Array 1 5425-2374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJMJ01000103.1 Brachyspira murdochii strain D13-03603F2 contig00108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 5424 31 100.0 37 ............................... TTTTCTAAGTTTCAATATAGTACGAAAAAAGACTGTA 5356 31 100.0 37 ............................... ATTAAAATCCTTTTCGATTTTTTCAAAACTGTTTAAA 5288 31 100.0 37 ............................... ATAGGTGAGTACAAAGGAACTGTATGGATTCTAATAA 5220 31 100.0 36 ............................... AGTTCTCTATAGCAAATAATTATTATATAAGTACAA 5153 31 100.0 37 ............................... GATGTACATAGTCTATTAGTAGATACTTCATTATCTT 5085 31 100.0 36 ............................... CTTTATTAAGTTATATTTAATAAAGTGGGGTATGAG 5018 31 100.0 36 ............................... GAATATATATTTTTTCATTATAAATATTCTGATATA 4951 31 100.0 35 ............................... TAATTCTTGAACCAACATCAAAAAACAAATAAACT 4885 31 100.0 36 ............................... CAATATAAGCAGGAACGCCTGTTGTTCTAGCAAATA 4818 31 100.0 37 ............................... ATGAATAAAGCTGATTTAATCTGCTTTCAATAATTGA 4750 31 100.0 37 ............................... CTGCCAAGCGGACAGAAAAAAAATATAATTCAATTAA 4682 31 100.0 35 ............................... TTTGTAGGCTCAATAGAAACATCTCTACCAACTCC 4616 31 100.0 37 ............................... GTTTATTATCTTCTGTAACATTTAATTTATATGTATC 4548 31 100.0 35 ............................... AAATTAAAAGAAAAATATAGAAACATTGCTTTAGC 4482 31 100.0 36 ............................... CGTCAAATGTTAGCAGCTCGTTGTATAGCAGAAGGC 4415 31 100.0 35 ............................... CTGAAAAGAATATAACTATTTTTGTAATATTATAG 4349 31 100.0 37 ............................... TTTACAGTTAAAGTTTCTCCATTAAAATCAATAGTAT 4281 31 100.0 37 ............................... TTTTTTGTAATATTTTCTATACATTCTGCTATATATT 4213 31 100.0 36 ............................... TTCTTTTCCTAAGCTTTTTGAACATATTAAAAAAGG 4146 31 100.0 36 ............................... AAAGAAATAAAATAACTAGTGAAATGATGAAAATAG 4079 31 100.0 36 ............................... ATATTTAAATCAAGTAAATATCGGCGACCGCTTCGC 4012 31 100.0 36 ............................... GGGTTAATTGATCACGTCTATGGAGGTATTTAATGA 3945 31 100.0 36 ............................... GATATTTTCTATAAATGTCTACACTCTTGAAAAAAA 3878 31 100.0 35 ............................... CATAGAGAACATGTAAATTTTGATATGACTAATGC 3812 31 100.0 35 ............................... TGCGGATTTCAAAAGGCAAGCATACGGATTTATAT 3746 31 100.0 36 ............................... GATTTTACTGATAACAACAACAAACCTTATTTTATT 3679 31 100.0 37 ............................... TTTGGGCTCAATCTGATAATGATAAAAGTGTTGCCAA 3611 31 100.0 35 ............................... TGTTCTAGCTAAGTTTTCTGCTTGTATTTGTCTAG 3545 31 100.0 36 ............................... GGTCTAATTGATCACGTCTATGGAGGTATTTAATGA 3478 31 100.0 37 ............................... TTATGTATAGCTAAAGCAATGTTTCTATATTTTTCTT 3410 31 100.0 36 ............................... ATTGCTGTTGCGGTAACATTGTAGTGAATAAATCTC 3343 31 100.0 34 ............................... TTTATTCTCTCACTTATATCTTTTTAAACTTCTT 3278 31 100.0 37 ............................... CCTTACTTACTTTTATAAAATCTTGTTGCATTTTTTC 3210 31 100.0 38 ............................... CCCGAAACTTTTGAAGGAAGCCCTCCCGTTTGGGCTCA 3141 31 100.0 36 ............................... GAGAGGATCGGAGGTTCTTCATTTAATATACAAATA 3074 31 100.0 37 ............................... CAGAAAGAACATGTAAATTTTGATATGACTAATGCTA 3006 31 100.0 36 ............................... TGTACAAAGAATATAATCTTTCTTTTCTAGTACTGC 2939 31 100.0 36 ............................... AAAGAAAATTATGATATAAATAAAGATGTATATAAT 2872 31 100.0 36 ............................... AATTTTAAGTAAAAAATCGAAAAAACCGCTTATAAA 2805 31 100.0 35 ............................... ATAAAAGTTGCAAAGAAAAGGGGGCTCGTCTGTAA 2739 31 100.0 36 ............................... ATTGGTGCTACTTCAGGTACTATATCGACTGAAAAT 2672 31 100.0 36 ............................... TTTGGTTTATCGAAAAAAAGCAGTTGGTAGTTTTAC 2605 31 96.8 36 .C............................. TGTGGAAAATGTGTTTTTTGTTTACAGCAAAAAGTT 2538 31 100.0 36 ............................... GAATGGACGCCTGATACATCTCTTATACAAGGTAGT 2471 31 100.0 36 ............................... GCTAGAATAATGATTTAATAAATTATAAAATCTAGT 2404 31 93.5 0 .........................A...T. | ========== ====== ====== ====== =============================== ====================================== ================== 46 31 99.8 36 ATTTCTAATCTAACCATACTGGAATGTAAAT # Left flank : TAAACATTTGCTTAATGAAAAAGAATATAAACCTTTTGTAATATGGTGGTGAGAAATAATGTATTTAATATTAGTTTATGATATACAAACAGATGACGAAGATGGTGCTAGAGCTGCAAGAAGAGTTTTTAAGACTTGCAAGGCATATCTTAATCATATACAAAAATCTGTCTTTGAGGGTGAACTCTCAAAAGTACAGTATTTGGAATTAAAAAATAAGCTCTTTGACATTTTAAGAAAAGAAAAAGATTCTTGTATAGTTTTTAAAAGCCGTAATGAAAAATGGCTTGATAAAGAGTTTTTAGTAGAAGAAAGCATTGACAAAACATCTAATTTTATATAAAATAAGTTTATTGTCGAAGTGTAATTGTTATAAAATTGTGCTTAATCGACAGAAGATTTTTGCCAAAAATATATTTATTAACTGTTTTTTAATTATGTATTTGTGTATTTAAGCGAATTAAATATGTAAATTAGAAAAATAGTTTTGGATATACGGA # Right flank : TTATATTAACATGCTTGACTAGCATCATAAATATTATAAAATATTTATAATTAATAAATAAATAATATATACTGCTCTTAAAAATCACATTAATTTTTTATATTGACATAATAAATATATTATAATACAGCCGTAATTATAATTTATGGTATAGAAATGAGCGTTATCCGTTATCTATCTATCATCTATGATACTATTACTCTAACATCATTTTTAAAAAAATACAATAAGGGGTCTGTAAATGATGATAAATTACAACAAAATTAATTTTAAAAAATCATCAACATTATTTATATCTGGACAATATCCAGATGGAAAATTTTACATCATAAACAAAGGTAAAGTAATATTTGAAAGTTATTTTGCTGATAATTTTAAATACGAACATAAAAAAGGTGATATAATAGGAATAGTAAGTGCTGTTATGGACGAGCCATATTTCTCCACTTCTAAAGTAATAGAAGATACTGAAGTAATAGAAATAGATGTAAGAGAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTAATCTAACCATACTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //