Array 1 1058400-1057312 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007141.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472 strain DSM 11164 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1058399 30 100.0 45 .............................. GCAACATGCAATTTAGATCGTAGTTCTTTTTTCTTGCAAGTTCTT 1058324 30 100.0 46 .............................. AACATGCTATTCGCCTCCTTTCACCAACACACTCTGTCAAATTCCC 1058248 30 100.0 40 .............................. ATCCAATCCTGAATCTCTCGTACTCTCATCATACCTCCGC 1058178 30 100.0 37 .............................. ATCAGTATGAACTATGTTTTCAACCGTGCATTTAAAA 1058111 30 100.0 44 .............................. AAGTTCATGCCGAGTTTGGCGAACAACATGGCGATTTCAAACGC 1058037 30 100.0 36 .............................. TCATGGCACAAAACAACGTCATAATAGGACTCGGGA 1057971 30 100.0 38 .............................. TGAAGAAATACCCAAAGAACCGCGTTCGCTGTGAAAAT 1057903 30 100.0 38 .............................. CAGTCTTTCAATCTCCTTAAGTAACTGCGCCTTCTCGT 1057835 30 100.0 42 .............................. CCTTCTTCACTATCCCATAGTACACGCCATAAGGAAAAAGGA 1057763 30 100.0 38 .............................. CAGTCTTTCAATCTCCTTAAGTAACTGCGCCTTCTCGT 1057695 30 100.0 36 .............................. TGAGCGTTTCCGCTCACGCCTTTAGATCTTCAAGAT 1057629 30 100.0 46 .............................. AACATGCTATTCGCCTCCTTTCACCAACACACTCTGTCAAATTCCC 1057553 30 100.0 40 .............................. TCGGGATCAAGACACTTTGAGCTCACGAAACAATTTAAGA 1057483 30 100.0 38 .............................. TTCCAGTGCTTCTTCTCTTTGCTATTGCAGGAACCAAA 1057415 30 100.0 45 .............................. TGCCGTCAAGATTGTAATGGCTTCTGTTTCTTTGAATCGGGCCGG 1057340 29 76.7 0 ....G......-.T...A.T..C......T | ========== ====== ====== ====== ============================== ============================================== ================== 16 30 98.5 41 GTTTAGAAGGCTCCTATGAGGGATGGAAAC # Left flank : ATTTTCGATCAGAAAAGGTTGAAAGCACTGTCATTGGCACTCCAATCGAGAAATTCTTCTCTGTTGATACACGGATTCGATTTTCCGAACGAAAAACAGGTGGAATACATCAAAGAATGCGCCAGAAAACTCCTTAAAGATCTCGAGATCAGGGCAGAACTTCGCTTGGATCCAAGCATCGACATGTGCTTCGAGAAAGCAGGGCTCGACCTTTTTAAATGGTGATTGCTATTTCTTGATCACTGTTACTAAAACTTTTCAGTGGTCTTTGACAATTAAATCTGATGTTTACCCATTTCCAAAAGCTTCATCTGAAGCCTATTCTAAAAACAGGTATTGTAACGTTCATATGAACCACCCACTTGTGCCTCAAAAAATGAGAGACTCAGTAGAAGTGCCATTTTCGAAAAGCTTCAACAGAAGGGCACTTCCAAAAAGGTCGAATGTAACATCGTCTCGACTCAAAAAGTGCCGTCTTAATAATAAAGCCACTTCCACGG # Right flank : GGACGTCCGTGTCGGAACTAATCCACACGTTCTGGTAAGTCAAGCCACGGTGAAGCAAAATGCTCGATCTCTTTTAGGGTATTAAGAAAAGATCAATTCTCTATCCAAGCCCCAACGATGTGCGCACCATGGAACGCTTTGAATGATCGATGATAATGTATGCCATATGGTCTGGTTGTTTTAGAATAAAATTGGGAGCTAAGGAATGAAGAAGATCTTCTTTTCGTTTGTTGCGCTGTTGCTGTTGCTGATGCTTTTTTCCTGCGATCCGAAGATCGCGGAGGAGGGAAAGAAACATCTCGATGTGACATCGTACCGTTTCGAGCAACTGGACGGTCTGAAGATCGCCTACCGAGAGTTTTCGGATCCATCGAAACCCACATTGGTGTTGATACATGGCTTTATGGGCAACACGACGAATTTCGAAAAGTTGTTTCCACACCTTGCTGAAAACTTTCATCTGCTGGTTGTCGATCTTCCCGGTTTTGGTCTGAGCGACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAAGGCTCCTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1073605-1072791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007141.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472 strain DSM 11164 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1073604 30 100.0 38 .............................. GAGTGTTTGAACGGCGTTTTCGACACGCACAACTGGCA 1073536 30 100.0 44 .............................. CAGATTTGCAGAGTCGAACACATAGTCTTTTGAAATAATCGAAG 1073462 30 100.0 46 .............................. ATCTCGGTGTTGAAAAACATAGCTATCAGCCAGCTGAAATATTCCT 1073386 30 100.0 34 .............................. TCTATCGGGTCAATGAAATACGCCAATGGTACCA 1073322 30 100.0 38 .............................. AAACGGGTGAGCGTTTCGCTCACCCGTCCATACTCCAT 1073254 30 100.0 44 .............................. AAAGCTCGTCTATCTTATCCCACTTCGATTCTCTTCCAGCCACA 1073180 30 100.0 42 .............................. GTTCAGTTTCAACGTCGAGCAAGTGCCAGCCGAAAAAGCGGC 1073108 30 100.0 42 .............................. ACCTTCTGTGCCTCCTTTGTCTAATACGCATACAATGTTACG 1073036 30 100.0 42 .............................. GTTCAGTTTCAACGTCGAGCAAGTGCCAGCCGAAAAAGCGGC 1072964 30 100.0 42 .............................. ACCTTCTGTGCCTCCTTTGTCTAATACGCATACAATGTTACG 1072892 30 100.0 42 .............................. TTATTTTCTGCGGGTCTGTTGTATGAGCCATTGCCGTTGCCG 1072820 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 12 30 100.0 41 GTTTAGAGAGGTCCTATGAGGGATGGAAAC # Left flank : GAGGAGATACACGAGAAAATCGTTCTATTCGAGATGATAGTCTTGTCAATCACCAAAGCGGACAAGATCACTCAAAAGATTTTCGATAGGACAAGGCTGGGGAACTTAGCACCCGTGCCAGTCAAAAAGCTCTTCTGTCTTGATACATGGATTCAGTCCCCGAAAAGAGGGATAAAATACATTTGAGAAGAGTGCAGAGAAATAGCAGGGATGTCAAAATGTTGTGACGTCTTAATGATCGTTATTACCTTTATTTTAACTTGATCTTTGACAACTAAATCTGTGATTTACCAAATTCTGAACAGTTCTTTTAGAGCCTGCTTTAGAATATGTGATTGTAACTTTCGTGTGAACTCATCCTTTTCCTGTCTCACAGAGGGGGGATCCCCAAAACATGCCTTTTCGAAAGTTCTCATTACAAGGGTCCTTCTCGAAACGTCCAATGTAACATCGTCCTTTGCAACAAACTGCTTTGTCAGTAATAGAGCCACTTCTACGGG # Right flank : GAGCACACAGAAAGTTTCCTTCCGAAGATTCGGAAAAAGTTCAGAGAAGTCCTATGGGGACCCAACTGCATCGGTCCGAATGGAGATCTTTCCTGAAATGGATGGGACGTGGAAGGTGCCTCCGAGTTCAAACCGCGAATCTCTTCGACCTGAATGAAGTTTTTCTCGAGAGAATGAAAACTGATGATAGGGGCGGAAGTTGTCCAAATCGGATCCTTCCCTGAGGGATCGAGACCCGCCGGTCGGATCGAAGATCGTCGTCTCGCGGACAGAGGCTTTGAACGTTCTGTTTTCTGTGATGAGACTTCGATGCGAGAATTTGCAAAGAAGTGTTATAATTCTATTGAAGTACTGGGATGTGGGGGGACGTGATGGATAACTACCATCATTCTTTTTTTCTCGCGACTGATCCGTACGAGTACCTTCGATTCGTAAGAAGGAGGGTTTTGTCAAGAGAAAAGCTTTTGAAGGACTTCGAGCTCCTTCCCAAGGACCAGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAGAGGTCCTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1139909-1134832 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007141.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472 strain DSM 11164 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1139908 29 100.0 36 ............................. ATCCACGTCTCGGTTGCTGTGTCTACAACTTTCTTA 1139843 29 100.0 38 ............................. TAAGGAGAAAGGTTCAGAGCTAATCGGCTATCTAAACG 1139776 29 100.0 36 ............................. AAAAATCAACCACTCCGCTTCTTATTGCCGAAAAGA 1139711 29 100.0 37 ............................. AGCTCTCTCTTGTACGCAACCGCTACCGGCTCGTTTC 1139645 29 100.0 36 ............................. TCTCTTGTGTAGATTTCCTTCGCATTCAAAAATGTT 1139580 29 100.0 37 ............................. AAGCATATTACACAGTTCCGTATCTCCGCTGTATGCC 1139514 29 100.0 36 ............................. ATCTTGAAACTCCTCATACTTTCTCCCCCTCTCTAA 1139449 29 100.0 36 ............................. TTTCCGTTCAGCCACCTGTACAGTTCCTTAAACCCG 1139384 29 100.0 37 ............................. CACCCGAGAAAATACAAGCAAATATCGAGCAGATTAA 1139318 29 100.0 36 ............................. CAGCAACGTATGTGTTAATGAGTTCGCCGACGCTTG 1139253 29 100.0 36 ............................. TCGCGGATACGTTGTTCGTGTTCAGCCAAATAACAC 1139188 29 100.0 36 ............................. AATAGTTATCCCGTGGAAAGTATGCACTATGCACTA 1139123 29 100.0 36 ............................. ATTGCTCCTGCCGGAGACTTCGCTTCCGGATCCCAA 1139058 29 100.0 36 ............................. AAAATAAACTCAAAGCAACATGGCAGGAAGTGAAGG 1138993 29 100.0 37 ............................. CGGGCGAGGACACGTGGATTACACCGCCGCGGATAAG 1138927 29 100.0 36 ............................. GGAGCTAAAACTCCACCAACCCACTTGGCAGTTCCG 1138862 29 100.0 37 ............................. TTCCAGAATCGGTACCGTCTACGGCTGGGAATATACG 1138796 29 100.0 36 ............................. TGCCATTCCTTCTCATGCTACACAGATCCTTGAAAT 1138731 29 100.0 37 ............................. AACAAAAGAAAAGCCCGCTTTGATGCGGGCTTTGAAA 1138665 29 100.0 37 ............................. TTGTTCCTGTGCAGTAAAGATGCCTATTTTTACGAGA 1138599 29 100.0 36 ............................. TTGAGATGATTGCGAAAACATCTTCAAGCAACGGAA 1138534 29 100.0 36 ............................. CAGTTGAAAAGCTCGAGTCCACTCTCTATGGTGATC 1138469 29 100.0 36 ............................. ACTGCGCTGGAGAACGGGTTCCTTAGCTGTTGTCCA 1138404 29 100.0 37 ............................. CGATTTAGACGTGTTCGTGGAACGTGGTGGGGGAGAC 1138338 29 100.0 36 ............................. TGCCATTCCTTCTCATGCTACACAGATCCTTGAAAT 1138273 29 100.0 36 ............................. TCGGACTAACGCGCGTGCTCGAACAGTTTGCTAAAA 1138208 29 100.0 37 ............................. TAATGCTACACAGATCCTTGAAATAGACCCAAATACG 1138142 29 100.0 37 ............................. AAGGCCTAACGATCACTCCCGACGACGGAACTGCGGG 1138076 29 100.0 37 ............................. AGGACTTTCCTTTGCTTCAGGACGTGTTCGCGATCAT 1138010 29 100.0 37 ............................. TCCAACGTTTCTAAAGAGACTTTCATGTTCCCCCTCC 1137944 29 100.0 37 ............................. GAGTTGACACAGAGGAATATAAGAAGCAGCTTGAATA 1137878 29 100.0 35 ............................. GGAAACATCTCGCTATCTAACTATTCCGCGAACAC 1137814 29 100.0 37 ............................. AGTTGAATAGAATCTCCCACGTAGATATCGGAGACGT 1137748 29 100.0 36 ............................. CGCACCGTGTGAGGATGTTGATTTTGTGTCGTTTCA 1137683 29 100.0 36 ............................. TGTGGTGGTGGAAAAAGAGAACCAGAAGCTGAATAT 1137618 29 100.0 37 ............................. ATTCTTCGCCAGGAAAGTCCTTTTTCTCTTAATTGAA 1137552 29 100.0 37 ............................. AGCTTACGAAATCACATTCCAGTTCGTTGCTCAAGAT 1137486 29 100.0 36 ............................. TCGGTAGTTGGCTCCTGTCGACAAGCTTCATTCTTG 1137421 29 100.0 36 ............................. TTCCTGAGGAAGACGCTCTCAGGGCCATAGATATTT 1137356 29 100.0 36 ............................. TTATGATATTCCGATTGAGCTTTGTAAGCGGTTTGA 1137291 29 100.0 36 ............................. TTTCGCAAGCGACAAGTTTTGAAGAGCTGGAGCAAA 1137226 29 100.0 36 ............................. GCGTACGCGAGCGAATGCGCATCGGAAGCGGAGCGA 1137161 29 100.0 38 ............................. CGGAATTCGACGGTGTTCATCATTTTGTACATATCTCG 1137094 29 100.0 35 ............................. AAGGTAGCAATGTTGACGAGCTTGAAAGAGAGGAA 1137030 29 100.0 37 ............................. CGAGGACGTTTATCTTGTGCTTTGCAGGATCGTATTC 1136964 29 100.0 36 ............................. CATATCTAACGAACCGAGCGAAGGCGAATTTCTCAT 1136899 29 100.0 38 ............................. TGGATACCACATCTCCAGCTCATTCAAAAACTCTTCAA 1136832 29 100.0 38 ............................. TAGTTTTGTTTTGGCATGCCTATCCCTCCGTCCAAATA 1136765 29 100.0 37 ............................. CGTTCACAAAGCCTTCATTGTGCTTTTGCTCGTACTC 1136699 29 100.0 37 ............................. TCGGATCAGTTGACCTCGTATCTCAAAACGCTATCGG 1136633 29 100.0 36 ............................. TTGTATCCGTTGTTGCCCGAACGTGTGCCGGTTCTC 1136568 29 100.0 36 ............................. ACGATTGGTCGAGATAATGAAAGAACGAGGGTTCCA 1136503 29 100.0 37 ............................. GAGAGAACGTGTAGTCGTGAGGAAAGGAAGTGATAGC 1136437 29 100.0 36 ............................. TTTTCACCGCAGATTCAAATATTTAAGTGCAAAGGA 1136372 29 100.0 36 ............................. CTCTTAAGAGAGTAGAAAAAGTAGAAAGGTTAGAAA 1136307 29 100.0 35 ............................. CAGGGTTAGTCTGGCGTATGACGATTTGCGACCTG 1136243 29 100.0 38 ............................. TCATGCCACATCTTTTGTGAAGACGAACGAAGCTACAA 1136176 29 100.0 36 ............................. CCATTTGGCGCAAGTACTCCACCATACCATTTACGA 1136111 29 100.0 35 ............................. AAGAATTCTTTCCAGAACTCAAGATCAGGATACTC 1136047 29 100.0 38 ............................. ACCTTACAATGATGGGCAAACTCCCACGCTCACTTCAA 1135980 29 100.0 36 ............................. TGATATCCGCGACACTGATAGAGGCGGTCACACGAC 1135915 29 100.0 38 ............................. TGCTTTCCCTCCTCACGAAATACTCCCAGCTTCTCACC 1135848 29 100.0 38 ............................. CGTTCTTCCATCTTCGTCGAGTTCGGTTCTTATCACTT 1135781 29 100.0 36 ............................. CCAAACCCTCTTTCACGAGTTACTTCACGCGGTGAT 1135716 29 100.0 36 ............................. TGTTTCCGAGGCGATGCTCTCGAATATCGCGGACGC 1135651 29 100.0 36 ............................. GCCGAGTTCAAATGAGCGCGTTTTCCTTCACGAAGA 1135586 29 100.0 36 ............................. ATAGGTTAGTGGGCACGTAAACGCTTCTTGTGGTTA 1135521 29 100.0 37 ............................. CTCTCACACCCGACAACGCACCTGAAGGGAGTGTGGT 1135455 29 100.0 36 ............................. TATCCTCGCAGTTCTTGCATACAACTGGGGAATCGG 1135390 29 100.0 36 ............................. TTGGGACTTCTTTTTGAAAGGCGATGTCTCAAAGCT 1135325 29 100.0 36 ............................. CCCTTTTAAGGGGGTGTGATGATGTCTTCGGGCATA 1135260 29 100.0 37 ............................. CTGTGACGAAGAAAACTTTAAAGCTGTGGTACACCTC 1135194 29 100.0 37 ............................. TAACACCGCTGGGACGTGTGAGTAGAGTGACAATCCA 1135128 29 100.0 39 ............................. CTCGCAAGAATTGATAGATTCGTGGTATAGAACGACTGA 1135060 29 100.0 38 ............................. CCGAGGATCGACTTTGTAATAACGCGAACACGATTCTC 1134993 29 100.0 37 ............................. CGGTTCCTATATTACGGGTATGTAAACTGGTATACAT 1134927 29 100.0 38 ............................. ATCAGTGGCACTTTGAATTACTTCGTAAAGCGGATGGG 1134860 29 93.1 0 T...G........................ | ========== ====== ====== ====== ============================= ======================================= ================== 78 29 99.9 37 GTTCAATCGAATCTATGAGGAATGGAAAC # Left flank : AATCTATCGCATTGGTATAACGACCAAACAGGATTCCAGAGAAGTTCATCCGTACTCATGTTCTGACTTATTGATTCTCAGGTGTGTGGTCATATTGAATTAATAGTGCTTTAACTTGGAATAGCAAAACCTACGATTCCTAATCGTAAATGCTCTTTACTGAAGCTCTTGACAGACGCAGTGTTAGATTATTAATCATTTGTGAAAGAGCAAAGTTAATTGGGGATGTAAGATGATAGTATTCATCTTTTGGTGTGGTTATCCGTTTATTTGTGAAATTTCACAATCATCCTGGACAAATGTTAACGAAAGGCTTGCAAGAGTGTTTTGAGACAAATGGACCTTCGATAGAGGGAAAAACTCAGGAGATTCCTACTGAAAGTCGACGCGATGTTTTATCAGGACTCGTGGACAAAATCGCAAAAATGATGGTTCTTCGAGCTAAGTCAAACCCAGCGTACCCCTTATTATGAAGATCCGTTATTATATAATATCTATGG # Right flank : TTGAGCGAGCCACCACAATCTTCATGTATCTCGCCAAGAACTCCGAGTATCAGAAGATCGGCCTTCACCCGAACCTTGAACGGTCCCTCCGCATTTTTCCTTATCACAACACTCCCGTTGAAGTCGATGTTTCCCGTATCGTAGCCAAGATCTTTGTCGATCACGAGCAGTTCTCTTATACACCTTCGAATCTTTCAGTACGGTTGACCATCGCAGTTGGCAAGGATCTGCATCCCATCTGGTGACAAGCGAAGGTTTTCTCCTATGAAACTCGCCAGGTTAACGTCTTTTGGTTCTTGAACCTTGACGAGTTCACCGGTCACTGTTAAACGATCTTCACCTTCGAAAGCTTTCCTCTTGATCGCAAGTACATCGCCCTTGTTACACGTGAATATCTTGTAGAGCGATGCGGGATCCACCGACTCGCCTTCCTGAGGTTTTTCCAGAACGAAACCGCTGGCTGGGAAGAGAAATTCGACGGATGCGTCTTTGGGTAGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAATCGAATCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 1233417-1235360 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007141.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472 strain DSM 11164 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1233417 29 100.0 36 ............................. TTCCCAAAGCGTAGTAGTTCAGCTCGCCTGAATTAG 1233482 29 100.0 37 ............................. CGTGAGGCGAGAAAGAGGTTTGGGCACAACATTGCTT 1233548 29 100.0 36 ............................. ACTTATGAAAAGAGGTGGGAAGATGATCTTGTCTAC 1233613 29 100.0 36 ............................. CAGGTTGAAGAACGTAGTACACGTCCGTTGTGTTGC 1233678 29 100.0 39 ............................. GAGTCAAGGGCGAAGGGAGAGAAAAGTCCACGTAACCAC 1233746 29 100.0 35 ............................. CCGTCCGTTCGGCTGGATTACAAGCACAGACACAA 1233810 29 100.0 37 ............................. CTGTCATGTCTATAGTCTTCCAAGGTACGTCAGAGAC 1233876 29 100.0 37 ............................. AAAATGATGTACTCAGATCCCGCAACAGGAGCCCAAG 1233942 29 100.0 36 ............................. TAATGGGATTGATCGTCAACGGGGTGGACTTAAAAA 1234007 29 100.0 37 ............................. AAACAGGTCAACATCTCTGTCAAGGTTGAAGAAGTGA 1234073 29 100.0 36 ............................. TTAGATCAAGTCATCGAGGGTGTGACAGGATACCAG 1234138 29 100.0 36 ............................. CTGTGTTCACTACTTGCTCTTTGGTCAACAGCTTTG 1234203 29 100.0 38 ............................. CTGGGAGTGCCCTTCCAGCTTACGAAAGGTGTATTAGG 1234270 29 100.0 37 ............................. AGCGCGGTGGCGACAATCACGGAAGAGACCGCGAACA 1234336 29 100.0 38 ............................. GTCCGTCCATCTATCAGGAGCGCGGTTCTTGAGGAAGA 1234403 29 100.0 35 ............................. CTATAAGCTCCGCTCGTACCGCCTGTAACCGAAGG 1234467 29 100.0 37 ............................. ACAGCCGGGCGAAATCATCGAAATACCCGTCGAAAAG 1234533 29 100.0 35 ............................. CTATAAGCTCCGCTCGTACCGCCTGTAACCGAAGG 1234597 29 100.0 37 ............................. ACAGCCGGGCGAAATCATCGAAATACCCGTCGAAAAG 1234663 29 100.0 39 ............................. CATAAAGAACGTTGACGGGCTCTTGCTGGTGGTAATTCA 1234731 29 100.0 39 ............................. CAATCTTTTCGATGATTCCATACTTTTGCTGTGCGGTTG 1234799 29 100.0 41 ............................. GCAGTGTGTATGTGCTTTTGATTGACAAGCGTGATTATAAG 1234869 29 100.0 38 ............................. CTTGGATACGTTTGTCTGAAACGCATCTTCAGATTCTT 1234936 29 100.0 38 ............................. CTTGGATACGTTTGTCTGAAACGCATCTTCAGATTCTT 1235003 29 100.0 37 ............................. ACTTTCAGAAAGTAATCTTCCGTTGCGTTTGTCAGGT 1235069 29 100.0 35 ............................. TTGAGTGTGTTTAGAACATGTTTATTGGTATCAGA 1235133 29 100.0 38 ............................. ACAGGCAAGAGCTAATTGCCAGCGCCAGACATGACCAT 1235200 29 100.0 36 ............................. TCGGTCTGATTTACAAAATCAAGGTACAGCCTTTTC 1235265 29 96.6 39 .........T................... TTGGCAACATAACGAGCCATCTGATCTTGTCTCAATCGC 1235333 28 93.1 0 ....................T....-... | ========== ====== ====== ====== ============================= ========================================= ================== 30 29 99.7 37 GTTTGATCTGAACTATGTGGGATGTGAAC # Left flank : CCTCTGAAGGCGTGGTGGTGATGCCTTATTACGTAATCACATACGATGTTTCGGAACAAAGAGTAAACAAAGTTAGAAAGATCTTGAAAAAGTACTTCGTATGGGTTCAAAATTCTGTTTTTGAGGGGGAAATTAGCTTGGGCAAGCTTGAGAAATGTAAGCAAGAGCTTTTGCAAGTCATAGATCAAAGGGAAGATTCAATATACATCTATAAAGTTCATCGTCTCACAGATCTCGACAAGCAAGTAATCGGCGTAGAAAAAGAATTTACCGACAACTTCTTGTGAGTTTGCAGTAAACCTCTTTACCTGTTGAAAGTATAAAGTTCATTGATCTCATCGAATCAAACCGATGTTTTTCACAATCATGGTTTTATGTAACTTGGGGTTCGCTGCAAAGACCTGAAAGAACGAAAGCCAAAATTTCTCGTCCGACAATATTGAAAATTTCTCTGAAAATCGATCTCCCTTTGCTCGGCTTTCTACTTATGAATTAAGAGG # Right flank : CCAGTCGCAGACGGACCAAGGCGTTGCCAAAACGCCTATAAGCGATTCGGCAACAGAAAGTGTTGCCGAAAAGCATGCTGACCAATCGGCAACTGTTGCCGAACAGCGTACTACACAAACGCTAACGTCTGGCACCCAACCAGCCGAAACCGATCAAGGTGTTGCCAAAAAGGATATATCCCAAACGGCAACACCAAGTGTTGCCAAAACGGAAACACCCCAGGGTGTAATACCCTTAGGTGAGACATTAACAGCGGAAGAAACCATAGAAATGGTAGATAGACTCTGCGATTTGAACACTACACCGACAACTATTCACGTTCTATGCGGATTCTCGTCAAATACAAAAACACAAAATTGATGTTCAGCGTGCGGAAATTGGCACTTGAACTGCATCATGATCATGCGGGGCTACAGAAATACCTTGGGGAATTGCACAAACACGTCGTCTTGACCGTGTTTTCGTCACCTCGAGGTACCATCATAGACTTCACGCCACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATCTGAACTATGTGGGATGTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //