Array 1 1352-1674 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQWA01000039.1 Prevotella scopos JCM 17725 strain DSM 22613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1352 37 100.0 35 ..................................... GATTTTTTAATTTTCGTACTCATAAACTCTTTATT 1424 37 100.0 36 ..................................... CTCCAGTCTCTACCCGTTTGACGTTTTACCGCCTTG 1497 37 100.0 35 ..................................... CCGTATGTTTCTGTCCATTGCTTGGTTATCTTGTA 1569 37 100.0 32 ..................................... TAGGTGTTTTTTTCATATGAAAGTAAAAAAGG 1638 37 89.2 0 .....................T.........A..T.G | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 97.8 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : TCGGCGCTGATTCATGAAACGAAAGGTACGATAACATGTGTGGGATTTATGGGAGGCGATGGTGACCCAGCTGAAGTTGACCGATTAGCACAACACGTCTTATCTCATCACCCGCACCTGAAGATTGGTTGGTACACTGGGCGTACTGCAATCTCTCCGCTCATCGACCAACAGCACTTCGACTATATCAAAGTGGGACCTTATCTTCGTCATCTCGGTGGACTTGACTCTCCTCGCACCAATCAGCGGATGTATCGCCGCAGCCCCGATGGCAGCTTTGAGGACATCACCTCCCGCTTTTGGAAAGCCCATGACGACAAGAACTTATAAAAAAGTTGTCTTTGCTTGATAAGATTTATCCCTGCGTTCCTTGACTTTTTGATTAAAAATATCTACCTTTGCACTCGCTTAGGAAGCAGTTAATTTCTGTTAACAAAAACCTATCTGCTTGGGCTTATAAATGCCAATCCCGCTTATATAAAGGATTTGTATGTCTTGAT # Right flank : GAGGTGGCAAGTTTGAGAAATATAGTAATTCTTTAAGCATAGTACTTCTTCCTCTTTTAGCAGTACTCTCACTTTAGGAAAGGTCAGTCAGAAAGTAGTTTGTAAGAAAAGGTCTGCAACTCTTTGCCTTCAACTTTGGAATGATTATCTTTGTCATTGCGTTCACGGCTACTCCTTGTGATGGTGGGTGTGTTTTATAAGCCACTGTAAGTCATAGAGTAACTAAATAATGACCGATTCGGGTTTAAGACAATCATCATGGTGAAATTGTAATATATGCACAGCGTTCTCTAAGTGTAACGAATGATTTAAGGTTTCTCTGGCTCTTATATGTCTGCTTAATCAGCAAAGACAAGTTGAACTAAAATAAGTTTGCTGTCATTCCTGTCACCTTTAACAAATGATTATAAGGCTGATTCACAATGAGTTATCCCAGAATGTTAAAAGTGACAGCAAATGAAAACAAACTTATTGTAGTATATGTTTAACCCAAATCGGTC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 44315-49499 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQWA01000018.1 Prevotella scopos JCM 17725 strain DSM 22613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 44315 47 100.0 30 ............................................... TATAAGCAAGGAGAATTTAAGCCGATAATT 44392 47 100.0 29 ............................................... CAAACGTGAATTTATAAACCTTTTCGGAT 44468 47 100.0 29 ............................................... AAATCAGCTCGATCTCTTGTTGATAACTC 44544 47 100.0 30 ............................................... TAGCACTCGCCTTACCTTATACAATCGGTA 44621 47 100.0 30 ............................................... TACTTCTGCGAAATTGAAGCGTGAATACAT 44698 47 100.0 30 ............................................... CAAACGGTCTTGTTACTTCTGCTCAACTCC 44775 47 100.0 30 ............................................... TTTGCCCCCATACGCGTTTAGCGACCATAA 44852 47 100.0 29 ............................................... GGCATCTAATTATATGTCGGAAGATGTAT 44928 47 100.0 30 ............................................... TCAGATGATGATATACTTTCGCTTATTCCT 45005 47 100.0 30 ............................................... GTTCCCACGTATTCTAAGCTAAAGTATAAG 45082 47 100.0 30 ............................................... CCTTATGTTTGGGCTTCAAATGGTCTCGTA 45159 47 100.0 29 ............................................... GACGTTTGAATTTAACCCTGCTATGTTGA 45235 47 100.0 30 ............................................... GACGAACAGGGACGTATAAATCAAACAAGT 45312 47 100.0 29 ............................................... ATAGGGCGTCCGCACTTGCCTTATCTTAC 45388 47 100.0 30 ............................................... TTTGTAGCTAAATGCTCTGCTAGAGCAATG 45465 47 100.0 30 ............................................... ATACGTTACGTCTGACTGTTGTTATGCTTG 45542 47 100.0 30 ............................................... ACTTATCTCTACCAAATACCGGCGCTACTA 45619 47 100.0 29 ............................................... GTTCACATACTAGCCTAGCTAAGCGTCAA 45695 47 100.0 30 ............................................... CCTTAGTTTTACCATACCCTGTAGGTAATT 45772 47 100.0 30 ............................................... GATGCAGAGAATATGAATCTTACCAAGATT 45849 47 100.0 30 ............................................... TTACCTTATGCGGTGGGTGATTATGTACCT 45926 47 100.0 30 ............................................... CATGGGTGATGCTGGTTCTATGGATTTCGG 46003 47 100.0 30 ............................................... AGAATTATTTTCCTAAAACATTTGCGAAAA 46080 47 100.0 30 ............................................... CCCCTTTAACTCTTTTATCTGTATAGTTAC 46157 47 100.0 29 ............................................... ATGGCTGGGTCATACTCCTCTTCCCATTC 46233 47 100.0 29 ............................................... TTACCACCGTCAGTATCAATCACCTTCTT 46309 47 100.0 30 ............................................... TGTGTTCAACATTACAAGTTTCAAGACGCT 46386 47 100.0 29 ............................................... GGTGCAACAGATACAGTCCCTTGTGTATT 46462 47 100.0 30 ............................................... TATTCTATTACTACACCCTTGCCCAGACTA 46539 47 100.0 29 ............................................... AAATTATAATGTTATACTGTTGGCTTATA 46615 47 100.0 30 ............................................... GATAATATTGATAAGAATAATAAGAATAAG 46692 47 100.0 29 ............................................... ATGCTGTATCTCCTTTTATATAAGGCATA 46768 47 100.0 30 ............................................... GATAACACTGATAAGCGTAACAAAAATAAG 46845 47 100.0 30 ............................................... TTACTTCCTGTTGGTTGCTGGGAAGTTAAT 46922 47 100.0 30 ............................................... TTACAAAATGGAACGCCGTCAAGTGCTTTG 46999 47 100.0 30 ............................................... ATCGCTTACGAGGGTGTGAGATACCACAAT 47076 47 100.0 30 ............................................... ACATTCACGGGTATAGAGTTAAGAGACGAG 47153 47 100.0 30 ............................................... ATTGGGCTCATCGTTCTTTGATTTAATGAC 47230 47 100.0 30 ............................................... ATTATGTGTATTCATAGTATCGTTCCACAA 47307 47 100.0 30 ............................................... ATCGTACTACCACAACTAAGTAAGGAAGAC 47384 47 100.0 30 ............................................... TTAGCTTTAGATGTCGTATTTAGAGTATTT 47461 47 100.0 30 ............................................... TCCAGTTGATGTTGTTGAAAAGGCTTTAAC 47538 47 100.0 29 ............................................... TTAGTAGTTAAGTCATCCTGTATCTGTGT 47614 47 100.0 30 ............................................... TAGGGGGCAGCATAGCCCCCACAGCGTCCA 47691 47 100.0 29 ............................................... TGTTCCTCTTGCACGTCTGAAAGAGATAA 47767 47 100.0 30 ............................................... TTAAAGATAAGAAATAGATTTTTGGTCATT 47844 47 100.0 30 ............................................... GAATTTTGACATATTAAGTGTTGAAGCCGT 47921 47 100.0 30 ............................................... ATTGGGCTCATGCGTTCTTTGGCTTTTTGC 47998 47 100.0 29 ............................................... ATTGCAACGACACATTAGTCGGCTTATAC 48074 47 100.0 29 ............................................... GCAGAAACTATATCTATGCTACTGGTCGT 48150 47 100.0 29 ............................................... ACTGACTATTGAAATACCTTTGTATTATG 48226 47 100.0 30 ............................................... GTCATGGTCTTAATTAACTTTTGAGTTATG 48303 47 100.0 31 ............................................... TTATCAGTTTAATATGGGTTACACTCCAACT 48381 47 100.0 30 ............................................... CAAACTTATGATTTACATCTTCGTAAAGGT 48458 47 100.0 30 ............................................... TGTCAGGATGACGAAGAATCGTTGCGCTTC 48535 47 100.0 30 ............................................... ATAATGGACCTACTTTTTCATCAGTTATAC 48612 47 100.0 30 ............................................... TTATGGGAGTTACGGGCGTTTCCTTTTTGA 48689 47 100.0 29 ............................................... CATGTTAACACATCCTATCGTAACTATAT 48765 47 100.0 29 ............................................... TTAGCTTTAGATGTGTTCTTTAGAGTATT 48841 47 100.0 30 ............................................... ATAGCCGTCCTTATAGTTTACCTGAACAGC 48918 47 100.0 29 ............................................... ATTAGCATTATATTTCAATTACGAGGCAT 48994 47 100.0 30 ............................................... TCTTAAGATAGATTATTTATAAACATAAAA 49071 47 100.0 30 ............................................... TCAAGTGGTAAGGACATTTGAGGTGAGCAG 49148 47 100.0 30 ............................................... CTCACTGCGTTAATGGACGTTTCGCACTAT 49225 47 100.0 29 ............................................... GCAGCCGACTTGCAGCCTGTCAATGGTAA 49301 47 100.0 29 ............................................... ATAAATAAAATAACGAATGAAACAATCAT 49377 47 100.0 29 ............................................... CAAACTATTTTGCATCAGCACTTCTGATG 49453 47 93.6 0 ..................................G.T..A....... | ========== ====== ====== ====== =============================================== =============================== ================== 68 47 99.9 30 GTTGTGCGTAATACTGCAAAGATACACATTTTAAAGCAATTCACAAC # Left flank : GCTGCAAGTCTTGTTAAATGTTATAATGGAGAAGCTCGTGAGATATCTTATCCTTCTTTTCTTTGATGCAACGACTAAGTGAATATCGGGTTATGTGGGTGATGGTCTTTTTTGATCTTCCAACTAATACAAATAAGGAGAAACGTGCGTACATGATTTTCCGAAAAGACCTGATGAAAGATGGATTTACGATGTTTCAATTTTCAATCTATGTCCGGCATTGTGCAAGTAAAGAGAATGCAGACGTACATGTGAAGCGTGTAAAATCTTTTATGCCAAACTCTGGAAATATTTGCATAATGGTTATTACCGATAAGCAGTTTGGGGAAATAGAACTTTTTAGCGGAACACAACCCAAAGAGCCAAATGCTCCAGGTCAACAGCTTGAGTTATTTTAAAAAAGAGCCCTGTCAATGATGACAGGGCTCTTTTAAATAGCAGTTTTTATTTTGCACATATGTCTTGTTAGCTTCTGATTATCAGAATAATATCTGATTTCG # Right flank : CTTGCTTTTATTAAATCATCGATTTTTATGTTCTTTCTATGTTATTCTATACCTCTTATGAAATCTTTTGCATTTAGAAATTTGTTGCTCCAAGAAATAATTGAATATTTACAATCGAATGCTCTGATTCTATGTAGGATTGTATTTCCATCCGTGATGAGGTTTTTTTATTAGAGCTTTTTGAATGCTCTTACTATCAAATAGTAGCTATTGTTTTTCTATCTTGATACTCTTTTATAATATTGAACTATAGTCTTATGTCTTTTTTCGTTTTACCAATCACGGCATAAAATAAACTTGCTGTCACTCCTGTCATTTATGCTCTATACTTAACTTGTTAGTTTAGAGCAAGATAAATGAACTTTTAAAAGTGACAGCAAATTAAAATAAAACAATCTCTCGTGTATGTAATTCTTTCTCTTACATGAGAAGTCTTATCACACTATAGCTAATCGAGATATTTCAATGACTCGTTCTTCGTTTAATTTGTTCGTGTTTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGCGTAATACTGCAAAGATACACATTTTAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 28568-29901 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQWA01000017.1 Prevotella scopos JCM 17725 strain DSM 22613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 28568 37 100.0 35 ..................................... AACACGAACATAGTTCTCTTGAGGAACAACGTTCA 28640 37 100.0 35 ..................................... TGCGTCTTTGCAGATGTAACCTGTAACTGAAAAAT 28712 37 100.0 34 ..................................... TCTTAAAATATATTGTTTGAAGTACTTCATAAGT 28783 37 100.0 34 ..................................... TCTTCCAACACCAAACTAAACTACAATTATAATA 28854 37 100.0 36 ..................................... AGCTTTATTTTTTCTGTCATAAAGCTGTCTATTGCC 28927 37 100.0 34 ..................................... AAAACATTTTCATATCTTTGTTTCTTTTTTATGT 28998 37 100.0 36 ..................................... TCGTACTGAACTTCAGTATGCTCCTCGAATAAGTCA 29071 37 100.0 34 ..................................... CCAATGCATCAGCGCCATTTGAGAAATTCAATAG 29142 37 100.0 35 ..................................... AAATATTTATCGTATTTTGGAATTTCCGAGAAAAC 29214 37 100.0 36 ..................................... AATTAATGAAATCATACATCACAATGCTAAATGTTA 29287 37 100.0 36 ..................................... AGTGCCGCAAAGTGTTGAAATACTGATATTACCGCT 29360 37 100.0 34 ..................................... CAAGCACGTGCGATTGTTGACATCTTGTTGTTGT 29431 37 100.0 37 ..................................... CAAGGTATATATCACATACCAAGTTAACTGTGTCGTT 29505 37 100.0 36 ..................................... AGTGCCGCAAAGTGTTGAAATACTGATATTACCGCT 29578 37 100.0 34 ..................................... CAAGCACGTGCGATTGTTGACATCTTGTTGTTGT 29649 37 100.0 35 ..................................... GCTAAAACCCTTCTTGCGTCCTCAACCTTTAGGAC 29721 37 100.0 36 ..................................... GGAAGTATGTTTTTGTTGCAGAATTTCAAAGATATA 29794 37 100.0 34 ..................................... CATTGAGAGAGTCCGCAATACCTAAGATAGTGAA 29865 37 91.9 0 ......A..............A............T.. | ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 99.6 35 CTCAGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Left flank : TCAGTCGAAGCCTTAAACCCATCCTATCACATTGATAGATATAATCTTACCCTGTTTTAATCAGCCGTAAATCATGATATTTAGAATTAAAAAGTAAGCAAATGTTTCTTTTAGTCCTGATTTCCATAGCCTGAAACCTTGACACTATTTCATCTCCTCTGAGTAGTAGTTTTTTTGTTTTGCCTGTCAGCTTATGATTGCGATACACCAAGACGTCACTAAATAAACGACTACTTCCTACGAATATTACGAACATTAGTTTATTCGGGGCAATCAACTCACACAAAACGTTATAGAGTCAGTTTAAGGGAAAAATGTAAGTCTGATTGAAAAAGCAGCCACAAAATAAAGCATATTTAACAAATTATCATACACAAGTATGATTCTTTATTTGTACCTTTGCAGCCGAAAAGAAAGCAGTTAATTTATGTTAACAGGAGGCTTTTTTAAGATCAAAGACACTTCAAATAGTGATAAATAAAGGAATCTAAGTCTTAGCT # Right flank : CTCGCAACAATTATCCTTAACTCATACTTTTGAACATTGACTTGTTTTTCAATCTCATCAATGGATACATGTCTTAAATAAACTTCCTATACGTGAGATATTAGAAGTCTGTTGCTGCCGTCATTCTGATTTCACCATACGATAAACACGCAAACACTTGACTATATAATTTTCGTTATTAAGCCTACTGGTTTCTTGTACCCATTCAACAATGTGCATGTTCAGTGTACATGGAAAATGGTAAACATCATGAATACTTTTTCTATTTCATTAATAAAAATATAAAAAATGATGCACAATTTATTAATTTTTTATATCTTTGCATGCATAGTCCTAATCACCATAAATCATTTCACCGGAAGAAATTCCTTGATAAGAAAGATAGAGATTTAGCGACAAAGTCACTATAAACATTACCTAAGATATGAAAACAAAGAATGACTAAGATAAAAACACTAACCATACAGTTTGACACACCTTTACGGCGTTCAGAGATTCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 44103-46015 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQWA01000017.1 Prevotella scopos JCM 17725 strain DSM 22613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 44103 37 100.0 31 ..................................... ACAACACTCTTTTCATAATTTGTAGCACAGA 44171 37 100.0 36 ..................................... ATGTTATCTTGCCCTTCTCAATTTCCTCTTTGATGC 44244 37 100.0 35 ..................................... CTCTGCAAGAGTAGAATAGTAATCTTTAGGAGCTT 44316 37 100.0 38 ..................................... TTGCCCGTGCATGATTTTATGCACTTTACCATCATCGA 44391 37 100.0 38 ..................................... TGATTCAGGACGTGAAAGAATGTGATTAACTGCAAAAG 44466 37 100.0 33 ..................................... GTTTTCTTTGTACCACAAAGTGTCGAAATTGAA 44536 37 100.0 35 ..................................... AGTGCAGAACGACTACACACAAAAAGTACAATACA 44608 37 100.0 34 ..................................... CTTACTAACTTTTGGAGTACCCGCCAAAGTAGCT 44679 37 100.0 36 ..................................... ATCTTAGATCTTTCTGCTCTTTTTAAAGAATGACCT 44752 37 100.0 35 ..................................... GCCTCCCTGTGCTGCTAAATCGATAAAATCAAATT 44824 37 100.0 33 ..................................... GTTATATATTGGATTTATCGGGTTTCTGGAGCT 44894 37 100.0 33 ..................................... TGGTTTATAACCATTTAAAGCCTCGATATTCCA 44964 37 100.0 34 ..................................... TTGCAGATGTAACCTGTAACTGAAAAATTGTTCA 45035 37 100.0 34 ..................................... CGAGCGATGGCTGCCTTGTCGAAGTTCTTAACGT 45106 37 100.0 35 ..................................... ATCATATTCTGCTTTTGTATTGAATGTTTTTAAGT 45178 37 100.0 34 ..................................... AATCTATCAATTACTAATAGCTTGTTTAGGTCAA 45249 37 100.0 34 ..................................... CATATTAGGAAAGGCTTAAATAGTTACTACCGAT 45320 37 100.0 34 ..................................... CAATCTTAAAACTGTTACCCGCAGTCAACAAAGA 45391 37 100.0 36 ..................................... CAACCTTATTATCAGAACTACTAAAAGGATTAGTAT 45464 37 100.0 34 ..................................... GCAGCATCATCATTGTCTCGAAACTGAGCAACAA 45535 37 100.0 35 ..................................... CGACTAAGAGGATTAATAACAATAACTAAAAACTT 45607 37 100.0 35 ..................................... GTAACAGCCTCAACCCATTCACGTTTTTCACCATT 45679 37 100.0 39 ..................................... GTGCAGAACGACCACGCACATGAAATACAGTACAAATGA 45755 37 100.0 37 ..................................... ATTGCAATACGTTTGTGTATCCTGCGTTCTTTACTCG 45829 37 100.0 38 ..................................... TGAGAGTACTCTCACCAACGCACTACTCTTAATGGTCT 45904 37 100.0 38 ..................................... AAAAACCTAAATCAATTCAAAGCAAATTCAACACCTAA 45979 37 94.6 0 ...................................TG | ========== ====== ====== ====== ===================================== ======================================= ================== 27 37 99.8 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : ATGCTATTCTTCGTTATGTATGATATAGAAAGCGACAAGGTGCGCTATCATATTGCAAAATATCTGGAACGTAAAGGATGTACTCGCATACAGCGTTCTATCTTCCTTGCCGACCTCGATAAGAAAGTCTATGACTTAATCAAAAGCGACCTTGAAGAAGTACAATCGCTCTATGACAATCATGACAGCATCATCATATGTCCCGCCTCCACTGATCAATTACAAGCAATGAAAATTATCGGTGAAGATATAAGTATAGACATCATAACTCGTTCGCGTAACACATTATTCTTCTAAGAGATAAAACTAACAAAACTCTTTTAGCAAAAAAGAATGTACTATTTCTTAAAGAATATTTAACGCAGTGATCTTTGACATCTTGAAAATTATTTGTAATTTTGCACCCGCAAATAAGCGGGTTAATTTATGTTAATAAAAGCGTTTCTAAAAGCTTGAACATACCCCAAATACTCGTATACAAAGGAACATAAGTCTTTGCT # Right flank : GTAATCTAATAGTACTATAACAAAGATTCCCCCGATATTAAGAAATAACAGAGTTCACATATATCATAAGTTCTCCTGACTTAACTAAGATTATAGCAAGCTATTTTCTCAAGTTAAATTTCCTGTCACTCCTTTCAGCCTACACACGCATACAAACACTTGATTAACAGGAGATTTGTTAGATATGTTAAAAGTGACAGTAAATTAAAAACAACATTACTATCATAAAAATCACCATAAATCTTCTTCTAACTCAGTAGACTTTATCACTCCATATTTGGGAAATAGCAAAATTATAAACACGCAAAGCATTTATAATGGCATTATTTTTCGTAAATACTTCTTTCATAAACAGAACCAACTACCCCCTCCATTCCTACAAGTAAATAACAAAATAAGTAATATAAATGTTTTTGACTTATAGAAGTTTTTTCGTAACTTTGCTCTCAGAAACAAATTAAAATAAAGATTAGAACGTTATGCTTACATTAAAGCTCATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 43703-40947 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQWA01000015.1 Prevotella scopos JCM 17725 strain DSM 22613, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 43702 37 94.6 33 ..T...............................A.. ACAGCCTCATCTACAGACGACATCTCTGGATGA 43632 37 94.6 35 ..T...............................A.. AGCTCAATTCCCACGTAAGAGTTGGTTGAGCCTGG 43560 37 97.3 38 ..................................A.. TTATAGATACTTGCTTTTTTTGTACCCAAACTTGTTTG 43485 37 97.3 35 .....................G............... TTAACTAACTTGTAGAACGTATCAGCTTTGATTCG 43413 37 100.0 32 ..................................... TCTTTGTTACAAACTTTATCGCCAATCTTAAT 43344 37 97.3 32 .....................C............... TCATTGTCTTTATCGTAGTTCATTTCAGATGA 43275 37 100.0 35 ..................................... TTACACAAATTAAGTGCAGTTTCTAATATCTCTTT 43203 37 97.3 33 .....................G............... ACCAAGTTTTCTCATTTTATTCCACAAGATAGA 43133 37 97.3 35 .....................G............... TTGCTACCCTCTATACAGTAGCTTGTACTTGCCCA 43061 37 100.0 39 ..................................... TTTGCTGTCTGTTTCTCGAAGCCTACGAATGTCTCTTGA 42985 37 100.0 34 ..................................... TTATTAATACCTAAGTTAAATTTCATAATTTTAT 42914 37 97.3 33 ...........C......................... TAAGCCTTTTTTCTGTTTAAGCATTATCATCAC 42844 37 100.0 35 ..................................... CATCTTTGTTCTTCTTTGACACTGTTTTGAGTGTG 42772 37 100.0 34 ..................................... ATTCCTATAATTGCAGGCGCAAACAATACGAACG 42701 37 100.0 35 ..................................... AACAGGTTTGTCCAATGTTAGACACAAGCGAATGT 42629 37 100.0 32 ..................................... TTCTAATCTCCAGCGAGGAAACTTTCTGCGAT 42560 37 100.0 34 ..................................... ATCATCTTATGCACGCGTCCATCTTCGAGTATCA 42489 37 100.0 34 ..................................... GAATTGCTAATATATAATATTTATGCTTTACGAT 42418 37 100.0 36 ..................................... AAATACCTCTTCAAGTACTGAGTCAACTTTCATTAC 42345 37 100.0 35 ..................................... AAGATAATAAGTGTTCCAAGACTCAAAACGCTTGT 42273 37 97.3 35 .....................C............... AAGATTTTAGATAATCTTCATAAAGGCGGTGCTTT 42201 37 97.3 35 .....................C............... CGGCGAATAATTCGTCCATGCTATCATAGTTCTGG 42129 37 97.3 37 .....................C............... TAGAACTCAAGAACAACATTCTTGGTTCCCTTTCTGT 42055 37 97.3 36 .....................C............... GCTTTAGAAGAAGCCAATTCTATATGCTGAGATATG 41982 37 100.0 34 ..................................... AGTGTAGCGATTTTAATTTCCTTTTTCATTGTTG 41911 37 97.3 34 ..................C.................. CTTACGTCAATGTAGATCTGACACGCAATAAATG 41840 37 100.0 33 ..................................... TACTTTGTATGTTCATTCGATGGGATGATATCA 41770 37 100.0 33 ..................................... ACTTGCATTCTCATCATCACGAAGTTGTGCAAC 41700 37 100.0 33 ..................................... ACTCCATATACCGTAATATACTGTTCCATCGAT 41630 37 100.0 38 ..................................... TTTCTGTTATAAGTTTTACACTTTTCTAGCTGTGTATT 41555 37 100.0 34 ..................................... ATAGTATTAAAAAAGTTTATCTTCGTCGAAGTGT 41484 37 100.0 35 ..................................... CCCATATAACACTATCTTTATAACGATTATAATCT 41412 37 100.0 35 ..................................... CTTGAACCTATGACCTTCTGATTATGAGTCTGCTA 41340 37 97.3 34 .....................G............... ACTTGTTTAAGCGTTGTTGTTCAAAAATCTGCCA 41269 37 97.3 34 .............A....................... TGCTTACCACCATTAGCTACTACTGCATCCAACT 41198 37 97.3 36 .......G............................. TCACCAACTAACTGCTGACGAAGGTTAACCACCGAC 41125 37 97.3 34 ......A.............................. TAATCAGCCAGTTCTGGTATTAGGCGAATCATAA 41054 37 94.6 34 .....................C............A.. TTTAGTTAATCTTTATAATTCTCCTCGAAATGAG 40983 37 89.2 0 .............................G.A..T.G | ========== ====== ====== ====== ===================================== ======================================= ================== 39 37 98.3 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : TCTGCACTGATTCATGGTGCGAAAGATACCATTACCTATGTGGGTTTTATGGGTGGCGATGGTGACCCAGCGGCTGTTGACCTGCTTGCAAAATATGTCCAAGAACGTCACAACGGTTTGAAGGTTGGTTGGTACACAGGGCGCACAGCAATCTCTCCGCTCATCAATCAACAGCATTTCGACTATATCAAAGTGGGAGCCTACCTCCGCCATCTTGGTGGACTCGATTTCCCACGCACCAATCAACGAATGTACCGCCGCTGCACAGATGGAAGCTTTGAGGATATCACTTCTCGCTTTTGGACACATCAGATAGGCAATAACCTATAAAAAAGTCACCTTTGGTTGATAATATTTAACCCAGCGTTCCTTGACATTTTGCTTAAAAATTACTACCTTTGCACTCGCTTAGAAGGTAGTTAAATTCTGTTAACATGAGCATGCGTTATTGGTCTTATAAATACCAATCCCGCTTATACAAAGGATTCGTATGTCTTGCG # Right flank : AGCTGGCAAAGTTGAGGTGGATTATTGCTTAGTATTTTTAAGCATGGTACTTCTACTTTTTTTAGTAGTATTCTCACTTTAGGAAACATTAGACAGAGAGTAGCTTATAAGAAAAAGTCTGCTCCGCTTGACATTCTGTTTTAGAATCATTACCTTTGCAATCGCTTTACGGCTACTCCTAAATAATGGGAAATGTAATTTTAGAGTCCTTGTAAGTCAAAGAATTACAGAATAATAATGAAAAAGTTTAAGACAATAATCATGTTACTATTGGTTGCTATTGCATTGTATGCGCAGCGAACTCCAAGAGTGACGAATGATTTTAAGGAAGGAGACTTAATCTTTCAAGTATCGCAAAGTCGTCAGTCGCCTTTTATTCAATTAGCAACTAATTCTCCGTGGTCACATTGTGGTGTGATTGTAGAAAAGGAAGGAAAACTCTATGTGCTTGAAGCCTCTAATGTTGTCAAGCTCACTCCACTTAAGAAGTGGATTGATAG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //