Array 1 431-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIT01000016.1 Lacticaseibacillus rhamnosus strain Lrh11 Lrh11_contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 430 36 100.0 30 .................................... ACAATTACCCCAGATTGACCCAAAACGTCT 364 36 100.0 30 .................................... TGTGTCGATGAGTTGGCTGCAGGCGATTGC 298 36 100.0 30 .................................... GTTTCAATTGATTTGGATATAAATTTGTTT 232 36 100.0 30 .................................... TTGAATAGTGTTATTCAGGGTATGCAAGAC 166 36 100.0 30 .................................... AACTGTTGATACTCTTGAATATAAAGGGGT 100 36 100.0 27 .................................... CTGATTCGCAAATCCGGCGTGGGCTGA 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGATGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAGAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTAAACAAGCTGTTAGATCAGGTTAAGGACACATCGTTAGAATTACTTCTCATTGAATTTTCAGATGTCGAACGTGGAAAGTTTTTTGAGAAATGCCAGTATATCTATATTGACAAAGATTTCATGGATAACCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 19-584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIT01000002.1 Lacticaseibacillus rhamnosus strain Lrh11 Lrh11_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 .................................... ATGCTGGTGATGACACCGACAACCAGAAGG 85 36 100.0 30 .................................... GTCGTTTAAGTTGTTTCGTCGCTCTGAGTT 151 36 100.0 30 .................................... GCCAATTGAATAGGCCAGACAAAAATTGCC 217 36 100.0 30 .................................... TGTATTTTGTACCCCCGTGTTACTTGACGG 283 36 100.0 30 .................................... GACTTGGCGGATCTCGTTGTGCTTATTGCG 349 36 100.0 30 .................................... TGATGGTTTTGCCGTCCGGCTTGACAATCC 415 36 100.0 30 .................................... GGCCAGCGACTGGGTGCAACAATTACTGTT 481 36 100.0 30 .................................... CTTAGAATAGCTTTATTGATTTGGTTATTT 547 36 83.3 0 ....T..................AA.C....T...A | C,G [573,579] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.1 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : TAGTGTCGATTGGCGTGCG # Right flank : ACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCATTGTCAAAAGCAAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 427-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIT01000048.1 Lacticaseibacillus rhamnosus strain Lrh11 Lrh11_contig00048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 426 24 66.7 30 ------------........................ GGGTTATGGGGCGTTAAGCCCATTGATTTA 372 36 100.0 30 .................................... CAAAAATGTCAATGTGTCGATGACCTGGCT 306 36 100.0 30 .................................... TTTGGCTACAAGCATGACCCAACGGCAGGG 240 36 97.2 30 ........C........................... GTGTCCAACTTAATATCTGACCACTTAATA 174 36 100.0 30 .................................... TGTCTCCCACGGAAAAGTGGCACCTAAAAA 108 36 97.2 30 ........................T........... TCTTCTGCCATATCCTGACCCCCTTAAAGA 42 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 94.4 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : | # Right flank : CCACCGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //