Array 1 173542-171760 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLK01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N50425 N50425_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 173541 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 173480 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 173419 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 173358 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 173297 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 173235 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 173174 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 173113 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 173052 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 172991 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 172930 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 172869 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 172808 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 172747 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 172686 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 172625 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 172564 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 172503 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 172441 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 172338 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 172277 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 172216 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 172155 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 172094 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 172033 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 171972 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 171911 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 171850 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 171789 29 96.6 0 A............................ | A [171762] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191167-189674 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLK01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N50425 N50425_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191166 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 191105 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 191044 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 190983 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 190922 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 190861 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 190800 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 190739 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 190678 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 190617 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 190556 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 190495 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 190434 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 190373 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 190312 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 190251 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 190189 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 190128 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 190067 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 190006 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 189945 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 189884 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 189823 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 189762 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 189701 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //