Array 1 40690-41204 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAZWM010000004.1 Mycolicibacterium fortuitum strain isolate_2 NODE_4_length_532858_cov_848.927246, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	============================	===================================	==================
     40690	    28	 100.0	    33	............................	GACGAGCGCGGCCGCCCCATCCCCGAGCGCGCC  	
     40751	    28	 100.0	    35	............................	CCCGGCGCCCGATCCGGCGTGCTCTGCAGCCCGCT	
     40814	    28	 100.0	    30	............................	GGTGGGTGAGCTGATCCGCAGACGCCGTGA     	
     40872	    28	 100.0	    33	............................	GCTGGACTATCACACGCCGGTGTGCGTGGACGC  	
     40933	    28	 100.0	    34	............................	CGAAGCCGCCGCATCGTGGCTGATCAGACCCCAG 	
     40995	    28	  96.4	    33	A...........................	CCTGCACGGCTCGATCCACGACGACCTCACGGG  	
     41056	    28	 100.0	    33	............................	CCAGATCGGATCAGCGTCGTCGAACCCCGTGAC  	
     41117	    27	  82.1	    33	............-T.......G..TT..	CCAGACCGTCCGCAACGAAATCCCGCGCGGCAA  	
     41177	    27	  82.1	     0	G...........-T.......T...T..	|                                  	G [41193]
==========	======	======	======	============================	===================================	==================
         9	    28	  95.6	    33	CTGCTCCCCGCGCAAGCGGGGATGAACC	                                   	       

# Left flank :   CGCTGGAGGAAGCGGCGACCGAGGCGGTCGGCACCGCGACCGGCGCACCTCCAGTCGCCGTCGAGCACGCCGACAGCACCACCGCGGCGGCGATGCCGGCGGCGGCTGCTCCAAGGCGCGTCTTCCTGCTCATGCGTTCGATTCTCCCAGAAGACGCCGAACAACCCGCCGAATCCGGTGTCACGTCCCCCATCCGGATGAGTTGCGCTGGAGTCGGATTCATCGGTCGGCCTGGTCCGTGAGGCGCTGTTCCACGGCGCGGAGGTCGGGTACCGCGTCGGTGAGGTTGGCCTGTTCCAGGAGCTCGATCACGCCGTGCAGTCGGGTCCGTGCGCTGCGGACGTCGTTGTGCACGGAGCGGTGCAGGTTCGTGATCAGGGGCCTGTAGCTGGTGCTCATGCCCGGCAGCGTGGCACCGCACTGCGGTGAGGTGATGCACGAGGCGCGGGTACGAAGCACCGACGAGCTCACTGGGGCTGTAACATTCCTGGTCAGTAAGT
# Right flank :  CCGCTCCATTCTCTGTTTTAGAGAACATCTGCGCAGGTAGGCGCGGTGGAGGGCTGGCGCGTCCTACTGGCGCGTGTTGGCCGCACGTGGCATGATCTTGATACCGGGTTCGCCCGGCCACCGCACCGGTTCGCCGGTGCCCTACCCCCGACCGCTCAGCGGATGCCCCGGGGGACTGGTGTGTCTGCACCGCGGTCGGCCGACCGAAAGGCCCGACCAGTGACCACCACCACCGTCACCACGCCGTTGATCATCGACGGCGTCCCCGTTCTCGAAGTGCCGCCGCGCACCGCCGCGGTGATGAAGAGCGTCTCCGAGCGCAGCATCCTGCGCTGGATCGCCGAGGGGAAGCTGCCCGCGCGCCGTCTTCCCGGCGGTCGTCAGCTCCGCATCGCCGTGGCCGACCTGACCGCGCTCGGCGAACCCGTCTGACCTACCCCGGAAACGAAGAAACCCGGCCGTGGGGGCCGGGTTCACGCTCAACTTCCGCCAAGAAGAAA

# Questionable array : NO	 Score: 6.04
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGCTCCCCGCGCAAGCGGGGATGAACC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGCTCCCCGCGCAAGCGGGGATGATCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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