Array 1 36-1467 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZT01000224.1 Streptomyces alfalfae strain XY25 contig224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36 29 100.0 32 ............................. CCGCTCGACCTCTCGCCCGTGGCCGACCGGCT 97 29 100.0 32 ............................. CCTCACCTCCCGGCCGTAAGGCCAGAAAATAA 158 29 100.0 32 ............................. ACCGCCAGGCCCCGGGCGACGGCCGCGCGGGC 219 29 100.0 32 ............................. GAGTACCCGATGACCGACCCCTCCGAAGAGAC 280 29 100.0 32 ............................. GCGATTCTGGCTCAGGCTGATGCTGACCAGTG 341 29 96.6 32 ..................T.......... TCCGGGTTCAGGATCAGGTTCCGGTCGGTGCT 402 29 100.0 32 ............................. GTCTTCATCTTCGCCAGCCGCTGCTGAATCTT 463 29 100.0 32 ............................. ATGGACAACGTCCTCTTCCTGCCCCGCCCCGT 524 29 100.0 32 ............................. TCGGTCCGGCCGGTGAGAGGGCGCGGGCGAGC 585 29 100.0 32 ............................. ATACACAACTAAGGGTCTTTCTCGTCCTCACT 646 29 100.0 32 ............................. GTCTCGTAGAACGTCTCGGCGATCAGCGGGCC 707 29 100.0 32 ............................. CGGCGTCCGCCGCGTCCGCCGGTCTCGGGGAC 768 29 100.0 32 ............................. CTGCTCTGGCACACGGTGCTCAGCTCGATGTC 829 29 100.0 32 ............................. AACGCGTCGGGCTGCTGGTAGCCGGGCCGGGT 890 29 100.0 32 ............................. TGGAGGACGGCCTGCTCGACCAGGAAGCGGTC 951 29 100.0 32 ............................. GTCGACACGGACGGCTCGGAGCTGGCCGAGCC 1012 29 100.0 32 ............................. TCCTGTTCGGCTGCTACCAGCCGCGCGACCTC 1073 29 96.6 32 .C........................... CAGGTGGCCGCGCCGGACCCGGTCGCTGTTCC 1134 29 100.0 32 ............................. GTGTAACTTCCGCGCGGCCCGAACCCCCAGCC 1195 29 100.0 32 ............................. GTGAACCCCGCCTTCATGCCCGACGATCGCCA 1256 29 100.0 32 ............................. TGCTCTCCGGGGCCGGGCAGGACCGTCTCGGC 1317 29 100.0 32 ............................. AGGATGCCGAGGTCCACGCCGATCACCTCAGC 1378 29 100.0 32 ............................. CGGAGCGGCCCTCTGGCGTGTCCAGTGGTGGG 1439 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCGGCCGCGGAGAAGAACCCTGCGGTTCGCCTTCAG # Right flank : GTCGTAGGTCATGAAGGCAGCGTGGCTCTCGGGGCGGGCGCGGTCTGGGCCAACGGTCCATACGGGGTGTGACCTAGGTCACTCGCTAGTGTTTCCAGATGTCGGGCTCGCCGCCCCGCCAGTCGATGAGCGCGGACCGGACGAGATCACCACGGGCACGCTCGAAGCCATACCGCCAGCCTGATCGCACGCACGAGAAGGCGCACGCTGGGCTACTCCAGCACGCCGAGGTCGCGTCTAGAGCACGGCCAAGATCAACGAAAGAACCCCCGGCCTACAGGAGGCCGGGGGCTGTAGATGGGTTCCGTTTCAGACAACGCGCTTGAAGCGGAGGCAACGGAGGAGCGGGAGGAGCGCCAGACCTGTCATCTCGGGCGGGACCTGCGGAAGCAGATAGATCACGATGCCGGCGATAACGGCGTTGTACGCGTCCTGCCACCCGGGGCGGCGGTATTGGAGTCTCACGGGCTTCCAACGCTGTGATTGCATGGTGTTGTCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2323-2652 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZT01000224.1 Streptomyces alfalfae strain XY25 contig224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2323 29 100.0 32 ............................. GAGTAGGTGTCCGTGAGCGTGGGATGTTCGGC 2384 29 100.0 32 ............................. GCGGACCGCGATGCCTGACCAGATGACCCGTC 2445 29 100.0 31 ............................. GCCAGCCACCCCACCTACGGCAAGGCGACAC 2505 27 86.2 32 ...............--...A..A..... ACGATGAAGGGCGCCACCGGCCCCTTCGCCGA 2564 29 96.6 32 ..........T.................. TAGTTGACGGCGACCAGGAAGGGGATGTCCTC 2625 28 82.8 0 ..........A.T....A.....-....A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCAGACCTGTCATCTCGGGCGGGACCTGCGGAAGCAGATAGATCACGATGCCGGCGATAACGGCGTTGTACGCGTCCTGCCACCCGGGGCGGCGGTATTGGAGTCTCACGGGCTTCCAACGCTGTGATTGCATGGTGTTGTCCTTCGTGCGATTGCTCTCGTGACGTGCGGACACTGCGGGGATCGCCCTGGCAGGGGCGGTCCCCGTCCGCGTTGCCGATGACGGTATGTGGTGGTTGCAGCGGTTGAGGTGGCCAAGGGCGAGCGTCGGCCATGGGGTCAACTCGCCCTGCCACCTGGGGCGTTGGTTGACTTACCCTAATCTTGAGGTAAGGCTATAGAGCGCTGACCTGCGGTTTCCCTCGACCCATCCACGCAGTCCACGTTAAAAGATCTACGATTGACTTAAAGTCGCCCTCTAGACCGAAGCGCCCACCTGCGCGCCGCAGACTGCGCGCGGCCTGCAAGCCGCACAACGCAGAGGCGCAACCAGTAGCCCG # Right flank : ACGGTCGTTTCGTTCCAACCTCGCAATTGATTGAGCTCATGGTCCGAGATCTCACCGGCGAAGCCACCATGAAGTAGTGCGAAACCTGGGCCAGGACCAAACACGAATCAACGGACTGAACGCTCAATTAGAAGCGCTAGGTCTGTCGCTCCTCACTCATCGACCCATCCGTGGGTAAATCGGACTAGCGATCTCAGTGTCACTGCATCGGGCACTCCCTTCGCTTTACGATGCCCTCAGTCGCGCTTCCTTCTGCTTAAATCTTTCTCCAGATACTATTGATCCTCGTGTCAGCCAAGCTGACGCCCTGGAGGGCGAGTGCAAGACGAAGAACGAGACTGGGCATTTTGGAGTCTCCTCGTCGCCATGCTCCAATTAGTGCTAGAAGTTATACGGTAGCTACCAACGAGACTCGCACGAGTCACCACCCCTCCCTTGCCATCGATTCCTTTCTCCGCATAAGCGGAGGTGAGCCGATTTAGGCAGACGGGAGATCTGGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 178455-177206 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZT01000105.1 Streptomyces alfalfae strain XY25 contig105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178454 29 100.0 32 ............................. TCGGGGAAGACGGCTGCGGGGTCGTCTGCGGG 178393 29 100.0 32 ............................. TCGCCACAAGCCTGCAATTCCAGGTGTTCGCG 178332 29 100.0 32 ............................. CTGGCAGGGTAGCGGCGGATGAGATCGGCGAG 178271 29 100.0 32 ............................. ATCTCGACGGCGCCCTTCCACATGCTGGTGAA 178210 29 100.0 32 ............................. CTTTGCTGACCACCGGCCGCTTTGGCTGCTTC 178149 29 100.0 32 ............................. CCCGTCCGCTCCTGCTCCGACAGCCCACCCCA 178088 29 100.0 32 ............................. GCGAAAGTCATCTCCCTGGAGACCGCCATCCG 178027 29 100.0 32 ............................. ACTCCTTCGGGGGCGAGGCCAGGCTAGGGGAC 177966 29 100.0 32 ............................. CTGTTCGAAGCGGTGCCGGGGCATGGTGAGGA 177905 29 100.0 32 ............................. CGTGAACATCATGATGTGACGACCCACCGCCG 177844 29 100.0 32 ............................. CCCGTACGCCTCGCCTCCTGAACTGCCACCCG 177783 29 100.0 32 ............................. CACGAGGATCATGGCGGCGCGTCATGGCCGCC 177722 29 100.0 32 ............................. ACGTACAAGATCGCTTCTCCGTCCGGCAACGA 177661 29 100.0 32 ............................. AACCGTTCGGCCGCGCCGGTACTGCTCATCAG 177600 29 100.0 32 ............................. ACGGCAGGACGGAGCGAAGCCGTGAGCCGACA 177539 29 100.0 32 ............................. CCCCGGCCGGATCGGCTCGGGGCGTGCGGTGA 177478 29 100.0 32 ............................. CCCGGTCAGGACCGAGGAGAGGACTTCTCCCC 177417 29 100.0 32 ............................. GCGATGCCGAGCCAGAACAAGGCCCTGAAGGA 177356 29 100.0 32 ............................. CTTGTCGCTGACCTTGCGCTGCTTCCTCTCGG 177295 29 96.6 32 ............T................ CCGCCCGGATACGCGATCTGGCCGCAGATCTC 177234 29 79.3 0 .G...T....T.........C.....TT. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCGCTGACGTACGCCGGATCCTCGCGAATTGGCTTGTAGAGGAAAGGGACCTGAGCCTGAAACGGAGGAGTGATCTTGCCGATGTCATGCAACCCGGCCCAGAACGAGACCACTGACCGTGCCTCTGCCACGCTCAGGCCGAGCGCATCCGCAATGGCCGCCTTGGTCTCGTCGCTCAGAACGACATCCCACAGCACCTCGAACACCGCACTGGTATCAAGAAGATGGCACACCACCGGATACGGCTGCGACAGCCCGCTCTCCTTGCCCCACAGCCGAACATCCAGAACACAGTCCCCCGAGGCTCCCGCCTCGTCGAGCTTCAGCATGTCCACAGAGGTAGCACGCCCCACTGACAACGGCCCCAAATAGCCCAAGTTGACCCCGGCTTGAGGGGAGGGTCTTACACTCGCTGCGCGATGACAACGAATCGAGACGCATACACAGCGAGGGTCTGCAAAGAGATGGCAAAGCGGTCGAGTAAGACCAGGTCGCGAAGG # Right flank : TCGGCCCCGGCGCCCCCCAGGGTGGCGCAATGCAGAAACGCGCTAGGTGCTTAGAAGGCACGTGCTCTATCCGCTGAGCTACGGGGGCTGACCTGCGTAAACGCAGCTTCCGGGAGTTGTCCCCCAGGTCGCGGGGGAAATATGGGGAATCGCGGATTCCCGGTGACAGGGGGACGCGAGCGCTTCCTGATCGGGCAGTACGTAAGGTCTCACATTATCTTCACGGCCCCCGAAGGCTCTCACGGAAACAATCCCGCACCCCGTCGGCGTTGGTGATCTCCGAGCCGAGGAGGAGAAGGTGTCGGGCCTGAAGCTGTTCCGCACGGACACGACGAATAGCGGCATGACGGAGGTCATGCCGCGTCTTGCTGAGATCGAGGCCGATGTGCAGGGCCTTGTCGAGGCGCACATGGAGACGCTGCTGGGCGTGCGGTTCCTGGCGAGCGAGTACAGCACGGGGCCCGCCCACGGGGGCCGGATCGACTCGCTCGGGCTGGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 188126-189007 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZT01000105.1 Streptomyces alfalfae strain XY25 contig105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188126 29 100.0 31 ............................. CCGTCACCGTCCACGCGACAGGGCAGCGCGA 188186 29 100.0 32 ............................. CCTCAACCCCAAGCGCGGCGTCGGCACCCTCA 188247 29 100.0 32 ............................. ACGTCCGCAGACTCGCCCGGCAGTGCACCGTG 188308 29 100.0 32 ............................. CTCGCCGAGGCCGCGCAGGATCACGACCAGGC 188369 29 100.0 32 ............................. CGGCGCAGGCCGACCCCACCAGCTTTGCACTG 188430 29 100.0 32 ............................. CGTCACCGAGATCCCGTCCATCAGGAGCAGGG 188491 29 100.0 32 ............................. ACCTCCGCGGCATCCACGCCGGCATCGACCTC 188552 29 100.0 32 ............................. CCGACACCATCGCTGCCCGCAACGACGTCCTC 188613 29 100.0 32 ............................. TTCGAGGCGGGCCTGGACGACCTCTCGGAATC 188674 29 100.0 32 ............................. TGACCCCGGGCCCGCCCGGCAGGCGAATGCGC 188735 29 100.0 32 ............................. CAGATCTTCGGGTACTTCCCCACGCCCACCCC 188796 29 100.0 32 ............................. CAGAGCGCTCCCTCTGTCTGGCTCTCACCGCC 188857 29 100.0 32 ............................. TCCTGCTCGATGAGCCGCATGCTCACGGCGGC 188918 29 100.0 32 ............................. CCACCGACGCGGGCCGCTCCTGCGGGAGGTGG 188979 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCCCCGCATAGTCACCGACATCCAGCAACTCCTCGACCCCGACCGCACCTACGGGCCCCCCGACCCCGCGGAACAATTGGTCGACCTCTGGGACCCCGTAGCCGGCTCCGTGCCCGCCGGCATCAACCACGGAAGCCAGCCGTAACCCTGCCCACGGAAGGACACCGGCCATATCCTCGATGATCGTCATCTCAGCCACCGCCGTACCGGACCATCTCCGCGGCGCCCTCACCCGCTGGCTGCTCGAAGTCACACCCGAGCTGTACGTCGGCACCGTCTCCGCCAAGGTCCGTGACGAACTCTGGTCAGCGGTCACCGCCTGCACCGACGACGGCATGGCAGTGCTCGCCCACCCCGCCGACAACGAACAAGGCTTCCAACTGCGAACCGCAGGCGCCCGCCGCCGCGAACCGATCGACTTCGACGGCCTCACTCTGATTGCCTTCCAGCGAGAAGGTCAAGAAATGGCAAACCCCGTCTAACGCGCCAGGTCACGAAGG # Right flank : GCCGCGGAGAAGAACCCTGCGGTTCGCCTTCAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //