 518489 28 100.0 32 ............................ ATCATGACCGCATCAGCCATATTTGGTGATGA 518429 28 100.0 32 ............................ CATACCGCTAACTAGCGATGTAAGGCTGTCAG 518369 28 100.0 32 ............................ GCAAGTACAGCCGAAACCAGCAGCAGCAGAAC 518309 28 100.0 32 ............................ TATCGGCAGTGGGGCGGGCTTGACACAGTTAC 518249 28 100.0 32 ............................ CCGAGCGGTCTAACTTGCTCAAGCGTGGTAAT 518189 28 100.0 32 ............................ TAGACTCAGCAGAAAACCCACTGCAAAACATG 518129 28 100.0 32 ............................ ATTCAAAATCACATAAGGAAAGGTAAGTGCGA 518069 28 100.0 32 ............................ GCTAACAGATGGCAGCGATGTTTTGAACTTCT 518009 28 100.0 32 ............................ GTCAGCATCAATAACTGCGCTTTCGTAATTAC 517949 28 100.0 32 ............................ ATAATTGATAGCAGACACGAGCCGTTCAGTAT 517889 28 100.0 32 ............................ CATAGCAGATACCGCAGACGCAGGCACTACAG 517829 28 100.0 32 ............................ TTGCCCGCCCATCACTGGCGCGTGCATATTGA 517769 28 100.0 32 ............................ TTTACTGATTAATACGCTAGAGAAATGCTTTA 517709 28 100.0 32 ............................ GAAGAAGATTTAATGAAATCTTGGGTTAACTG 517649 28 100.0 32 ............................ TTGCAGGACTTACCGTGGCGTTATTAGCCCAA 517589 28 100.0 32 ............................ GAATTGGTCAAGCGTGATGGGTAGCGGCGGCA 517529 28 100.0 32 ............................ GCCAACGTCTTTTACGGCATCTTGTACGCCCA 517469 28 100.0 32 ............................ CTTTTTTTGGTCATGTTGTGCGCCCACTTCGA 517409 28 100.0 32 ............................ AGTCACGATGAGCGTGTACGCCATGAACATAA 517349 28 100.0 32 ............................ AAGACAGGTTTAATGCCACTACTAACGCCACA 517289 28 100.0 32 ............................ AGTCCATTGCCTGATAGATCATTAAAGTAATA 517229 28 100.0 32 ............................ CGACAACGCCAAAGCGCACGATGTCGGGCGTT 517169 28 100.0 32 ............................ ATGGTAATGACGCAGATTTCGAGGAGTTGAAA 517109 28 100.0 32 ............................ GTGCAAAATTTACAGGTCATTAAAGAGCTTGC 517049 28 100.0 32 ............................ TTCTCGAACAATAGCCACATGGTCAGCAACCA 516989 28 100.0 32 ............................ TGTACCGCGGCAGACTCGGTTAAGTTAAACGC 516929 28 100.0 32 ............................ CTGTCTCATCTTTTAGCTTGCCTGCGCCGTCA 516869 28 100.0 32 ............................ AATAACCATGAAAACCTTGGCAAGTTTCCATG 516809 28 100.0 32 ............................ TATTAGGTAAAATCACCATATAGGTATAAATT 516749 28 100.0 32 ............................ CCCACGTATTAAAGCGGATAACGTCTTGCACT 516689 28 100.0 32 ............................ CCACAAGCATAATAGACGCAATCGGGCGGCTT 516629 28 100.0 32 ............................ AATCAAGGGAAGTTAAAGCAATGCCAGTTATT 516569 28 100.0 32 ............................ GTGATGGTAATGACGCAGATTTCGAGGAGTTG 516509 28 100.0 32 ............................ GCCTGACAAATCCATAAACTCAGTAAACTTCT 516449 28 100.0 32 ............................ AGCATGACGATGCTTTTCAAGACTTTTAACCC 516389 28 100.0 32 ............................ AATCTATAAAATCACAAACCTTTGAAGCCCAG 516329 28 100.0 32 ............................ CCGAACATCAGCACCAACGCCAGTTACTTTAT 516269 28 100.0 32 ............................ GCAAAATCTCACGAACAGCCCATTGACCCTTA 516209 28 100.0 32 ............................ AACAAGTGCTGATATGCTTGCTATTACTGGCT 516149 28 100.0 32 ............................ AAACAACTTGACTAGTTTGAAGTAAGCTAACA 516089 28 100.0 32 ............................ ATTGCGTTACAACTCGTCAAGACCGCGCACCC 516029 28 100.0 32 ............................ CAGTTGATATCTGGGCGTAATTCTTCTGCGGT 515969 28 100.0 32 ............................ GCCAACGTCTTTTACAGCTTCACCAACCCCGA 515909 28 100.0 32 ............................ AGAAGAAGAACCTATGAAACCAGTTAAAAATG 515849 28 100.0 32 ............................ AACAACTGCATCGCCAACTTTATCAACACTAT 515789 28 100.0 32 ............................ TAAAGCGCATTTGCAGAATCTTGTTCAAGACA 515729 28 100.0 32 ............................ TATACCAGGGCTGAAAATGCTTTTTCGTTTTA 515669 28 100.0 32 ............................ ACTCAAAACCGCCATCAGAATCTGGTGGAAAA 515609 28 100.0 32 ............................ ATCAACGGTGCCGAAAACTTTGCCACCACCAT 515549 28 100.0 32 ............................ ATCTAGCCAACTTTACCCCATGTCAATTAAAT 515489 28 100.0 32 ............................ AGTCTTGAATTTCTTGAGAACGCTCTAAACGG 515429 28 100.0 32 ............................ TTGTACCAACAGTGGCTAATGTGGATTAACTA 515369 28 100.0 32 ............................ ATCATACAACTAAGCGTCCTTGCTTCCTGTGG 515309 28 100.0 32 ............................ CAAATCCAAAAAGTTTGAAACCACTTGTTATT 515249 28 100.0 32 ............................ CCCCTGTTCCTGCTGTCCCTAACGATGGGGCG 515189 28 100.0 32 ............................ TTAAACGTGGCTTTAATAACGCCAATTTATCA 515129 28 100.0 32 ............................ GATGTCCCCGCTTTGTGATTTTTTATCTACGT 515069 28 100.0 32 ............................ TCATAAGCAGTAGGTAAGATTTTTCGAGTATT 515009 28 100.0 32 ............................ TGTTTTAGATTATCTCGCTAATGTGCAAGCTG 514949 28 100.0 32 ............................ AATAGCATCAATTATATCAGTAGGGTCAAACG 514889 28 100.0 32 ............................ AGCGATTGCACCGCCCACGATACCTTTTGCGA 514829 28 100.0 32 ............................ AGTCGCTCCGTTTTTGTTCGCTACAATGAGAA 514769 28 100.0 32 ............................ TTGATGAAAAGACGCTCGCTCTGGTCGAACGC 514709 28 100.0 32 ............................ CAAACCAGTTAACACAACAGTTAGAGCCGCAG 514649 28 100.0 32 ............................ TAGCATTTTTGCTAGTTCTTTTTGGTCGCCTG 514589 28 100.0 32 ............................ ACTAATCATGATTAATACAGTGCCATTTTGAC 514529 28 100.0 32 ............................ AAATGCGCTATCCCTGCCATATCACCGAGAAA 514469 28 100.0 32 ............................ CATTCAAAGATGGTAAGCCAAAAGTATTTTAT 514409 28 100.0 32 ............................ TGCGCCAGACGATTGGCACGACTTACCAAATA 514349 28 100.0 32 ............................ GCAAAGATTGACATTCGGATTTTCGCTAAGTT 514289 28 100.0 32 ............................ AACAGGCGCAGTATTTGAACGATTGAATTTCA 514229 28 100.0 32 ............................ TATCAATCGCTGAATTTTGCCAGTCTGTAGTG 514169 28 100.0 32 ............................ AAAATCGACGATAGCAAACACACGCTTGCGTC 514109 28 100.0 32 ............................ TAAAATGGGGCAAAAATACGCAAATACGATGG 514049 28 100.0 32 ............................ TTTAGCCGCCTTGTAGCGCGTTAAAATCGCAT 513989 28 100.0 32 ............................ TAAAATCATTGACATGGCTATATCAATGCCAG 513929 28 100.0 32 ............................ AAGTTGGCGCAACGGTACACACGGCAAACCAT 513869 28 100.0 32 ............................ AAGATCATCTTGTTTATCAAACCAATAAATAT 513809 28 100.0 32 ............................ ATCATGAAAATGCACCTATTTAAATCCAATGA 513749 28 100.0 33 ............................ GGCAGAGAAGACTATGAAGGGTTTGACCCATCC 513688 28 100.0 32 ............................ AATTAGATATCATCGCCAAGCATCAAATGGAA 513628 28 100.0 32 ............................ ACCATGCCCATGCGATGTTTGCAAAAACTATC 513568 28 100.0 33 ............................ AATAAAGTCCGTGGTTTTGACTTCTTTTAGCCC 513507 28 100.0 32 ............................ AATGCCAACAAAAACAGGACACCCATCATGAA 513447 28 100.0 32 ............................ AGCAACAGCGGCTAAAAGAGCAGGCATTTATA 513387 28 100.0 32 ............................ TTTTCCATGACCGTTAGCGGCAGTAACTAAAA 513327 28 100.0 32 ............................ AGCAGTAACAAGGGTAAAACCGATACTTGCAA 513267 28 100.0 32 ............................ TTCTGGTGGTGGGTGTTCTGGGTCGTCTTGTT 513207 28 100.0 32 ............................ TGAATATGAAAAGTTGTTTCAACAATATGCGA 513147 28 100.0 32 ............................ AACCTTGGATGAAATGCGCTCAATCTTGTTTC 513087 28 100.0 32 ............................ ACCAAATAGCGCTCAGCGATATCTGGGTAATC 513027 28 100.0 33 ............................ CTGCCCCGCCACCTCAAGCGGATTTACACGATG 512966 28 100.0 32 ............................ ACAAACGATCCGTAATGCTAAAAAATATGTGT 512906 28 100.0 32 ............................ ATTATTATCTGATGGTGAAAAAGGCTGTTGAA 512846 28 100.0 32 ............................ ACCAGCACGGAAGCGGTCAGTTTCCTTAACAT 512786 28 100.0 32 ............................ AAGATCATCTTGTTTATCAAACCAATAAATAT 512726 28 100.0 32 ............................ ATCATGAAAATGCACCTATTTAAATCCAATGA 512666 28 100.0 33 ............................ GGCAGAGAAGACTATGAAGGGTTTGACCCATCC 512605 28 100.0 32 ............................ AATTAGATATCATCGCCAAGCATCAAATGGAA 512545 28 100.0 32 ............................ ACCATGCCCATGCGATGTTTGCAAAAACTATC 512485 28 100.0 33 ............................ AATAAAGTCCGTGGTTTTGACTTCTTTTAGCCC 512424 28 100.0 32 ............................ AATGCCAACAAAAACAGGACACCCATCATGAA 512364 28 100.0 32 ............................ AGCAACAGCGGCTAAAAGAGCAGGCATTTATA 512304 28 100.0 32 ............................ TTTTCCATGACCGTTAGCGGCAGTAACTAAAA 512244 28 100.0 32 ............................ AGCAGTAACAAGGGTAAAACCGATACTTGCAA 512184 28 100.0 32 ............................ TTCTGGTGGTGGGTGTTCTGGGTCGTCTTGTT 512124 28 100.0 32 ............................ TGAATATGAAAAGTTGTTTCAACAATATGCGA 512064 28 100.0 32 ............................ GACAACCTTGCCGCCAACGTCTTTTACCGCAT 512004 28 100.0 32 ............................ GCCAACGTCTTTTACAGCATCACCGACCCCGA 511944 28 100.0 32 ............................ TGTCGACATTCAAACGCCAGAACTACCGCAAA 511884 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 177 28 100.0 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCGCTGGGCAAAGGTATTATATAAAAGCTTGGCGGAAGGCTGTGGCTTTAAATTTACCCGCGAGGAAGGCAAAAATGCCAATGATGATATCGCCGATATCGCCAATAGCTACCTTGACCACGGGAATTATATCGCTTATGGCTATGCGGCAGTTGCATTACATGGGTTAGGTATTAGCTTTGCTCTACCGATGCTACATGGTAAAACCCGCCGTGGTGGTTTGGTGTTTGATGTAGCAGATTTGGTCAAAGATGCGATGGTGATGCCACAAGCATTTATTTCGGCAAAACTGGGGCATAATCAAAAAGAGTTTCGGATGCAACTTATCGAGATTTGCCAAGACCAAGATGTGTTGGATTATATGTTTGGCTTCGTTGTAGACACTTGCCAAAAAATTAAATAAAATCAGATGCTTATAAAAAGCACTTTAAAACGAAGTGTCTTAACTGAATTAAAACGTATATAATTGATATCTGGGGATTTTGTCAGAAAATTCTCCA # Right flank : CATGAGCTTGATTGATATTGTTCATGCACCCTACTAAATTTTTCTAGTATATATCTACTTTGCATTTTTTTCGTCAATATTTCTCATTTTTATACGAGATAGTCCTAATCTAAAGTTAAGGTAAGCAATTTAATATATTGAATTTTTGCTTATGTATTATTTTATTAGTATGTGGATTTAGAGTCGTACCGTGAAAACTCAAAACTTTATATAGTCCGTATAACAACTTTTGTATCTATTTTTCCAATCTCAAGACGGTTAACTAAACTAGTGTGTCAATGTCTTAAAGTTTCTAATAGCCATGTTTTTAATTTGGAGGGAATAACTTTGAAAGGATTTTTTTTAGGGCATGAAGGTTTTTTAAAATGAGTGATTAAAGTTGAAAGAAATAAATCCAGTTTCATCTCTTTTAAATTCGGGTGGGGGTCAAAATCTACTTGCCCAAAAATTAACCAAGGCACAATTTGGGCACAAAATGGGCACACAAGATTTCTAAGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 549994-544502 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPY01000001.1 Moraxella osloensis strain NCTC10465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 549993 28 100.0 32 ............................ GTGTACCGTCTTGATTACTCTGACGGCGAATA 549933 28 100.0 32 ............................ GTTAGCAAAAGTTTGAGTGATAATCCCGTCTA 549873 28 100.0 32 ............................ ATTTTCGTCAGGCTTTATGCGTCTAACGTCTA 549813 28 100.0 32 ............................ TAAATAATCGGTTTTATAGTTACCTTCAACAG 549753 28 100.0 32 ............................ ACGAATTACAGCTATACAATGCGTTTTGTCAT 549693 28 100.0 32 ............................ TGATATCGAAGGTACGCCAGTTCCCACGGATA 549633 28 100.0 32 ............................ AGTATCATCAGCGACCCAAGCTATGAAGATGA 549573 28 100.0 32 ............................ TTAAGAGATTAAAAAGCATAAAAATAAAAGCA 549513 28 100.0 32 ............................ TAGGATTTTTGGTATTACCCCTAAACGTGATT 549453 28 100.0 32 ............................ TGCAAAAACAGCGCGAGGTCTTATATACCAAC 549393 28 100.0 32 ............................ ACTTGTGTTGTCGACCGCAAAAATCATGCTGT 549333 28 100.0 32 ............................ TGTAGCGGTTTAAATCGGCTGTTAGCTTGATA 549273 28 100.0 32 ............................ TGCATATTTTGTCGCATCGCCAACGGCTGTTA 549213 28 100.0 32 ............................ ATCGCTTAGACTGCAAGCCAAGTAGTTCGAAG 549153 28 100.0 32 ............................ TAAAACAGTGATTGCGCCCAATACTGCGCCAG 549093 28 100.0 32 ............................ ATTGACAGCGTTATACTCCAATGCCGTGCTAA 549033 28 100.0 32 ............................ CTTTTAATTTGCGGTTAAGGTCATGAGTGACT 548973 28 100.0 32 ............................ TAAGCTAACTACACACAGGAGCGTTATCATGC 548913 28 100.0 32 ............................ TGTTTCTGCAATCTCTTTAGAATTAGCCTGTT 548853 28 100.0 32 ............................ TCAAGTGTGCTGGCGTCACCACTTTTTCTGTC 548793 28 100.0 32 ............................ ACAGGTACAGCTTACCGCTTTGTATCCGATAT 548733 28 100.0 33 ............................ ACGCTAGGTGTTTGCTCACTGGTAAGCTGTCCA 548672 28 100.0 32 ............................ TTTTTTGTTGTCTGAAATTTAAGGATTGAACA 548612 28 100.0 32 ............................ AGTCTTTACCCCAGTTAAAGCGTAGCGGTGCA 548552 28 100.0 32 ............................ GCCATCACAGGCGGTTTTTTTATGGGCTAAAA 548492 28 100.0 32 ............................ TGCATTTCAATGAGCCTATAATCATAGTCTAG 548432 28 100.0 32 ............................ CATCAATATTCACCGATACTCATCAATACTCA 548372 28 96.4 32 C........................... ACGAAGCGAATACCACGGCTTGTTTATCGAAA 548312 28 96.4 33 C........................... TTGTGCGCTTTGTCTTTGCTAAACTCCCAAACT 548251 28 96.4 32 C........................... CAATCGGGTGCGCCTTTGAATACGTCTTGTGT 548191 28 96.4 32 C........................... GTAGTGGCTGGGTTCGTGATAAGCACAGTCCG 548131 28 96.4 32 C........................... GATACGAGTCGTTGGCAGTAAGTCATAAGTAA 548071 28 96.4 32 C........................... ACGTTTGGGGCTGGACTTATCGAGAGATATCA 548011 28 96.4 32 C........................... GAAAAGGTCATGATTGACGCAGGTGGTTGGCG 547951 28 96.4 32 C........................... ATCATGCACCTGCGCTATGCTAGACAGTCTTT 547891 28 96.4 32 C........................... AAAGGCTTGGTGAGTGGTTTAATTCATCACAC 547831 28 96.4 32 C........................... AGCATGACGAGACCAGATGCCACATTCCTTGA 547771 28 96.4 32 C........................... ATCAAGTTTTATTGAAGCTGCTTGTAACTGAC 547711 28 96.4 32 C........................... ACAGTCAAACCGCGTTGAGCATAAACATTTTG 547651 28 96.4 32 C........................... TTTTTCGCCTTGCTCATAGATAAATGTTTTTT 547591 28 96.4 33 C........................... AGGCATAAAAAACCCTGTTAGCGTGAACTAACA 547530 28 96.4 32 C........................... ATGCGCCCACTTAATGCTTTATTCTCATCCGC 547470 28 96.4 32 C........................... ATAAAAGGGCTGTCACCTTTGCCTGTACCACT 547410 28 96.4 32 C........................... AAATCGGGGGAAGGCATGAATACTGGCTTTCA 547350 28 96.4 32 C........................... GTTTCGGGAGAAAACAAATCTTCCCGATAATA 547290 28 96.4 32 C........................... ACAATGAAGTATGTTATTCGTGTGCTTGAGCG 547230 28 96.4 32 C........................... ATCAGGCTTTACAATCACAATAATTTCCAGCT 547170 28 96.4 32 C........................... TTCCCCCGATTTGGGGACACGAATAAAATCTA 547110 28 96.4 32 C........................... TATAACAAATAGCTGCCTAATAAGTTTTGTAA 547050 28 100.0 32 ............................ GATATCACCGTCCCACTGTGCGCCACTGACAA 546990 28 100.0 32 ............................ ATTTGCGTTGCAGGGTCTTGGATAATTGACAA 546930 28 100.0 32 ............................ GACAAAGTTATGACGCTGACAGTATGGCAGAG 546870 28 100.0 32 ............................ TATAACAAATAGCTGCCTAATAAGTTTTGTAA 546810 28 100.0 32 ............................ GATATCACCGTCCCACTGTGCGCCACTGACAA 546750 28 100.0 32 ............................ AAAGGCTGGTCGATGAATGGTACGCGCTGCCA 546690 28 100.0 32 ............................ AAGATACCGCAGACAGTCTAAACGCACTTATA 546630 28 100.0 32 ............................ AGTCTGCTCAACCTTACTATCAACCTTCTGCT 546570 28 100.0 32 ............................ AAGCATCGCATTTTATGTTGTCGTGAAGTGCA 546510 28 100.0 32 ............................ AATATCACCGTCCCACTGTGCGCCTGATACAA 546450 28 100.0 32 ............................ ACTTTAGTTGTGGTGCAGCATCCGCAGTTGCC 546390 28 100.0 32 ............................ ATTGCGCTTGATAGTTTTAATACCTACAACTT 546330 28 100.0 32 ............................ ACCGTCAAAAAACAGCAAAGGTGAGCTACCTA 546270 28 100.0 32 ............................ AAAGCGTAAACCAAAACGCTCGATACTTGCGG 546210 28 100.0 32 ............................ TTAGCGAGTTTCTCATAATGCACAGTATCGAA 546150 28 100.0 32 ............................ GCATTAAACACCGCGCAGAACGTGGTGCAAAA 546090 28 100.0 32 ............................ TAGCACTTTGTTTGTGCAGACAGTGGACGGCA 546030 28 100.0 32 ............................ GCCAAGTCTAAATGCTTGTAGTGCCAATTCTT 545970 28 100.0 32 ............................ AGTCATTGATGAATTGTCGAAATCCGACACCG 545910 28 100.0 32 ............................ TGTACCTGTGCCGCCAATAAAAATCACGTTTG 545850 28 100.0 32 ............................ AACAAATATCCACGCCTTCAAACGATTTGATA 545790 28 100.0 32 ............................ CTTAAATTCGCAAACAGCAAGAGGAGCCCAAC 545730 28 100.0 32 ............................ TAGTTTTTGAGGCTAGGCTATCATTGCAAAAT 545670 28 100.0 32 ............................ TAGACTGTGGGGTTTTTCTTGCGCTTTGAGTT 545610 28 100.0 32 ............................ TATAGTGACGCTACCATCCGCATTAACTATAT 545550 28 100.0 32 ............................ TTCAACATCATCGTCATCTATATTAAATAACT 545490 28 100.0 32 ............................ ACGCCTATTGCAAAGTTGTCGTACTCGGTCAC 545430 28 100.0 32 ............................ TAAAAACTCCTCAATCTGCTCAATCTGCATAT 545370 28 96.4 32 .............C.............. ATTATCTGTAGTGCTAGAGTGGTCTTACCTAA 545310 28 96.4 32 .............C.............. TAAGCGTTGGGATGGTAACGCATGGGTTGAAG 545250 28 96.4 32 .............C.............. TTGCCCCAGCGCATGTGTCGTTTGCCGAAATG 545190 28 100.0 32 ............................ GTTGGGTGAATGATGGATATAATCTGATAGCG 545130 28 100.0 32 ............................ GCTCGCTATCTCGCAAATAACTGGCATTGCTT 545070 28 100.0 32 ............................ GACAGCAAAAACAGCCAAGGCAGTCACTTTAG 545010 28 100.0 32 ............................ GAGATTGAATTATCCAAAGCCGTAGAGCCACA 544950 28 100.0 32 ............................ ACCACGCAAAACACCGATGCTCACTGAGCCTT 544890 28 100.0 32 ............................ TTAACGCGCTCGGTCTTGCGATACCACAACTC 544830 28 100.0 33 ............................ TCATGGCTTGTTCAAGGTTCTATATCAATCTAT 544769 28 96.4 32 .............C.............. TTTTGATGAACCCAATGAGGACGGTAAAGTTA 544709 28 96.4 32 .............C.............. TTATAAAAATGGTTGAGATTGATACCGATTTT 544649 28 96.4 32 .............C.............. TATATGCAATATATCGTAAAATTTTAAACTCA 544589 28 96.4 32 .............C.............. TTACGAGTCTTTGCCAACCTCATTTACTGGCA 544529 28 75.0 0 C.........G........A..G..TCT | ========== ====== ====== ====== ============================ ================================= ================== 92 28 98.6 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : CGTTTGATAGATTATGTACATATCAAACGTATCCAGCCTGTACCCGAAGTGCATGGGCATGTGGTGGTGAGGCGTTACCGCTACAAGAATTTTGACAAAAAGGTGGCGGAGTTTGCCAACTTTAAGGGCATCAGTGACCAAGAAGCGTTGGCGCATTGTCTTGCCCATAAGCGTGCTATCAAACACTACCCTTTTATCACCCTAAAAAGTCAAACCACCCAAAATGACTATAAACTGTCAATTTGGCAAGAAGTGGCGAAGGATGAAAAAAGTGGCAACTTGAATACCTATGGGATGAATAATCAATCAGATGCGGTAACCGTTCCCCACTGGTAATCAACCTTGCCGACAGACTATAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATCAGTTATATCCAGGCAGAAAATGTAGGGTAAAAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCG # Right flank : TAATTAGTAAAACCGTAAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTGAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCGTTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTCAATTCTCGAAAAACCACGTAAACACTTGATATCACTGCAATAAAAAAGCCCCAATCAATCGATTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAAGTCGCTAGACCAATCTACCCTATTTGATATTAATGTACTTTAATACTCAAAGCTTTGATACGAGTGGGTTTAACTAAGCTTACAAGAATAACATTAATGTGATTTAATGACAATTAAGAAAATTATCTTGCAGTTTGGTCACGCAATATTGCGTGTTTTTAACCCCCACTCTTCTGATGTTTTTGATGGATAAAGCTCAAATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //