Array 1 935865-931371 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031697.1 Xanthomonas oryzae pv. oryzae strain ICMP3125 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 935864 31 100.0 33 ............................... ACCGGGGCACAAATGGAGATGGCCGGCGAGGCC 935800 31 100.0 34 ............................... TGTTTCACACGTTCCAAGGCGATTTGGTGGCACC 935735 31 100.0 36 ............................... CAATGGTCTTACCCGATACGGAAGGCACATCAAAGG 935668 31 100.0 33 ............................... CCATTTACAGACAGGCCTGGGGGCGAGGTTGCA 935604 31 100.0 35 ............................... ATAATCAGAATAGCCCCGGCGTTATAAATGGTGTG 935538 31 100.0 34 ............................... CCGATCTTAAACCCGCCAATATAGTTGTTGGCAT 935473 31 100.0 33 ............................... GGGATCGATTTGCCGGGCCTGCTCTTGCTGCGC 935409 31 100.0 34 ............................... GGCCTCTAGTATCTTCTGTCCCCGGGCGGTGCTG 935344 31 100.0 34 ............................... TGCGCCGCGTGTTTAACAAAATTACTGAGAGGAG 935279 31 100.0 36 ............................... ATACAACCGCCGATTTGCTACGCTGGCTCGGCGGTC 935212 31 100.0 34 ............................... TACAAGTACGCGCCTGCGCGCGCAGCGGCGCCGG 935147 31 100.0 35 ............................... TGTAGCGCGGCGTTCTCTGCGTCGGTCGCTGCTGC 935081 31 100.0 35 ............................... CAGGCCTCTGCCGGGCGTTGGAATGACCGTTCGGC 935015 31 100.0 34 ............................... ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGT 934950 31 100.0 35 ............................... TTGCACCAGCGCGTACACGCTGTATTCGCTACCCG 934884 31 100.0 36 ............................... CGCTTCTCCGGATCAATAGGTCTGGCGGAGTAGAAA 934817 31 100.0 34 ............................... AGGCCACGGATCAGGCGGTTATTCATGTACGAGG 934752 31 100.0 35 ............................... TTCAGCGCTGCGGACTCCATCACCAAGATGTGGTC 934686 31 100.0 36 ............................... CGCAATATCCGAGACGGTGTAGTTGTGGATAGACGA 934619 31 100.0 36 ............................... ATGGAGGAGGCAGGCCTGCATGGGCTGCAATTGGAC 934552 31 100.0 34 ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 934487 31 100.0 35 ............................... TGGCCCGTGTGTTGCGGAGGATACGTTTTTCCTCC 934421 31 100.0 33 ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 934357 31 100.0 36 ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 934290 31 100.0 35 ............................... ATGTAGCTGGCAAGCTGCGGAGCATCGCTCAGGAT 934224 31 100.0 34 ............................... TCGGCCACGCTGGCGCTGTCGTTGAACGTCATGT 934159 31 100.0 36 ............................... GAGCGTTGGAATCCTATGGTAATACCCCTCCACAGC 934092 31 100.0 34 ............................... GCCAACTCAATCGCCGCCCAGTCAATCGGGTTGA 934027 31 100.0 33 ............................... AGCATCTTCCTTTACCTTCAGGCCGCGGATCAG 933963 31 100.0 35 ............................... TTCCGCCACGATACTGCGTATGTCTGGACACCATC 933897 31 100.0 34 ............................... ACAAGCTGGCTGTAATAGCTGCTTCGCGCAGCAC 933832 31 100.0 34 ............................... CAATGTGTTGTTGTCAACCTCAGCCACAACATGG 933767 31 100.0 34 ............................... GGGAGGGTTATATCCCTCCCAGCATCTCGCCCAC 933702 31 100.0 34 ............................... AGGGTCGATTTGGCGGGCCTGCTCTTGCTGCGCA 933637 31 100.0 35 ............................... TATGAAGACTTGTACCGACGGCCACAGCTCGGGCC 933571 31 100.0 34 ............................... ACAGTGACCTTGCCTTGATGCGCAATCAGCTGGT 933506 31 100.0 36 ............................... TCAGGCATTCCGCCCTCTTGCCAATAAATAGGCACA 933439 31 100.0 34 ............................... TCGGCATCCCGAAGAACAAGCTGAGGCTAGAGGG 933374 31 100.0 35 ............................... CAAGAAGTTTACCTGGGCGAATGCCTGCTCGTTAC 933308 31 100.0 37 ............................... TCGACGAGCGTGCAGGCCTTGGCAATTCCTTGATGAG 933240 31 100.0 35 ............................... CAAATCTGCTGCCGGGGAATGTCAATCATCTGACC 933174 31 100.0 34 ............................... TTCCTGGGATTCCTATTCGCCATCGATGCAGCAG 933109 31 100.0 33 ............................... GAGCTCATCGAGTACGTTGTTGAGCGTGGTCTG 933045 31 100.0 34 ............................... GAAGGCGCGGGTCTCAGAGACATCGAGGGTCTTC 932980 31 100.0 34 ............................... TACGTCAACGAGCGCAAGCCGCTCGCTCCGCCAG 932915 31 100.0 34 ............................... TGCGCCTGAGGATCTGGTGCTGATGGGTCCACCA 932850 31 100.0 34 ............................... CCTGACCCCGCCGGATACCCGTCTGACCGTCCGT 932785 31 100.0 34 ............................... CAGCAATACTCGCTGCCGTTGCCTCATGGCCAGC 932720 31 100.0 35 ............................... TCCGTTGCTGCTGCAATCAGCTGGTCGAGGTCCTG 932654 31 100.0 36 ............................... CTCTAATTGTTTGGTGCTGCTATGGCACTGCTGACA 932587 31 100.0 35 ............................... TCGGCCACACTCGCCGAATCATTGAACGTCATGTA 932521 31 100.0 35 ............................... AGCTGGGCAAAGCCAAGGAAGGGAGTCAAGCCGGG 932455 31 100.0 35 ............................... CCCGAGTCCAAGCCATACCAGACGGCGACGACCAT 932389 31 100.0 35 ............................... CCGTCGACAAGCACGCGTCGGGCGATCTGGACGGT 932323 31 100.0 35 ............................... GTGAACAACGCTGCCATCGTTGCTGAGGGCGGCCT 932257 31 100.0 36 ............................... CACGGCTCTTTCTGGGATCAAACCACGGAATATGGG 932190 31 100.0 35 ............................... TGCTTCGTGCTGCTGTGACATGCTTGGCACAATGG 932124 31 100.0 35 ............................... CGGACGCCTGATGGCAAGAGGTACACCATGTACCA 932058 31 100.0 35 ............................... TGATAGGGCGCTGCCCCATGCGCAAGCATGATGCC 931992 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 931927 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 931861 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 931795 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 931728 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 931663 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 931598 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 931531 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 931466 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 931401 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 69 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //