Array 1 3326794-3325100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNZ010000001.1 Spirosoma agri strain KCTC 52727 seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3326793 30 100.0 37 .............................. ATCGCTGCGTTGAATCGCTCCTGCCACTGTTGCCCGC 3326726 30 100.0 38 .............................. TTGGGGAGTACGTCCGGCCGGGCCAGTGGGGCTATGAT 3326658 30 100.0 38 .............................. CTGCCTTCACTGTTGAATAAATCAACCAGTCGCCAGTA 3326590 30 100.0 36 .............................. TTGATCAGCCCTTTACTGGATCGCATTCGCGAACTG 3326524 30 100.0 36 .............................. ATTTCCATCAGGCCAAACTATCCAAGCGGATGCAAA 3326458 30 100.0 37 .............................. ACTACAGATCCGTTCAGGATGCGAACCCCTGGGAATC 3326391 30 100.0 36 .............................. ACGGTAAGCAGCCCTTGTTCCATCGTTCCTGTGCGG 3326325 30 100.0 35 .............................. TTAGCTGCACTGCGTTCGAAAAACCCTCTACTACT 3326260 30 100.0 35 .............................. CCAGATCCAGTCGTTTTTGATAGAAAAGCGGGGGA 3326195 30 100.0 37 .............................. CCGTAAAGCGCAGGGTAGCCGGTTCTGCGGGGTGCCC 3326128 30 100.0 37 .............................. CCGTAAAGCGCAGGGTAGCCGGTTCTGCGGGGTGCCC 3326061 30 100.0 36 .............................. AAGTAGATCCCGGCTGCGGTCAGGGTGCTACAACGC 3325995 30 100.0 39 .............................. GTATCAACCGGCCGCGCTCCGCATCAATCTATTCGGCTC 3325926 30 100.0 36 .............................. GTTGCAGGAATGATCGTGTTTTTCTGCCCTAAAACC 3325860 30 100.0 38 .............................. ATTGAGCCAATCCTGTATCTTCTTTTTGTTGGTGTCGC 3325792 30 100.0 36 .............................. CTGGCACTATCGCAGGTCACCGTGTCCAGGCTCGCA 3325726 30 100.0 36 .............................. TTGCGGCTCAGGCGGAACGTATATCGGGATTGGAAA 3325660 30 100.0 35 .............................. ACGCTATACCCTGAGTGTAGACGCTCAGCATGAAA 3325595 30 100.0 36 .............................. GAGCTGGCCGAGGATCTGGACAAGATCATGGACCGG 3325529 30 100.0 36 .............................. TTATTTGCCGCAGCCCGGCTCCGATTGCGCTTATCA 3325463 30 100.0 37 .............................. CCATTGCCAAAGACGCCTACGTGAAAGGTGGTGATGA 3325396 30 100.0 37 .............................. CCATTGCCAAAGACGCCTACGTGAAAGGTGGTGATGA 3325329 30 100.0 36 .............................. ATTCCATGTGTTTTGTATCGGTGGTCATGCCGGCCC 3325263 30 96.7 37 ............A................. ATCAATAAATTCATGCAGTAGTGGCTCTAGGATTGCG 3325196 30 100.0 37 .............................. AGTTGTCGAATCATGAGTTTGGTCTCTTCCGAGTCCA 3325129 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.7 37 CTTCTAATCGTACCGTAGTGGAATTGAAAT # Left flank : ACTCTTTCACTCTTTAATTATGTACGTAATTTTAGTGTACGATATGGGGCAGAAGCGGGTCGGCAAGATGCTCAAACTTTGTCGGCGGTATTTGAACTGGATTCAGAACTCCGTTTTTGAGGGTGAGTTAACGGAGGTACAGTTAAAAGAGTTACTTTACGAAGCGGGACGAATCATGAAGGATGATGAGGACAGTCTGATACTTTTCAAAAACCGCGATCAGAAGTGGCTGGAAAAACAGGTTGTGGGAGTGGAGCGGCAGTCGACGGATAATTTTTTGTAGGGGTAAGTGTCGTCAATCGACTTAAATCGTTCTTTGATCAGCTGTAACAAACGCTCATTGGTTAGGAGAAATGGTACTTATGTTGTTGATTATCAGTGTGTCGTCGATCGGCCGGGGTTTTCGTACTATTGCCGGTTGACGACTTTTTAGGTAGATTTAGGAAAAATAAACCGCGTCAGGGCTTCGCAAAGCCCTTTTTTCAGCCGTAAATTGACGG # Right flank : ATTGAAGTTCGAATGCTGCTACAACGCTGGATTGTGCGACCGCTTTGCGTAGCTCACTTGTGATGGGTAAACAGGTGCTTGTCGATAAACACGTCGGCGTATCGCTTGCCCAATGTCTGGGCGGAAGGAGTATCGAAGTGCGTGGAGTCGCCCTTATCGGTTAGGCCGCTTGAAACAATGCAGTACGTATTGGGAACCCGACTAGGAAGTTCCAGCAAAGTATTGTTAATCGTTCCGGCATCCCGGTTTCGGTTGACGACAAAATCGCCCAGGGTTCCCGCCACAAACGGTATCGTAGGCGCATTCAGGTCCTGACGCAACCGCTGGATGAGTTCCGCCAGTTTCGGGCCATACGAACCTACCTTGTCCGGACTTGAGTCGCTCTCACCCTGATGCCAGAGAATACCCGCCAATTCGCCCTGCTCCAGCGCTTTTCTGGCTCGCCGGATGGCATCGTCGTAGGGATAGGATTGGGTTGGTTCGTAATAGGCACCGGGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAATCGTACCGTAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 3498757-3498197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNZ010000001.1 Spirosoma agri strain KCTC 52727 seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3498756 30 96.7 36 ...T.......................... ACAATAGCCTCGAAAGCGCCGAAGCCCGCCATGAAC 3498690 30 100.0 35 .............................. TACTACACGGTGGCTACGAAGAAGAGGAATACGTG 3498625 30 100.0 36 .............................. AAGGCTGCCACCCCTAAGTTACCTGACCTTCGTTAC 3498559 30 100.0 36 .............................. TTTGGCCAGATCCAACCCCCCGTAGCAGGTTTTACC 3498493 30 100.0 36 .............................. AGCGCATGAAAACGAGGATGGATTTCGGGGTAACGA 3498427 30 100.0 38 .............................. TTGCCCCAAAGTAAGGCGTGAGTAAACAGGGTCTTACG 3498359 30 93.3 36 ..............A.T............. TTGTTGATAAAGTCAAGCTGTACAATCGTCTGATCA 3498293 30 93.3 36 ..............A.T............. GCTATACGGAATGTCGTCGGTATCAACCCCCATTGT 3498227 30 93.3 0 ..............A.T............. | A [3498212] ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.4 36 CTTCTAATCGTACCTGAGTGGAATTGAAAT # Left flank : CGAACGTCGGCGGGGGATACGGTGGTGAACGATACTTTGCTTCAGTTTGCGAACGTGGAGTTGCCGTTTGGGGGCGTCAATAACAGCGGGCTTGGCAAATCGAACGGATTTTTTAGCTTTCAGGAGTTTTCGAATCAGCGCGGGATCATGCAGCGCGATTTCGGCACGATGAAGTTCATCTATCCACCCTACACGGACAAGGTGAAGAAACTGATCGACATGGTGATGAAGTATTTTTGAAGACTTGACAGTGAGTTTCGATTAGCTATCAGACAGAACGTGTTACGAACCGCGTCGGTTGCGTATTTTACCCCTAAAATCGTTCTTTGATCCAAAGTATAAAAGGCTTTTTTTGTAGATAATACGCTGACTGGTAGCGTGTCGTCAATCTCATGGGCTTTTTGTATGATTACCGGTCGACGATTTTCGGTTGTTACATAGCCAGCCGAAAAGCCGCACAGCCAGCCCTGCGGAGTCCTTCGTCGGCTTTTAAATAACCC # Right flank : TTGCGGATGCTACAGTCGCTCAATCGCTCTTTCGCTTATTGAAAATGGTGAGTCATGCGACACACAGACCATTTTTTAGTAAAACTTCGTATCATTGATACTGCATGTTACGAAGAGCCCTTTCGACCGCCTTGTTTCTGCTCGTTGTGCCGATGACCAACGCCCAGATCTTACCCATTCTCGACCAAAATCCACCCAGTCTGCACTGGTATCGCCTGACGACGCCCCACTTTCGGGTGCTCTATCCGACGGGGCTGGACTCAACCGCCCAACGAACGGCCCGGCGGCTTGAAAGTCTCTACGAACCCGTCAGCGCATCGCTCGGGAAAAAGCCCCGGCGGATCTCGCTGCTGCTCCAGAACCAGACGACGAACAGCAACGGTTTCGTGACGCTGTTTCCGCGCCGGTCGGAGTTTTTCGCCGTTCCGCCCCAGGACCCCGGTTTGCTGGGGACATTCAACTGGCTCGATCTGCTGGCCGTGCATGAGTACCGGCATGTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAATCGTACCTGAGTGGAATTGAAAT # Alternate repeat : CTTCTAATCGTACCAGTGTGGAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //