Array 1 247372-248451 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMRS01000005.1 Nitrincola tapanii strain MEB193 NODE_5_length_269635_cov_95.402085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 247372 37 100.0 32 ..................................... GGTGGCGTATTGCCGCTGTGCTCCCCAGCTAA 247441 37 100.0 32 ..................................... TCTAGGGATAGGGTGTGGAAGTAGCCGCCTCG 247510 37 100.0 33 ..................................... GCGCCGCGATTTTCGACTGTATAGCCATAAATT 247580 37 100.0 33 ..................................... ATTTACCTATTCGACGTCTATCAGACACTTGCC 247650 37 100.0 33 ..................................... CTTCAATATTTTTATTATTATCGTAGCTGATTC 247720 37 100.0 31 ..................................... CTTTTGGCGCAGCATTTTCGCTCTGTTTTGC 247788 37 100.0 33 ..................................... GCAGCTTAGACAGCTGTTTGAAGGCCTCTGAAT 247858 37 100.0 32 ..................................... ATAGCAGATCCGAGCGCCTGCTGCACCGGCGC 247927 37 100.0 32 ..................................... CTGACTTTTACCCTGGCTTTTGTGACTTTTGC 247996 37 100.0 32 ..................................... CGCTACCTAACAATATTGCAGTTTGATGCATT 248065 37 100.0 32 ..................................... TCAGGTTGGTGTCCTGAACCTCTCCCTTCCAA 248134 37 100.0 34 ..................................... TAGCTGAAACAACGTTAGCCATTAATGACAACAA 248205 37 100.0 32 ..................................... CCCTTTCTATCGCGTCTCGCATGTTGGCTGCC 248274 37 100.0 33 ..................................... ACGCCGTTGCTAATCATGCCTGATGGACGAGAC 248344 37 100.0 34 ..................................... GTCTGGTGACACGCAGTCTGGATGATGAGGTAAT 248415 37 97.3 0 .............................G....... | ========== ====== ====== ====== ===================================== ================================== ================== 16 37 99.8 33 GTCCGAGAGCTACCCCGATACCGGAGGGGATTAAGAC # Left flank : CAAACAGATGAGCATACAGGCAATCAGGACGATGGGCAGGAGCTTTTTCACAAAGGCAAAAACGTGATAGCAGTGCGTGTCCCAATACTCCGCGAAGCATACTGCCCGGGTGTTCAGGCAGATTCAGCGTGGTTGATGGCCGCACATCGACTTTCAGACTTGTGATTGCAGGGTGAGGAAAATAGTAGTGCGGTTGAGTTTGTGTATCCATACAACATCGATCCTGATGTCCACTTCGGCCTTGAATCTACCGTTTCCATCAGGGTATGTAAATCAAGCCTTACTTTTCTGGCGTCATCGGCGTCTTAATATGGTTTCAGAGAGCCCGGCTATTGAATCTTCTTCAGAATACGGGGTAATCTACAGGTGCTCTCGGACTGGGAGGCAAACAATGCTCAAGGTTACATCTGGTCAAATATTAGACAACTTGTTGGTCAAAAAACAATCAGTAAAAAGTAGGTTTTATCTGCTTGATTTGGTTGAAAAAATATTTGGTTGGA # Right flank : CTTTGCAGCGGCCATGAATGCCTGGTGAATCCAGACCCCATGGATATATCGACTTGCTGGTGATTTCTGTAAAACTTGCTCCTCAGAGTTGCAGCCCACACAATGTCTTGGCACCTGAAACTAGGTTCTTAATGAGCCAGTAAGATCCACAGGACATTGCTGCCATGAATCCGATTACCTACATTTGCATTGCTTCCGAGTTCAACGTACCTGAGCTTGAAGCCTGCCTTGCTGTTCAGCCTTCGGATCTGGTGTTGATTGTCAGCAACTTTGAAAAAGCCTGCCAAGGTGCCCGGCGGCTTGCATCAACCGTAGAGAGAGCAATTCCCGGGATTAGGGTACATCGTCCAGATGAGCGCGAGCCTTTCGATGGCGAAGACATCCTCGCTGTTCAGCATTGGGTTAGAACCACCCTGATTCCCTATCTTGCGCAGCATATCTCCGCGAACAATCAACAGATTCTGAATTTTACCGGCGGTACTAAAGCTCTGAGCTTGGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAGAGCTACCCCGATACCGGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 259372-260101 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMRS01000005.1 Nitrincola tapanii strain MEB193 NODE_5_length_269635_cov_95.402085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 259372 37 100.0 32 ..................................... CTAAAGGTTCTCTCTATTTCTTTTCGTTTTAA 259441 37 100.0 32 ..................................... ATCAACTTTAAGTTGACACGTTTACTCTTAGT 259510 37 100.0 32 ..................................... TCCTTCACGTTGTCAAACCAGTAGGGGTTCTC 259579 37 100.0 34 ..................................... TCAGCGATCAGCTCATGGGCGAGCTGTACATCAG 259650 37 100.0 31 ..................................... CATTCTTAATATTCGTTGTTTCACTAATAGC 259718 37 100.0 33 ..................................... CACGGTCAGCGTATGCAAACATGACGATCTTGA 259788 37 100.0 33 ..................................... AGCGCCATACCGTTAGGCATGACCGCCATGTTA 259858 37 100.0 32 ..................................... CACACTCTTTCATTTCTTTGTTAGGTTTCGAT 259927 37 100.0 31 ..................................... GCCATCATCTGAGCGAATTGGTTGAACATTT 259995 37 100.0 33 ..................................... GGCCAGTGACTGTGTAGGTGCGGATCGGCGATC 260065 37 75.7 0 .........................CTTACAGGC... | ========== ====== ====== ====== ===================================== ================================== ================== 11 37 97.8 32 GTCCGAGAGCTACCCCGACACCGGAGGGGATTAAGAC # Left flank : AGCGGCGAGCGCAGGTGCCGTGCGTGTTTACCGGGCCAGCAAAACAACCAGTACAGTTGTTAATGCGGTTCGTTTGGCTGCGGCGTCATCATCATCTTCTCAGGCCGGCTTGCTTGTCTCTGCAGCAAGCGGTGGTGGGGCAGCGGGTGCAACGGCCGCTTTAACCGCTGGTGGATCAGTGGCAGGAGGCTCTGCTGCGACAGGACTTGTAGCGACGGGGTCAACCTTACTCGCAACACCGGCGGCTCCTATAGCTGCTGCAGCCCTGGTTACGGGTGGACTGGTGTATGGCGTAGGTAAGCTCTTTGACTGGTGGTGAGGGTGTAAAGGGCTTGAAACCTGGATCAATACACGGCAAGCTTGAACTGCTCTCGGACCGGGAGGAAAGCAATGCTCGAGGTTACACCTGATCAAATATTAGCCAACTTGTTGGTTAAAAAACAATCAGTAAAAAGTAGGTTTTATCTGCTTGATTTGATTGATAAAAATATTTGGTTGGA # Right flank : CAAAAAACAGGCCAGTGTGCGGATGACACCGGCCAGATCAGGAAGTGATGGCGACGGTTTAAATTTTCAGGCTTTTAAACAGGCGCTGCAGTTCAGTCGCTAAACTGTTTTCATCAGACAGCAGCTTGTCGATCTTCTTATCAGGGCTGCGCACCCCATGTGCCAGGGCGTTGCGGATTCTGCTCAGGGTTTGAAACTCACGCGATCCTGCCTGCAGTGATTTGCTGGCTTCTTCTCGATGGTCACGGGTGTCTGGCTCACGATTTTGATGCAGTTCTTCTGAAATCTTCGCCTCCAGAGCCAGAATGGCCGCGCGCAGATAGTCACCCCGCTTAAAGTATTCCTTCGCCAGTTTTTGTTCTCTATCGTGGCGAGAGCCTTTGCGATGCCATGCGATCCTTTGCTGTAACTCATCGGCAAATAATCGAGCGACGGGGTCCTGATCGATTTTACCCTCGATGCTCCAGGTTTCCAGCTTCTGTTTGGCCTTCGCTGAATTA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAGAGCTACCCCGACACCGGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 268540-268927 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMRS01000005.1 Nitrincola tapanii strain MEB193 NODE_5_length_269635_cov_95.402085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 268540 37 100.0 34 ..................................... TACTAAGATAGTACGAGACTCGTGAAACTTACCA 268611 37 100.0 32 ..................................... CGTTTCTGAACATTCTCGGCAAGCTCAGTTAG 268680 37 100.0 34 ..................................... CAAGCGCGCTGCGCGCACTGAAATACGAATACGC 268751 37 100.0 32 ..................................... CAGATCGCTTCATGATTTGTGGATTGATTGAA 268820 37 100.0 34 ..................................... AGCTCCCCTTTGAGTGGAATTTAAACGGTCATAC 268891 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 6 37 100.0 33 GTCCGAGAGCTACCCCGACACCGGAGGGGATTAAGAC # Left flank : CAGGCCTATGCGCTGCAGGAATCTGTATTTGCATGGTACGGAACAGAGCAGGCCAAGCTTCAATTACAGGCACGAATGCTGGATTTTATTGATACAACAGAAGATGACCTGCGTGGTTACAGAATGCGCGCGGGCACCGAGATACAGCTATGGGGCAAAAGCCCATTTACTGAAGGCGTGTTTGATACAGGCTACCCACCTCATCAGTGTCATCTGATTGATCCCGAGCTTCGGGAGCCAGATGAAGATCACGGACAGAAGTCGGAAGGGGAGGCAGCCTGAGCATCAACCAACCTTTTTGATCTGCTGTGTAATGGATCTGAAGGAATGGCTTGAAATCGAGCAGATTTAACGGCAATCTGAATCTGCTCTCGGACTGGGAGGCAAGCAATGCTCAAGGTTACATCTGATCGAATATTAGTCAACTTGTTGGTCAAAAAACAATCAGTAAAAAGCAGGTTTTATCTGTTTGATTTGATTGATATAAATTTTCGGTTGGA # Right flank : CCTCCATAGCTGCAACGGGTAAGTTAATTGGATAGCGTCCGAGAGCTACCCCTCGCTCCATTCCCGCAAGCTTGCCAGCCCCCTGCCCCCCTCTTCGTATCCCTAAAATCCAATCTGGATTCGGGTTGCGGAGAAAATAGGTGCAGAAAGAAATTCTGGTATTGGCCAAGTCATGCAAAACAGGTGGTTACTGCGTTGGTGGTATCGAGCTGGTATTGGGTGTCGACGGGCGCAACTACCTGAGCAATAAATGGATTCGCCCGGTTACAGTCACGGAAGATGGCCAGCATCAGGGTTGTCTGGGTAAGCACCTGTGCACGGGCTTCTCGGTATTCGATATCATCGAGATCAATGCGGTGCAGGCCGAGTACATTCCTGGTCAGCCTGAAAACTGGCTGCTACAGGATACACGCATTCGCAAAGTTGCCAACCTGTCTCAGCTGGATGTTATTAACATGCTGGCTCAGCAGGCAGGCTCAATCTGGTCTGATGACCGCACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAGAGCTACCCCGACACCGGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //