Array 1 1009817-1012164 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJYCD010000001.1 Bifidobacterium pseudocatenulatum isolate LH_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1009817 36 100.0 30 .................................... ATCTGGTAGAGGCGGTCGGGGCTGATGTTG 1009883 36 100.0 30 .................................... AGGTCGGAGACGACAAGCTCCCGTTCGTGA 1009949 36 100.0 30 .................................... GCAAAGGAGGACACGAAATGAGCTCCCCAA 1010015 36 100.0 30 .................................... AGGTCGCTTCCGAGGATTTGGATTCCGTCA 1010081 36 100.0 31 .................................... ACATCATCAAAGCAGACATAAACAAGCCAAG 1010148 36 100.0 30 .................................... ACACGACCGGCTGGCAGTATTCGGACGTGA 1010214 36 100.0 31 .................................... TGTAGGACTCGTTGACGCCTCGGAAGGCAAG 1010281 36 100.0 30 .................................... GCGATTCGGGTGAATACGTCGTAGCGTTTA 1010347 36 100.0 30 .................................... TTACGGTCTGGTCGATGTTTTCGCTGATGT 1010413 36 100.0 30 .................................... TCGGCGCTGACTCAACAGACAATGCTAACG 1010479 36 100.0 31 .................................... ACATCGAGGCCATCAAACAGTTGGTGGCCGG 1010546 36 100.0 30 .................................... TTGTCGTAACTTTGTTGGTTTGCCCATGCG 1010612 36 100.0 30 .................................... CACGGCGGAAAATCAACGAATGGACCAAAG 1010678 36 100.0 30 .................................... GCGCACCAAGCGTACGGGAGCTCCCTGCTA 1010744 36 100.0 30 .................................... TTTCCCGCCATTGGATAAAACGGATTATCA 1010810 36 100.0 30 .................................... GGACTCGCAGTACATCACCCACGACGACCT 1010876 36 100.0 30 .................................... ATCAGGCCGTTTGCGAGGTTGAAGGCGTCA 1010942 36 100.0 30 .................................... ACACCTTTTCGTTTCGTTGCATGATAGTAT 1011008 36 100.0 30 .................................... AGCGAAGCGGGCAAGAGGGGCGCGGACCGT 1011074 36 100.0 30 .................................... GGTGTCGTAACGAGGGCGATAAAACATTAT 1011140 36 100.0 30 .................................... TTTAACGCAACGGCAGTTAGCAGATAAAAG 1011206 36 100.0 30 .................................... ATGTTGTCCAAATTCACATCCAACGCGCGG 1011272 36 100.0 30 .................................... TACACGCATGTGGCCATAGTCGCAGGCAAT 1011338 36 100.0 30 .................................... AGGTCGGAGACGACAAGCTCCCGTTCGTGA 1011404 36 100.0 30 .................................... AGGTCGGAGACGACAAGCTCCCGTTCGTGA 1011470 36 100.0 29 .................................... CCTCGATGTGACCGTCCGCGAAAACCTTC 1011535 36 100.0 31 .................................... TCCATTATATCTAGTATGCGATACCGGCCAG 1011602 36 97.2 29 ........................A........... GCAGTAGTATTACCGTCGATATTGACTGA 1011667 36 100.0 30 .................................... ACACGACCGGCTGGCAGTATTCGGACGTGA 1011733 36 100.0 30 .................................... CCGCGCCTCGGAACGTGAAACGGTTCGTGA 1011799 36 100.0 30 .................................... TTGTCGTAACTTTGTTGGTTTGCCCATGCG 1011865 36 100.0 30 .................................... AGGCCATCGACGTTGACTGCAATAGCATGT 1011931 36 100.0 30 .................................... ATATTATCTAAATTTACGTCCAATGCGCGG 1011997 36 100.0 30 .................................... ACCATTCTGAGAGGACTGCCCGGCTCGGGA 1012063 36 100.0 30 .................................... ACATTGAAACCATCAAACAGCTTGTCGCCG 1012129 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.9 30 GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Left flank : CGCATGGTGCGGCCGGGCCGTCTGCCGTATTCGAGGTAGTGATCCACCGCGGCCCGCTACAGCGACGCGCCCTTGCTGGGATAGCCGAGCTCGCGGATCACGTCGGCGGGCGCAGCGCTCGTATTTGACGTACAGGTCCACGGCCCTGTCACGCTGCTCCCTGCTGTACTTCGCCATAAGGGGGTTTTCCTCCCGGTCGGGGAGTCCAAGAAAACGTCATCACCTCGTTCGGACTGGATTGACACGCCATTTTGGACTACTTCAATTTAACAAAACACATTGCGCATGGATAACGTCCTCTTCGCCCCTAAGACGGTCGAGAAAATTCTGATAATCGTTGATACCCATGAGCACGTAGGACAGCGTTCCGTTTGACGACAAGGACCGGCGCACGGTCGGCCTTAGACAGCACCGTAGCGGTGCGTCCATTACTGAGTTCGCCGACTGGCACAAGATCCTCAAGCACAAACTCTGTCAAGGTCACATCCACTTTCCCTCCG # Right flank : CCGATAGCCTTGGAGAATCCTGAACGTTCTATGAGAACTGAACATAATCTCCATCGATATACCGACTTCTTCCCTCTGTCAAAAGGACTTTTTTGTCGCAGCATTCCAGGTCCAGAAGCTGCATATGGTGTCTTAATAATTCTCGATGCAAATAAAGTAATTGGCCATTATCACAATATTGAGTTATATGAAGCATCACAAGCATCCTGCCCTCGGCAAGAGCGCCGGCAGTATCAACTACCAGTTGAATTTTATCATAAAGAGAACCCAGAGAACTGGTATCAACACGCGGTTTAGCCATTGCTATCATTGACTTTATATCAGCTTCATCAAGAATACTCAGAGGCAAATTCTCTCTCCATATTTCTTCTTGAATAATCGACTTTATCTCAGTTTGTAACAACAATAATCTACTCAATTCTTCAGGATTAAATCCGTCATTTAACTTCTTAACTGCAGCCTTTTGAAACAAAGCATCATAATCTAGTACTCCTGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //