Array 1 167-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATUM01000110.1 Weizmannia coagulans DSM 1 = ATCC 7050 G318DRAFT_scaffold00110.110_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 166 32 100.0 34 ................................ TAAACTATTGTTACCAGTCCACCCGCCGACATAA 100 32 100.0 34 ................................ CGTACGAGGAAAACACGTTCTTACTAAGTGGGGA 34 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Left flank : TGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAGATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCTGGGCAGAAAAGGCTGAGAAAAGTGGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTTCAGAATTCTGTCTTTGAATGCTATGTTGATGCAACTCAATTTGCATCTTTGAAGATTGAACTGTCTAATATTATTGACCCGGACGAAGATAGCTTGAGATTTTATCAGTTGGGGAATAACTATAAAAATAAAGTAATGCATATTGGGGCAAAACCATCTTTGGATTTAGAGGACCCATTGATCTTTTAGAGTGCGAAGGTGTAGCGCACACGATTTTTCCTGTGGGTTCGCACCATAATATTAACCAATATTTTACATATATTGGTCTTGCTTGGTAAATAGTTCTTTGTTTTATCAGAGGAAATAGCGGAATTTGGTTGTTTTGAAAACACACATTCGCATTTTTTGCCAAATTCCGCT # Right flank : TTA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20209-20501 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATUM01000048.1 Weizmannia coagulans DSM 1 = ATCC 7050 G318DRAFT_scaffold00048.48_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 20209 30 100.0 36 .............................. AGGCTTGATCCAAAGTTAAACTCTCAATCGCCTCTG 20275 30 100.0 36 .............................. TTTGGCATAACCCATTGGTCTGTCTTCACTTGCCTA 20341 30 100.0 35 .............................. ATTTTTACCCATGCACCGTTGCAAGGAACATTTAG 20406 30 100.0 36 .............................. CATGGACAGGCGTTCAGAAAGCTCTGTCCGGTATTA 20472 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GTTAGTATTTTACCTATGAGGAATTGAAAC # Left flank : AGTCAAAATATGGATTCTCGATGGGCAAGATTTCAACGCATTCATTTGACGCCAACCAAATGGATCTGCTGATTAAACTGCTGGCATACAATTTATTCGAGATCTTTAAAAAAGAACACTGTCCGCCAGCGTATCGCTCTTATACGATCAGGCGATTCCGGAGGGAATTCATCTACGCGGCTGGCGTGCTGGTCTATCACAGCCGAAGTGTCATTTTAAATATTTGTGAAACATACGCCCATAAAAAGGCATTCCGGCAAATGATTCAAAGTGTACGGCTGATTGACTGAGTGTGAAGGCTGAAACAGAATACTGGAAATTGAAACGCCCGCAAATGTGGGGAGGGGGCAACTGTGGCCTTAATAACCCAAAAATAGGCAGTTGTGATTCCATTTTTGATAATATTATCCATTTATTTTCCATATGATTCCAATTACCTGCATCAATCTAGTAAAGTTTTGCACTTTCTTAATTTGGGATAATATCAGTGAGTTTTTGGA # Right flank : AGGGTGATGCTAGTATAGTTTCATGGACACCCTTTAGTGAAATATAATATTAACGAAGGGATGTGTCCTGATATGGGTAACACAAGCGAAAAACGTAAAAGTTATCATGCTGAATTTAAAGAAATGGTGGTTGAGCTTTATCAAACTGGAACACCAGTAAAACAGATCTGCAGCGAATATGGCCTGTCTGAAACGACAATCTACAAATGGATCAGAAAACAAAAACCGGTTAAGCTGGATGACGGGAGCTCTTTTACCCCGGAAGAATTTCTGAACCTGCAAAAAGAATTGCACCG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 3-630 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATUM01000033.1 Weizmannia coagulans DSM 1 = ATCC 7050 G318DRAFT_scaffold00033.33_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 33 ................................ CACAGAAGCAAACCAAATGGCTTCCAGGCTTAA 68 32 100.0 35 ................................ CAACGTTTCGCCTAACACCGTCGCGCCACCTCCGG 135 32 96.9 35 ...T............................ CTCCTCGAAGTAGGCGACAGCTTGAATGACATAAA 202 32 100.0 34 ................................ AGTATTGGAAAAGTAGCCATGGGATCCGCGACAA 268 32 100.0 34 ................................ GGTATCAAATCCGTAATCTTCGAGAGCCTTATTT 334 32 100.0 34 ................................ CGACATAAGCTAATACCGCCGGAATCCCTGCCAG 400 32 96.9 33 ............A................... CAGCAAAAAACAAAACCGTGGGGGCCTTACCCC 465 32 96.9 34 ............A................... CTTTTGATAAATGCATTGCACGACCGGATGAAGT 531 32 93.8 34 ............A......A............ GTGAATCCAAAAGGTAGATAAAGAAACCTATGCC 597 32 78.1 0 ..........G.A.......A..A.A.A...C | G,A [600,612] ========== ====== ====== ====== ================================ =================================== ================== 10 32 96.3 34 GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Left flank : ACG # Right flank : CAACATCCACCAAATAGAAACAATTTTTGATCTTTTCTAAAACTTAACCTTTGATGCAACGCTTGGCATTCCCGATGGAATTGAACAATTATTGCTGCCAGAAGTGCTGCCGGTAATAATTCCGGTTCCTACTGTTCCATGCAGCCTTGCATGCAGCTGCCTGGCCAGAAAGAAAAGAGCCCAAGTCCCGCCTGCAGGAATAATAAAACAGAAGCAAGCAGCCCTGCCCAAAAAAGATTTTAAAGTTTTTCCCATTGAAGGCTTGCTGAGCGAACCAGACAAAGCTTTATCTCTGGTTCGCTCAGCCGCAAAACTGGTTGATGCCGCCTTCTTTTTTCTTTAAATCCAAAAAGAGGCGCAGATCGTGCAGGCAGCAGTGACAAACCCTCTTTGTGAAATTGCCCTTGTTTTTATAGTCCCCCGAACCGGGTCCAGGGCTTTTGCTTATTCAGCAGCCCCCGATTATGTATTTCTGTCATCCTCATCGTCCAGTTCCCTGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //