Array 1 33569-34204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOJ010000005.1 [Clostridium] symbiosum strain 1001302B_160321_E8 NODE_5_length_106032_cov_31.2248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 33569 33 100.0 34 ................................. TTTATATTCCTTGCGGAGCCGCCGGAAGAATTTC 33636 33 100.0 35 ................................. GCAGAAATATGACCAATGCCGGAATCGCGAAGGCA 33704 33 100.0 34 ................................. AAATGTCAATTTAACTGAATAACTTCATTTGACC 33771 33 100.0 34 ................................. GGCTATATTGCAGAACAGGATTGATTTCTGCGGT 33838 33 100.0 33 ................................. CACCACGTCGGGAGTGACAGCAGCATCAGCAAT 33904 33 100.0 33 ................................. GGTGAAGCGAATAGGAGAAAGTTTTGGAACGAA 33970 33 100.0 35 ................................. ACTTGCTTTTTACACAGTTTCGGAGCATGATAAAG 34038 33 100.0 33 ................................. TGTTTGATTGTGCATCCAAAATACCACGTCTGC 34104 33 100.0 35 ................................. TCCGTATGTATGGTACATATCGCAATCTCCTTCCT 34172 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : GAACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATAGGATTTTATCTTAAGCGGCTTTAAATTAGTTTGAAGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTAGAATTCTTCGAGCGTGACAACACATAATAAACTGCTGGGTACACAGTTAACTGCGACCGCCATTTTAAATGATATTTAGGATCGTACGGGAAAATTTAGCACATAGGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAGCTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TTCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATAAATAAATTTAGAGAGGAAAGAGACTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 34952-36395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOJ010000005.1 [Clostridium] symbiosum strain 1001302B_160321_E8 NODE_5_length_106032_cov_31.2248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 34952 33 100.0 34 ................................. GGAACATGTTCCATACATTCTTCCCATTGCTCTT 35019 33 100.0 35 ................................. CAAAAATCTTAAGATCTGTGGTGTACTTCTGTTTC 35087 33 100.0 35 ................................. ATTATGTGGATAGCTGTGTTAATGGCTGCTACCTG 35155 33 100.0 34 ................................. ACATTCAAAATCGAAATCAAGGAGCGCCTTTCCA 35222 33 100.0 35 ................................. CTGCTATATCTCCAACGCCAACAAGGCGCCTTCCC 35290 33 100.0 34 ................................. CTTTAGTTTTTTGTCGCATATCACGCGACAAATT 35357 33 100.0 34 ................................. CTATTGCACAATTAGTAAATGTTACTGTTGAATC 35424 33 100.0 35 ................................. CAGGAGTTGGCGTATGAAAACTGCCTGCGTATTAA 35492 33 100.0 34 ................................. GTAGGCGTTAGATACGCCCTTAATTGCTGTGGTG 35559 33 100.0 34 ................................. TCTGAACCTTATTATCATATCACTGTAACTTCCT 35626 33 100.0 33 ................................. CGCTGGTTTGCGCATTTTAGTTGTCATAGTTTG 35692 33 100.0 35 ................................. AGGTGAAGAGATTAAGGAAGACCAAGAAGAAAACG 35760 33 100.0 33 ................................. TGGATTTCTTTTATTTTAACATTACAGAACCGT 35826 33 100.0 34 ................................. TGGCGATGATATTCTTAATATCAATATGATTGCC 35893 33 100.0 35 ................................. TCTTTCTGATGCCTGTGTGGGCTTACTGCTGGTAT 35961 33 100.0 35 ................................. TCTTTCCGTCCTTTCCCGACTATGTTCACCCTCCG 36029 33 100.0 33 ................................. CTAGCATTGTTTGTGGCATAAATGAAGTTGTAC 36095 33 100.0 34 ................................. ATTCAAAAAGAGTTCATGAAATATACCAGAAGCT 36162 33 100.0 34 ................................. TATTCAAGGCGTTCCGCCGCGTCAATGGATTATC 36229 33 100.0 34 ................................. TGGATTACGTAACCGTAATACAGAAAAACTTGAC 36296 33 100.0 34 ................................. TTCCGGGAACGTATTGCAAAAAGAGCCCAGAAAG 36363 33 97.0 0 ............................T.... | ========== ====== ====== ====== ================================= =================================== ================== 22 33 99.9 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGAAAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATTCGCTTCACTTATTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTCAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGCAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11201-12665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOJ010000027.1 [Clostridium] symbiosum strain 1001302B_160321_E8 NODE_27_length_58578_cov_26.7986, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================== ================== 11201 32 100.0 36 ................................ ATAATACTCGCACCGGGCCGCGCTTTGCTGAGCGTC 11269 32 100.0 33 ................................ CTATTTCCTTTGTACTCGACGTAATAACGTCTG 11334 32 100.0 34 ................................ TATTTTATATCAAATAAATGGTGATCTGTATAAA 11400 32 100.0 34 ................................ AAGGTTTCCCGGCCGCAGATGACGGTTTGGTCGG 11466 32 96.9 33 ..G............................. CTCTGTATCCGCCTGCTGCCCGAATTGCCCCTC 11531 32 100.0 33 ................................ TACGTGCAGAAGGTAAAAGAATTGACGCTTGGG 11596 32 100.0 83 ................................ AAAACCGCCACGCCTGAACAAAAAGAATTTTCAAAGGTCAGGCTCGTAACAATCAATATCAAAATTAATAAAACGACCAAGCA 11711 32 100.0 34 ................................ CACCACATTAACGGCAGGTCATTATATTGTTGGT 11777 32 100.0 35 ................................ CCGTATTTTGGGCTACGGCCTGCCGGATTGGAGCC 11844 32 100.0 35 ................................ CGCAATACTGCCTTTATCTAGGTAATACCCTTTCG 11911 32 100.0 34 ................................ CTTAAAATTGGGAAAAAGAAATACGCCCCTTGTC 11977 32 100.0 34 ................................ ACTGGATTTTTAATGAGCCACTCAGTCGTTACTT 12043 32 100.0 34 ................................ CCGTATTTTGGGCTACGGCCTGCCAGATTGGAGC 12109 32 100.0 34 ................................ AATTTGGTGGTGATTTTTGCACCCGGCTAATACC 12175 32 100.0 34 ................................ CTGAGCTGTAAAGGAGATCGACCAGCGCAAGTTC 12241 32 100.0 33 ................................ ATTTCCTGCGTGTCGTAAGCACTGGAGCCTTTC 12306 32 100.0 33 ................................ AACGCATTCAGGGCGCTTCGGATAAAAGTAATC 12371 32 100.0 34 ................................ CGTCCAGTTCGGCGGTGCAGCCTGGGCCGAAGTG 12437 32 100.0 33 ................................ CATCTTCAAAAAGAACATTATCTGCATATTTTA 12502 32 100.0 35 ................................ AGAGTAAGCGTGAACGGTACTTTAAACATCCGTGA 12569 32 100.0 33 ................................ TGGCTGGGCAATACGCCGCAGGACCTTTGGCTT 12634 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ =================================================================================== ================== 22 32 99.3 36 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGAATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGATAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //