Array 1 64882-63595 **** Predicted by CRISPRDetect 2.4 *** >NZ_MABI01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033855 CFSAN033855_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 64881 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 64820 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 64759 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64698 29 100.0 26 ............................. CGTCACTACCGAGACCGAGACCGAGA 64643 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64582 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64521 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64460 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64399 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64338 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64277 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64216 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64155 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64093 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63990 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63929 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63868 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63807 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63746 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63685 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63624 29 96.6 0 A............................ | A [63597] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82995-81014 **** Predicted by CRISPRDetect 2.4 *** >NZ_MABI01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033855 CFSAN033855_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82994 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 82933 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 82872 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 82811 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 82750 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 82689 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82628 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 82567 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 82506 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82445 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82384 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82323 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82262 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82201 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82140 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82079 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82018 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81957 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81896 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81835 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 81774 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 81713 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 81652 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 81591 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 81529 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81468 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81407 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81346 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81285 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81224 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81163 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81102 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81041 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //