Array 1 93772-92829 **** Predicted by CRISPRDetect 2.4 *** >NZ_PURZ01000001.1 Escherichia coli strain GER_MD01_1505_Eco_048 EC-BIM048-48-VE-DEU-2015-033-PK_S62_116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93771 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 93710 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 93649 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 93588 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 93527 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 93466 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 93405 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 93344 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 93283 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 93222 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 93161 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 93101 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 93040 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 92979 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 92918 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 92857 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTGCACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113099-111850 **** Predicted by CRISPRDetect 2.4 *** >NZ_PURZ01000001.1 Escherichia coli strain GER_MD01_1505_Eco_048 EC-BIM048-48-VE-DEU-2015-033-PK_S62_116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113098 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 113037 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 112976 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 112915 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 112854 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 112793 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 112732 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 112671 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 112610 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 112549 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 112488 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 112427 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 112366 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 112305 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 112244 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 112183 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 112122 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 112061 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 112000 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 111939 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 111878 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //