Array 1 20459-19502 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZDT01000009.1 Staphylococcus agnetis strain SNUC 4805 contig009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20458 36 100.0 30 .................................... ATGATGAAGATAACAAAATTGAATTAACGC 20392 36 100.0 30 .................................... TAACGTTTCTGTACCAACCTATGCCCGATG 20326 36 100.0 30 .................................... CTTTTTTTGCTTTTAATTGCGCAGGTGCGC 20260 36 100.0 30 .................................... ACAATGTACGTGGTATGCGTATGGTATACG 20194 36 100.0 30 .................................... TATTTTAAAGCTTTCTTTTGATATACTTCG 20128 36 100.0 30 .................................... TCTGGTGGAGATGTTGAAAAATCAGGAATT 20062 36 100.0 30 .................................... CCCGCCCGGTTCAGGTAAATCACTAGGAGT 19996 36 100.0 29 .................................... CAAATGATTCAATATTATAAAGAATCAAA 19931 36 100.0 30 .................................... ATATTCTTGTTTAAAGGGTTGGATAATCCA 19865 36 100.0 30 .................................... ATCCACCGACAATGATGTCGCATTTCCCTC 19799 36 100.0 30 .................................... TAACGATGACCGCACTATGACACTGATTTA 19733 36 100.0 30 .................................... GGACAATAAACCTGAGCCACTAACAGCACT 19667 36 100.0 29 .................................... TAGAATTGCACGTTTGGAAGAGAATGATG 19602 36 100.0 29 .................................... CCAAAAGAATCGGCGTTGTGGCGCAGAAA 19537 36 77.8 0 T........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.5 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTGGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGATCACATCTAATCCTTTACAATCTTATTATACGACAAAGGTCAAAAATAGTCAAGGTCAAAGTATTGTGGTGGATGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : TGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCTATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGTATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTGCCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGATAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //