Array 1 215519-218585 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSJI01000002.1 Collinsella intestinalis strain AM30-5LB AM30-5LB.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 215519 36 97.2 31 ...A................................ CAGGGTGCGGTAGCCCTTGCGGCGGGCTGGT 215586 36 100.0 29 .................................... CAGCCGTACTCCTGCTTGCGCAGGTATGT 215651 36 100.0 30 .................................... ACAACCAGCGGATCGCATCTACGATTACAG 215717 36 100.0 30 .................................... CGTCCGATTTTCCGTTGGGCTGATTTTCCG 215783 36 100.0 30 .................................... CAACTTCCCATATCGGTGTTCAACACCCAG 215849 36 100.0 30 .................................... CGTCCGATTTTCCGTTGGGCTGATTTTTCG 215915 36 100.0 30 .................................... GATACCTACGGATTGCCGATGGGCATGGTT 215981 36 100.0 30 .................................... GCCTTTGAAACAGCATGTCGGAACGCTCGC 216047 36 100.0 30 .................................... ATGCGTGATTGCTTCGACCTCGGCGCTCTC 216113 36 100.0 30 .................................... CGGTCGCACTCGTCATACACCACATCATCT 216179 36 100.0 29 .................................... AACGAGAAGGCGCGTATGACACGCAATCA 216244 36 100.0 30 .................................... GCCTCGATAACAAGTAACGGCGCTGCCTGA 216310 36 100.0 30 .................................... TGGTGACCGTGTGGTTCCTACGGTCACGAA 216376 36 100.0 29 .................................... ACGCGATCATGACCGTTCCGCGCAATTCC 216441 36 100.0 30 .................................... CAATCGCTGCTCTTGTTGTGTCTATCGCCT 216507 36 100.0 30 .................................... CGCGGCAGAGAGCTTGTTGCGGCGGTCCTG 216573 36 100.0 30 .................................... GCAGGGCGAATCATGGCGAGATATGGCCGA 216639 36 100.0 30 .................................... GGAGGCGCCACAAGTGGTGGCGCGAGTCCG 216705 36 100.0 30 .................................... ACTACAGGGTTTACTTTATAAATAGCCTTT 216771 36 100.0 30 .................................... CCGCTCATCATCGAGCGCATGGCATCCATG 216837 36 100.0 30 .................................... GCAAGGGTCTGCGGATTGTAGAAAGACTCG 216903 36 100.0 30 .................................... TCCCAGATTGCCGTCGTCGCAATCGAGCTC 216969 36 100.0 30 .................................... GCGATGATTGGACGCCAGTCGAGATGCTGA 217035 36 100.0 29 .................................... CTTTGCGCGCCTTCCAGAACCTCGCCAGT 217100 36 100.0 30 .................................... ATTTATAGCTTCAACTGGCCGCGCGTCACA 217166 36 100.0 30 .................................... AGATAAGTTTGTCCAAAGTCCGGTTTTATA 217232 36 100.0 30 .................................... CCGTTCTTGTGGCTGCCGGCGGCGAGGGTG 217298 36 100.0 30 .................................... TGTGCTGCTCACACTGCGGCCATAGAGCGG 217364 36 100.0 30 .................................... AAAAGGCAAGTGGCAGCAATGCCAACCGCC 217430 36 100.0 30 .................................... GCGTTCGCCGATCTGGACGTCGCCGAGATT 217496 36 100.0 30 .................................... TCCTTTTGCTGATAATGCTCCTCCATGAGC 217562 36 100.0 29 .................................... GTAACGCGCGAATGCCGAGGCCGCGTTCA 217627 36 100.0 30 .................................... CCCGTGTAGAAGTAATCGGCGTTGAGCTGC 217693 36 100.0 30 .................................... TCCTCATAATGCTCCTTATATGTCTCGCGC 217759 36 100.0 30 .................................... TGCCGTTACGAAACAATTTGACAGTGGCAG 217825 36 100.0 30 .................................... GCTGGCGGCGACCCTCACGCTTCCTGGCGT 217891 36 100.0 30 .................................... GAAGCTGCCCTGGGCCCTCACGGTGACGGC 217957 36 100.0 30 .................................... CCGGCCAAAAAGTGCTAATTGATGCTAAAT 218023 36 100.0 29 .................................... CCGGCCGCATCTCGCACGACGTCGTAGAA 218088 36 100.0 30 .................................... GTGGCATTCATTACCTCGGGGGTCGGGTCG 218154 36 100.0 30 .................................... GATCGACCGCGTTCCCAAGCAGGAACAGGC 218220 36 100.0 30 .................................... GCGGCCGCTCCCTTCAAAGCGGCTGCGTTG 218286 36 100.0 30 .................................... ATAAGACATGACACCTCGTGGTCGTGATAA 218352 36 100.0 30 .................................... CCGCACCTAGTCGAGCTCGAAGATCTCGGT 218418 36 100.0 30 .................................... CTCGAGCTGAACGTTACGTCGTAAGTCGGT 218484 36 100.0 30 .................................... CCGGCGGTCGTGCGCATGCCCTCAAGCGTC 218550 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 47 36 99.9 30 GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Left flank : GCAGGACCAGTGTGGAGATTACTCCGACAGGAATTCGGCCATCATGACGCCGCCTCGAGAAAGAGACGCGCAGCGTTACCTGCTGAGCGAGGCGGAGCGGTATAATATCCCCAAGAGCGAGACCGCGCAGACCAGGAAGGCCCTTGAGGGCTACCTGCAGAAGTTGAAAGAGGCGGGAATCGATGAAGGTTGAGAGTAGCTGGACGGCGCGAGACATGACCATCCTCAAGCTGACCGAGTGCATCCCGCTGACAGACTGGCGCAAGATGATCGTGGGCGGGGTCGAGTTCAAGCCGTTCCCGGTCATGGACTCGGGTGAGAACATCATAGCCGCTGAGGGCAAGCACGACCTCACCGGCAAGCAGGTCGTGTTCGCATAGCGACCGGATGCATCCATCAAGCAAAGAGAAGCCGCCTCGGGCGGCTTTTTTCGTGCCCGCGTTCCGGGCGACACCTCCGGTACCTTCTCCGCATCGCATGGGAACGCGTAAAAATCCCGC # Right flank : CCATTGGAACAAATTCCTCCCTGCAAAGAAGACAGACGTCCTGACAATTCGTGTCGTTATATCTCGAGAAAGTGCTGGTCAATACGCATCTTGCTCTCATAACCATAGCTTATGTCGCACACCTTATTTTCCAGTAGCAATACCTGCATTTCATGAAAAAAGACTCTGTCTAGGAACTGCTCGAATTCGATTTTGCCCAGAAAAGTTTTCAGATTCACAAACACAAGCACCTTCTCGAGCTGCACATCAGAGACAAAATCTAAGAACATATTCAGCATGTCAATGTACGGAAGATCATCGCCCCTATCAGCCGAAAAACCAAACGATTTCAGGTAGCGACGCATATCCCATTCTACGTTGAATCGGTAATCGCATTCCACCTGATGCGTCAACCGCTGTGAGAATCCTCTCAACTGGCTGCCGTAGTCCTCAAATATTCTTCGAGCTTCCTCGTCCTCGTAGAGAAGCGTCTCCATAATCCCAAGCAGCTTGTTGGAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //