Array 1 8763-9647 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGCJ01000062.1 Escherichia coli strain NS-NP018 sequence62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 8763 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 8824 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 8885 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 8946 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 9007 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 9068 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 9129 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 9190 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 9251 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 9312 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 9373 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 9436 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 9497 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 9558 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 9619 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17842-16959 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGCJ01000015.1 Escherichia coli strain NS-NP018 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17841 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 17780 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 17719 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 17658 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 17597 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 17536 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 17475 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 17414 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 17353 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 17292 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 17231 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 17170 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 17109 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 17048 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 16987 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATCACCTTCGGCGCTTACGTCGCCGTCCGTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTATATCTTGTACGCGACTGATCCTGATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCGTAGAGATTCTCGAAACCGATCCGGACGGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGTTGCGCGCACTAAGAAAAACAGGTTCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGAAATCAATCGCCGGTCGTCGCCACGTTACGTGTTCCCCGCGCCAGCGGGGATAAACCGTCATCGAAAACCAGCGGATCGAATGGGACGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGACGGCGCGTAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGGCGACAAAT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18398-17942 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGCJ01000015.1 Escherichia coli strain NS-NP018 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18397 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 18336 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 18275 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 18214 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 18153 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 18092 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 18031 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 17970 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : AGACGGCGCGTAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGGCGACAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCGCGGGCGTGGAATTTAACGAACGGTTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGGGACGCTGCGCGATCTGCATAGCAACGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTATTTTTGCTGACGGATTCTCAGAGAGTTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTCTATCTCCCAGTGGGAGAGAGATGACAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTTGGCGATATCACCTGATGCCTGCAATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTATCGCACTGCGGCAGATGTTCCGGGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //