Array 1 1237204-1240081 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAEQ01000002.1 Pediococcus damnosus strain VTT E-123216 Scaffold_2_PdamnE16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1237204 36 100.0 30 .................................... GGGGCGGGAGAGATATCAACTGCCCTGTTA 1237270 36 100.0 30 .................................... AGGTATCGTTTGTAATCCTACGAGTGCAAT 1237336 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 1237402 36 100.0 31 .................................... ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA 1237469 36 100.0 31 .................................... CACTTCCACATTTTTGGCACCATCAAACGCA 1237536 36 100.0 30 .................................... CATAAAACATGATAAAGACGTTCAGCATGA 1237602 36 100.0 30 .................................... TATTATATGCAGATCCTAATGTTGAACTAA 1237668 36 100.0 30 .................................... ACGCAAGACCAAATTGATTCTGGCCCAGCA 1237734 36 100.0 30 .................................... ATGGACGTTCATGTATGGCTCATTCTCAAA 1237800 36 100.0 30 .................................... GCCCGTTTGGGTTTGGCCTTGAACATAATC 1237866 36 100.0 30 .................................... TGTATTACAGGGTTTACATTGCCTACGCGG 1237932 36 100.0 30 .................................... AAAAGTTTGTGCTGCCAATGGCAGGAACGT 1237998 36 100.0 30 .................................... CATTAACAATCGCAAACTCACCATTTCCTT 1238064 36 100.0 30 .................................... GTTTGTCCGAACCGTGCGTCATGCACATCT 1238130 36 100.0 30 .................................... TACTCAATCGCAAATTGATTCCGCACCAGA 1238196 36 100.0 30 .................................... CTGACCATAAAGCTGTATCAGCAACCACCA 1238262 36 100.0 31 .................................... TTAATCAATAACAAACAGATGAATACAGGTG 1238329 36 100.0 30 .................................... CGCTGCTAATGCTAATAATATTTCTGGTGC 1238395 36 100.0 30 .................................... ATATCTACCCCTAGTTTATCGTCTTCTCGG 1238461 36 100.0 30 .................................... CGCTTGGGTTCACATACATCACAACGCGGT 1238527 36 100.0 30 .................................... AATGTTTTTGTTTGAGAGACTGCTGCATAT 1238593 36 100.0 30 .................................... TGTTAGGCCTTCCACAGTAAAGCTAATTTT 1238659 36 100.0 30 .................................... ATTCGACTATCCCGGATTGATTGGAGATTC 1238725 36 100.0 30 .................................... CTCGGTACGCAATAACCTTGCCGCCACGTC 1238791 36 100.0 30 .................................... ACCCTTCGATTACTAACCCGCTTAATCTGA 1238857 36 100.0 30 .................................... TATGATGATTGCGTGCAGTAGGTGGTATAC 1238923 36 100.0 30 .................................... AAAACGTTGATTGATAACGGTGTAGCAGAT 1238989 36 97.2 30 ...................................T GGTAAGACTGTTTACAGTCCCTCGATAAGT 1239055 36 100.0 30 .................................... TCATCTCCTCCGATTGCATCTGTATCTAGT 1239121 36 100.0 30 .................................... TGCCGACATTGCCGAGACCCCAACCAGCTT 1239187 36 100.0 30 .................................... TGCCGACATTGCCGAGACCCCAACCAGCTT 1239253 36 100.0 30 .................................... TTAGCTTATGCCAACATTGGTGGTAATGAT 1239319 36 97.2 30 ..............................G..... TTCGCTTTCTGTTGAATAGTAATATGTGTT 1239385 36 100.0 30 .................................... GCCATTGGTGTCTAATGACTGTGGTGCTGT 1239451 36 100.0 30 .................................... CGTGTACATGATGTGGTCGTCCCCAATGTT 1239517 36 100.0 31 .................................... CTAGATACAGGTAATCTGTGGGTATTGTGTG 1239584 36 97.2 30 ................................A... TTCACCTACAATTAATGTATTACCCTTTAA 1239650 36 100.0 30 .................................... TAATAACGGAGCGTTAAAGGCTTGGAGTTA 1239716 36 100.0 30 .................................... CGGGGTCGCTTCCACATATCCTGTGGTCCA 1239782 36 100.0 30 .................................... CCGTTGGTCCGACAACTTCCGCAGCTCTTT 1239848 36 100.0 30 .................................... CCGGTCGTCGTCGGTTAAGTACCACTCATG 1239914 36 100.0 30 .................................... GTGTGGCGTTGGCTAACGTTGTTGAGGGCA 1239980 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 1240046 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.6 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : AGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : ATCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //