Array 1 615090-612803 **** Predicted by CRISPRDetect 2.4 *** >NC_023035.1 Salinispira pacifica, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 615089 32 100.0 34 ................................ TTCGATTGCATACGCTATCATCCAGGCAATGGAA 615023 32 100.0 33 ................................ TTTCTCATTGCTTTTTCTGAGCTCATGAAAGTT 614958 32 100.0 37 ................................ TCACCATCGGCGATGCTGTAATTGTAGCTACCGAATC 614889 32 100.0 34 ................................ TAATTTATACAGTCAGGCTCCGTTCGGTTCGTCG 614823 32 100.0 34 ................................ AGCGCACAGGGGCAAGATGGACCGAGTGGCAGGC 614757 32 100.0 34 ................................ AGGTTAAATGCTCATATCAATTCAGATGGCTGTA 614691 32 100.0 35 ................................ AGATCGGGCTGTTGTTCGTCCTGTACTTCTTGCGG 614624 32 100.0 34 ................................ TGACTGTTGTCGAAATATGCGCCCAGGGCGCCAG 614558 32 100.0 34 ................................ ACGGATCGCGACTATATAATCAAGTGACCCATAA 614492 32 100.0 35 ................................ ATAATTACAACTATAATCCAGCATTGACAGAACTG 614425 32 100.0 34 ................................ ATATACGCAGCAATCGGCCTGTTATCTCTCATGA 614359 32 100.0 34 ................................ CGCTATAATGTATGCGGAAACCCACAATGGCCAC 614293 32 100.0 35 ................................ GTCAACCTGTAAGGCCCATGATATAACTTTTTCTA 614226 32 100.0 34 ................................ ATGTGCTTGAGTTTGGTAGTATCGTGGCTCAAGC 614160 32 100.0 34 ................................ GGGAGTTTATCTGGTCGTATTCCTGAATGTAGCC 614094 32 100.0 34 ................................ CTTTGTGACAATTGCACACGCCATTATTGATCGA 614028 32 100.0 34 ................................ AAAGGTGCGCGTCTGGTAAGGCACGCCAGCCTGT 613962 32 100.0 34 ................................ TATTTTTCGGATATTTTCAAGCTCAGCATCGTAA 613896 32 100.0 35 ................................ ATGGAGCCACCAGTCCAAATGCCGTTTTGTATCCT 613829 32 100.0 34 ................................ AGCTGAATCAGCGACGATGCTTGTAAGCGGCTCA 613763 32 100.0 34 ................................ CATAGCTGTAGTTTCCAGTCGTCCGGTACATCCG 613697 32 100.0 35 ................................ TTAAGTCGTCTCTTTCTCTACGGTCCGTGCTTGGG 613630 32 100.0 36 ................................ ATGGCGTTGTGTGTATTTTGTTGAAAGTCCAAATAA 613562 32 100.0 34 ................................ ACCGGCTGACAGTGAGCCGTATACCCGGTTTACT 613496 32 100.0 34 ................................ GACTGTTTTTGTCGGCCAACTCTCAGCCAAGGCC 613430 32 100.0 36 ................................ TGAACTGGCAAGCGGCACAAACTGGGACCTTGTTGC 613362 32 100.0 34 ................................ TTAACTTTCTTTGACAAAATACTTGACAGTTAAA 613296 32 100.0 35 ................................ CAAGCACTCGCCGGGGTTACATCTTCGAAGCTGAT 613229 32 100.0 34 ................................ CTCCGTCAATCCTGATTTTTTTGATCTGCACAAT 613163 32 100.0 34 ................................ GGGTAAGAGCCTCATTATTGCGATGCTGATAAAA 613097 32 100.0 33 ................................ GATGATCAGATTGCAAAGCTGACGGCAGCACTT 613032 32 100.0 34 ................................ TTGAATCATTCCTTAACACTCTTTCTGAGCAGGA 612966 32 100.0 34 ................................ CATTGATTCCGCAACCGCGTCACTAACATCGAAA 612900 32 100.0 34 ................................ CATGTCAGTGTTGATTCCAAAATCACGCCCCACC 612834 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 35 32 100.0 34 ATCGCTCCCCGTGCGGGAGCGCGGATTGAAAC # Left flank : CCGTTTTTTTGGAGGTAAGTATTATGATGGTGCTAATCAGTTATGATGTTGCAGTAACCAGTCCGGGAGGAAAACGAAGGTTAAGAAAAATTGCGAAAGAATGTACAAATTTCGGACAGCGTGTACAATACTCTGTGTTTGAATGTGTCATAGATCCTGGACAATGGGCTCGGCTTAAAAATACTCTCGAAGGTATTATCGATGTAGAGTTGGATAGCCTTCGATATTATTATCTGGGAAAAAACTATCGAAAACGGGTAGAGCATATCGGAGCAAAGGCATCATTTGATGTTGATGACCCACTTATTATTTAAATCCTCTTTTGCGAACGCCAATCATTCAGAAAATCCCGAACCTTTCGCGCATAGAATATTTCCTTGCATTATAAAGATCTTTGACAGAAAAGAGAAGGAATCTATAGTTCCAGGCAACACCAGAAAAATAGGTTCGCGATATAATGCCACTAACATATTATACCATAATGATATATAATGGGGTCT # Right flank : GTCTCGGTGATGAGACTCCCAGGAAAGCCGGTCATCGCTCCCCGTTGTAGAATCCCGAGCTCTATTAACAGCGAATCCCAGGTAATTTACACATGAAATCAGTGGATATTTTATTCTATTCCGCACTCTTCAAAAATCCCTCATCTGTGAACACCCGCGCCAATCCACGGTTCCACAGCATCTAAAATCACCAACTGTTCACCACACCACCCAGCTCCGCCCAGCGAAATCCGGTCCCTTCAACCACACATCCCCCCAAACATCTGGAGGAAATGCAGATATCGTGGTAATATTCACATTCGGAAAACTGATACCCTATTGCCTTGCAGTATTCAGGCGTAGAAAACATTCATGTAAGAGGTTCCTGTGAAAATTGCTTCCAAACTATTGCTGTTAACCTGTATCTTCATCCTGGCCGGACTGGCTTCCGGCTGTAACCCCGAAAAAAGCGCGGAAAAAGAAGTCCATCCGATAGTGGGAGTATGGCATTACCGGCCCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCCCGTGCGGGAGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1084834-1082885 **** Predicted by CRISPRDetect 2.4 *** >NC_023035.1 Salinispira pacifica, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1084833 36 100.0 30 .................................... CAACGGGAAACCTTATATCGTGTGATGTCA 1084767 36 100.0 30 .................................... CGCTGTGGTCTGCTAATAAGCTAATGGAGC 1084701 36 100.0 30 .................................... TACCGCCCTGGCTTCTTTAATTCGTCTATC 1084635 36 100.0 30 .................................... TGCCCCTCTGACCGGATGCGCCCCGGCTGA 1084569 36 100.0 30 .................................... CGGCAGGGCTGTTTAATTTCTATCCACTCT 1084503 36 100.0 30 .................................... ACCCGAAGCAAATAGGGATAGATATTGACA 1084437 36 100.0 30 .................................... TATCTACGAGAATATCACCGGCGGTGTCCA 1084371 36 100.0 30 .................................... TCCGCCGCAGCTTAAGGGCTGAATCCGATT 1084305 36 100.0 30 .................................... TTGAGACCGGAGAAAGCCGAAACGAAGCCG 1084239 36 100.0 30 .................................... TCTGGCCTTTACAGCAAAGAGGAGGTTATG 1084173 36 100.0 30 .................................... TCAAGTTGTTTCCCTGGTCGTTCGGGTCGG 1084107 36 100.0 30 .................................... GAAATGCTGAACAGCTGGTACGAAGAATAT 1084041 36 100.0 30 .................................... GGCCAACCGATTTATGTCTGCTTCGGTTAT 1083975 36 100.0 30 .................................... ACTGACATTATTTATGATATATCAATGCTG 1083909 36 100.0 30 .................................... ACCCATCAGAAAGTAAAAAATTTCTGTTTC 1083843 36 100.0 30 .................................... AAGTGGTGGACATAGTGAATACCGTTGAAA 1083777 36 100.0 30 .................................... AACCGAAAGCGACGATACGATGTTTTCTGC 1083711 36 100.0 30 .................................... GGGATAGGTGTCCCACTTTCAATAAAACGC 1083645 36 100.0 30 .................................... TATCCGCCAGTTGATTGTGTCCTCCTAAAA 1083579 36 100.0 30 .................................... TCAAGACCGGGGAAGGACGGGCTGATGCGC 1083513 36 100.0 30 .................................... CACTCACTCCTGGTTATGATATCGCTGACG 1083447 36 100.0 30 .................................... AATCATGACTTTCCTCTTTTAGAATGGGAT 1083381 36 100.0 30 .................................... AGTACGGCCTGAGCATGGACCTGAAGCATA 1083315 36 97.2 30 .........................T.......... GACTAATAGATTTAATTCTTTTCAGCACAG 1083249 36 100.0 30 .................................... CCACTATAAGAATCATTAGCTATAACAACA 1083183 36 100.0 30 .................................... ACAAACACCCATCGCATGATGTCAACACCG 1083117 36 100.0 30 .................................... ACAAGATCTGCAAATTGATCTGTACTATAA 1083051 36 100.0 30 .................................... AGACTCTTTGGGAATGACCCACTTTCGAGA 1082985 36 100.0 29 .................................... AGGCAACCCGTCTAAGCGCCGCCGGTCGG 1082920 36 94.4 0 .................................T.T | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.7 30 ATTCTACCATTTCAAAGATCTGATTCAAGCCACAAC # Left flank : ATTTCCGATAAACCGTTCACCTGCTTGCGCATATCAGTAACACCTGGACGGACATAAATATCCAGTTGGGACAGATCAGGAATCACCGGAATGCCGCCAAAACTGCTTGCAGACGTTCGGAGGAGATTCTATCCGGCACCATGATGCGAAACCTTCGATCAATCTCTATTACTATATCATTGGAAGAAGCCATGCGCCCCTTCGGTTCAATGTGGACCAGATCCCGATTTGGAGATTCACTGGTCATGGAATTCTTAACCCGCTTCATCCAGTAATGTAGCGTTGAAAGCTTGATTTCGTGATTTCGGCAGAACTCCTTTTGGGTTTGTCCACTTTCCCGCCATTGATCGGTGATAGCCTTCCATTTCTCTACTTTTTTATCCATAATTCCTCCATGTGGAAGAATTATTCCATCTAAAGCTCAGGTTGTGCAGGGCCTGGTAAATTGACGGTTACATTCAAGCCACAACTCAACAGGGTTTATGAAAATAATAACCCCA # Right flank : TAGATATAGCGTTATCATTACTATCTCCTGAACCTGTCATTTCAAAATCTCATCTACGACCCAGCTGATGACCCCACCCCACCGCACCCCGGCGAACAAATTGCGGAAGTTCGAACATCAGCCTCACTCCGGAAAAAGCATCACGTAATAAAAGTAATTTATTATACGTGAGAATCTGTGGGCATGGGTGGTTTCAAACCGCTCCCGCATATGTGCCGCCCCAGCCGGCAGGGGGCGCCCATTCCGGGCGCAGGGCCGGCAGGAGGCGCAGATCCCGGGTGCAGGCGCCGGCTCCCGGGGGGTATGGGCAAGCTCTGGTTTTAAAGGTCCCCGATGGTGGCCACCATCACCGCTTTAATGGTGTGAAGACGGTTTTCCGCCTCGTCGAACACCACAGAGTGCCTGCTTCGGAACACCTCATCGGTCACTTCCATCTCTTTCAGCCCGAATTTCTCGTAAATCTCCTGACCGATCTGAGTTTTGGTATCGTGGAAGGAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTACCATTTCAAAGATCTGATTCAAGCCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1087854-1087226 **** Predicted by CRISPRDetect 2.4 *** >NC_023035.1 Salinispira pacifica, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1087853 36 100.0 30 .................................... GCAAGGCCGGGGAACCTTTCAAAAAGCCAA 1087787 36 100.0 29 .................................... TAGGACCACCTATATAATCATTATAATTA 1087722 36 100.0 29 .................................... GTGTCGTCGTGCTTCCGTCAACGGCAAGG 1087657 36 100.0 30 .................................... TTAACATTAATCGGCATAAATTTCCCCCTT 1087591 36 100.0 30 .................................... GTACCGGAGACATGGGTTTACTGATTCCTG 1087525 36 100.0 30 .................................... GAAGACTCTATTTATGAATACTTTCCAAAA 1087459 36 100.0 30 .................................... TATCTGGGTCTTAATAACTATTACCTCCGC 1087393 36 100.0 30 .................................... TCCTTTCCGGCTACTTTTTTCACCAGATTT 1087327 36 100.0 30 .................................... AAAGAAATGATTGACAGATGGCAAGTAGAG 1087261 36 88.9 0 ..............................GTA.G. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.9 30 ATTCTACCATTTCAAAGATCTGATTCAAGCCACAAC # Left flank : CATTTCACTGACAAAACAATGAAGCCGATGTTTCCAAAATTCAAGAAGCTATAGCCATGGGACATGGGGCAATCAGTGCCTATAGAATTATGTGGATAGTAGTATTCTTTGATTTACCCACGAATACAAAGCAGGAACGGAAAGTGGCCAGTGATTTTCGAAAAGACTTGCTGCGTGATGGATTCACCATGTTTCAGTATTCTGTATATATGAGAGCTTGCACAAGCAATGAATCGGTTGAAGTTCATAAAAGTCGTATTTCGGCAATGTTGCCGGGCTCCGGGCAGGTGAGTATTTTTAGTTTAACCGATAAGCAGTACTCTGCTATCGAAAATTTTACAGGGAAAGCAGCCACGTCCATGCCCCAAACCCCTTCCCAATTGGAGATGTTTTAATGAAAAAAAATGGCAATCACACTAATAAAAATTCAATGCAATTGCCAAAAAAAATGAAATGGATCAGCTTTAATTCTTTGTGCCCAAGTAGTTTGCGAACCATGT # Right flank : GTAAATTTAAGCCTGTAAAATCGACTTCATTTCCAAGAGTTCGTCCTTAATGTTCCAGGGCAGTAATTCTTCCCATTTTCCAGAAAGGGCAATCTCTGGTGCACGGGTGAATACATGAACCAGATAGCCGTAGGGGTTCAAACCATTCTGTCTGGCAGTCTCGATGAGCGAGAACATGAAACAGGAGGATTCTGCCCCCTGTGGGCTCCCGCTGAATAGCCAGTTCTTGCGTCCAAGCACAAAAGGACGAATAGCATTTTCCGAACTGTTGTTGTCCGGGGTGAGCTGAGGATGTTCGAGATATTTCATGATCTTGTCCCACTGCGAGAGCGCATAACTTACTGCCTGACCAGTGGCACTGGTGGGGCGAATGCTCAGGGCTTTCTTGTCGAGCCATGCTTTGAAATCTTTGGCTACCGGTGCAATTCGTGCCTTGCGTTCAGAGATAAATTCTTCATCTAACAGATCAAGGCTACGCAGTTCTTTCTCTATACGGTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTACCATTTCAAAGATCTGATTCAAGCCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //