Array 1 1897022-1895358 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKS01000124.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSAN332CC SRR2088775.ctg000132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1897021 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 1896960 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 1896899 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1896838 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 1896771 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1896710 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1896649 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1896588 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 1896527 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1896466 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1896405 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1896344 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1896283 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1896222 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1896161 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 1896100 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1896039 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1895978 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1895917 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1895814 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1895753 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1895692 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1895631 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1895570 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1895509 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1895448 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1895387 29 96.6 0 A............................ | A [1895360] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1914406-1913280 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKS01000124.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSAN332CC SRR2088775.ctg000132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1914405 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 1914344 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 1914283 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 1914222 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1914161 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1914100 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1914039 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1913978 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1913917 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1913856 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1913795 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1913734 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1913673 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1913612 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1913551 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1913490 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1913429 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1913368 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1913307 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //