Array 1 8240-11351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXEX01000075.1 Xanthomonas oryzae pv. oryzae strain DXO-165 contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8240 31 100.0 34 ............................... AGTCGCCAGTGAAGTCTCCCAGATGATCCCCCAA 8305 31 100.0 34 ............................... TCAGCCTCAGTGGCAGCAGCCACGTTGACGGATG 8370 31 100.0 34 ............................... TGCGCGAAGGGTACGAGGATTTTTTGCGGCTGGT 8435 31 100.0 34 ............................... GCTGTGAAGCGCAGGCACTAAAGACCCTTCGGGT 8500 31 100.0 35 ............................... CACCCTGTAGCTCGGAAATTGCCTGTCTGACGACT 8566 31 100.0 35 ............................... CACCCTGTAGCTCGGAAATTGCCTGTCTGACGACT 8632 31 100.0 34 ............................... CTGCACGTATTCAATCAGCGCGCTGTCGGTGCGG 8697 31 100.0 34 ............................... GTAATTGCAGCAGGTAGCAAAACATCAAAGCCAT 8762 31 100.0 36 ............................... TTGACCGTCGCGCCGAAGCTGCGCTGCGCGCGCACC 8829 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 8895 31 100.0 36 ............................... TATGTCGGCGGCAAGAAGTCCGAAAAGCAGCTGCGC 8962 31 100.0 33 ............................... TCCCAGCAGGCCTTAACCGCATGGTCTTTGCAG 9026 31 100.0 33 ............................... AGAGGTGCTTGTTAGTGCTACGGGGGCGTATGC 9090 31 100.0 35 ............................... TGGGATCAGCGCACGGAATATGGTCGTCTGCGTGC 9156 31 100.0 34 ............................... CTGATTCCACTGCTCGATTGCCTTGAGGGTGTCG 9221 31 100.0 34 ............................... CTCAAGATTGCACAGTATCCAGAGGAGGTGACAA 9286 31 100.0 34 ............................... TGCATCTCCTCTGGACTGCTTCTAAACTCAGCAT 9351 31 100.0 35 ............................... CAGCTGATGCTGGTACTTCAGCTGCTGAAGCTTCT 9417 31 100.0 35 ............................... CTGTACGGATGCAGCAGATTCTGGGCGCTTGAAGT 9483 31 100.0 35 ............................... ACATGTTCGTGACTACTTAGGAGATGAACGGGAAA 9549 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCGGTCCAGGG 9615 31 100.0 35 ............................... ATGGCAATGCGCAAAGCACATGGCAACACTGCCAC 9681 31 100.0 34 ............................... AAGAGCCTACGGAGCCGGGGCAGCATCCATTGCA 9746 31 100.0 35 ............................... TTTCAAATGAGCGATATGCACCTGCCCACTGACAG 9812 31 100.0 33 ............................... TTCCCTTGTATGGTGAGGATGGTCAGTTGGCAT 9876 31 100.0 34 ............................... TACAGTTAACAAGTGTGTTGAGGCAGGAGTAAAA 9941 31 100.0 35 ............................... ACCATGTACTATGTAGCCCTTTCCCTTGTGTGTGA 10007 31 100.0 34 ............................... TCATACACCTACCTGCCGTTTGAAAGTGTGTACG 10072 31 100.0 34 ............................... ATGACAACAGGATTGCAAATTTGAAGAAAAGGAC 10137 31 100.0 37 ............................... TAATATGTTGCGGACATAGGGTGGACAACCCTTGTTC 10205 31 100.0 35 ............................... TGTAGGTCCAGGCTCCCTGGCTCTGGCCTTGGTAA 10271 31 100.0 35 ............................... AGGTTACCTTGGCTCGGAGGCACTCAGCAAAGGTG 10337 31 100.0 36 ............................... AGCCAGACAATCAGCAGTATCAGCAGTGCAGACCAC 10404 31 100.0 33 ............................... TCTTCTAACTACATTATGTCGGCGGAGCTATAA 10468 31 100.0 35 ............................... CGGTACTTGTAGATAAACTCCTGCACCCTGAGCAC 10534 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCTGTGCAGGG 10600 31 100.0 35 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAA 10666 31 100.0 33 ............................... CCCGAGTCCAAGCCATACCAGACGGCGACGACC 10730 31 100.0 34 ............................... TTGTGGGACACGGCGGATATGGAGATGTGGGAAA 10795 31 100.0 35 ............................... TCGTAGAGCGTGACAGTGCTGGGAAGGTCTTGAAC 10861 31 100.0 35 ............................... GCATCCACAGCAGGGATGCTTGCTCAACAAAGTGC 10927 31 100.0 34 ............................... GTCGGGTCGACGGACGGTCGTAGCTCACCCACAC 10992 31 100.0 34 ............................... CGGACTCAGTGGTGATCCGGTATAACCGAGTTGC 11057 31 100.0 35 ............................... CTCGCCAACGTGTGGGATATCAGCACCGCGACGGG 11123 31 100.0 35 ............................... CTGACGCGCCAGCCTGCGACGTACGCAACCGTGAC 11189 31 100.0 35 ............................... GCGCTGGCCGCCTTTACCTGGCGACTCCATCACCT 11255 31 100.0 35 ............................... GCATCCACAGCAGGGATGCGGCCTCAACAACGTGC 11321 31 80.6 0 .........GAC........G........CG | ========== ====== ====== ====== =============================== ===================================== ================== 48 31 99.6 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACACCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CTAGGGTCGCTGGCTGGTCGCTGCTCACCACAGAGACGGGCCTTCCGTGGCGCACGGCTTTGAACGGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 277-641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXEX01000081.1 Xanthomonas oryzae pv. oryzae strain DXO-165 contig_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 277 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 343 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 407 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 473 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 540 31 100.0 40 ............................... GAGTGCCCGGGGTCGGTGTCGGTGTCGGCGCAGGCTGGCC 611 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 6 31 100.0 36 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TCACGGGCGCGTGGATTGAAACAAGATCCTGATTAGCCCTGACCTTCAGCTGCAGCACCTCCGCGCTTATCGCTAAACCGGCCCAATGCCAGGCCGCCATGGGGCCCTGGCTGAAAGAACTTCGCACCGGCTCCTCGCGTCAGGAGCGCCAAGATCAGACATCATGGAACACATCGGTAAAACGAAGCTATTTGCAGGACTGCAACAAAAATCCAGCTGAGGGTCAGGGCTAATCAGTAACAAGATTGGACCCTCGCTGGTGATGATCGGCGCGGCG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAACCTGCCCTTCAGGCTGTCCACGTCATCGCGCACGCCACGGGTCTTGTGAGCAGGCAAACCATCAAGCACCAGATGGATTGGACGGCGACGGCCTTTCATCATTCGCTTGAGCAGGTCCACGAACAATTCACCGTTCAAGCCGCCGCTGTACACGGCGAACCAGAACCCGCCCTTGCTGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //