Array 1 60-368 **** Predicted by CRISPRDetect 2.4 *** >NZ_FVTJ01000152.1 Mycobacteroides abscessus subsp. abscessus strain 490, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 60 36 100.0 30 .................................... TGTAGCAATTCCTTTGCGCTTTGCACGTTC 126 36 100.0 31 .................................... AGCTTGTCTAGCTAATTTAGGTAGAGACGGT 193 36 100.0 38 .................................... GAGTCAACCATGGAAAGGTTCTAAAGAAAATGTAGCTT 267 36 100.0 30 .................................... CACCATTCACATAAACGTTATAGCCTGCTA 333 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 100.0 32 GTTCCTTCATACCAAAAGTTGAGAGAGTACCAAAAT # Left flank : TCATACCAAAAGTTGAGAGAGTACCAAAATCATACTTGATAACTTCTTCCCCAAATTTAG # Right flank : CCTTACGGTAGTTACAATACAGATACATTAGTTCCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTTCATACCAAAAGTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 937-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_FVTJ01000110.1 Mycobacteroides abscessus subsp. abscessus strain 490, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================== ================== 936 36 100.0 30 .................................... AGCGAGCATAGGCTAACGATATGCCAGCAA 870 36 100.0 28 .................................... AACTATACAACTACTATATAAGTATATC 806 36 100.0 31 .................................... AAAAAAGTTTAGTATTTTTCTAAATTCTTTT 739 36 100.0 29 .................................... TGTACTATTAACGGTGTTTTGGGAACTAT 674 36 100.0 29 .................................... TAATCATAGCTGCAGTAGGTGACTCCTCT 609 36 100.0 32 .................................... TTTTAGAAATTCTGGGTTGTTGGACGTTCCAA 541 36 100.0 30 .................................... GATTCTAGAGAAATGCTAGGATTTACACGC 475 36 100.0 30 .................................... AACACGAATGATTTAACATCTTTTCAACTC 409 36 100.0 30 .................................... TGATGACATCATCGACGGACACGTCATCCA 343 36 100.0 67 .................................... CAAGTGAATCAAGTAACAGAGTTATCGAAGATTTTGGTGGAGGCAACTGTTGCCGGTCTACCTGCGG 240 36 100.0 30 .................................... ACCTCGCCCGAACTGATAGTTTGTTATGTT 174 36 100.0 29 .................................... ACGAACCGAATGCCGAGGCTTTTAGACTG 109 36 100.0 29 .................................... CAAACCCATCAACAAATAATCAGTCTATC 44 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================================== ================== 14 36 100.0 33 ATTTTGGTACTCTCTCAACTTTTGGTATGAAGGAAC # Left flank : TACTCTCTCAACTTTTGGTATGAAGGAACAGAAAAAATGAACTTACAAAAAATCATTCA # Right flank : CAGTACAAG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTCAACTTTTGGTATGAAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 52-350 **** Predicted by CRISPRDetect 2.4 *** >NZ_FVTJ01000654.1 Mycobacteroides abscessus subsp. abscessus strain 490, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52 36 100.0 29 .................................... GTTAAGGGCTGTGATAGATGCGTATGATT 117 36 100.0 30 .................................... CGCTAATGCCAGCTAACAAAAGCAAATCTA 183 36 100.0 30 .................................... CTTGCTGATGTAGAGCTTGATAACGATACG 249 36 100.0 30 .................................... AGCTTGTTTTTGGCTTATATACTGTTCTAC 315 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTCCTTCATACCAAAAGTTGAGAGAGTACCAAAAT # Left flank : GTTGAGAGAGTACCAAAATATACCACCTAAGGATTGTTGAAGCGCTGCAGTG # Right flank : CAGACTGGAGCTTAAAAGAAGCTTATGAAGTTCCTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTTCATACCAAAAGTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 32-431 **** Predicted by CRISPRDetect 2.4 *** >NZ_FVTJ01000401.1 Mycobacteroides abscessus subsp. abscessus strain 490, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================== ================== 32 36 100.0 30 .................................... TTGGGTCTACTGTAAATCTTATATCTCTGT 98 36 100.0 30 .................................... GAAGTCGAAGAAGAGTTTTTAAGCGGAATG 164 36 100.0 67 .................................... AAAATGTTTTAGGAACTATGTTCACACTAATTGGAACTGGTCATCTTTAACTTGTCCTAATCATAAA 267 36 100.0 29 .................................... GACCTATAGTGACATGTACAGCTCACTAG 332 36 100.0 28 .................................... TCCAACGTCCATTCTCTCTTAGTATCTG 396 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================================== ================== 6 36 100.0 37 ATTTTGGTACTCTCTCAACTTTTGGTATGAAGGAAC # Left flank : CCAGATGAATCAAGCGCACACATTAAAGCAGA # Right flank : ATCAGATATGCGCGATGTCGAGTTGTGGTAATTTT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTCAACTTTTGGTATGAAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 938-1171 **** Predicted by CRISPRDetect 2.4 *** >NZ_FVTJ01000112.1 Mycobacteroides abscessus subsp. abscessus strain 490, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 938 36 100.0 30 .................................... ATAAAATGGGAAATATAGATCAACGAGTAA 1004 36 100.0 30 .................................... AGCATCTTTCTATAGTCATCCCGCCAAGTA 1070 36 100.0 30 .................................... GAGTCCCTTGCACGCTTTAAATGTTTCACG 1136 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 ATTTTGGTACTCTCTCAACTTTTGGTATGAAGGAAC # Left flank : ATTACTATTGCACTTAAAAGTGATGGAGCGAGTAACTAAACGAAAGATTTTTGGTTTAATTTATCCTGAAAATCAACTGACTAATTCTGAGTTACAACAGTTAGATAATCATTTACAGTCAACTTCTAATAGTTCTCAATACTTTATTGTATCAAATTATCCTTTTAGCGCTGCTCAAAACATTCTTTACAAAAATAGAATTGTTAATATACATTCTTGTGTACTTCAAAAAGATAAACTACAGGATATTCTTCCTATTAATTGGGAAGATCACCTCTTCTCTCAAGCTTGTAATTGGTATATCAATCTTGTGGATAACTTCCAAGAAAAAACGGTTATTTTGAGTCTTCCAACTGTGGATAACTTAGAACAATTTATTTACGTTTATTCACTATTTTTATTAACTGACACTCCTGTAATTGTTGATTTAACAGGAGTTCCAACATCTTTTCTTAATTACTTTGATACCTTGCTAACTGATAAGGTATAATGAAATTGGC # Right flank : CAACAAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTCAACTTTTGGTATGAAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //