Array 1 27820-27484 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCXQ01000003.1 Levilactobacillus bambusae strain BS-W1 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27819 29 96.6 32 ............................C AAATGCAAGGTCCTGCATTGTAGTCATCCTCT 27758 29 100.0 32 ............................. TTTCGTGCCCGTTTCTCACCAACCAGAAAGCA 27697 29 96.6 32 ............................C AAGGTCAAAAGTTTGCCACAGCTTATAAAAGA 27636 29 100.0 32 ............................. ATTGAGTCTGATGGGGCGCTCATGCGGCGGTT 27575 29 96.6 32 ............................A GTTAAAAAATCTTGGTCAGCTTCTATCACGGT 27514 29 89.7 0 .............TA...........T.. | GC [27492] ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTATTCCCCATGTACATGGGGATGATCCT # Left flank : TATAATAAGTCGTTATCAACATAAATGCAAGGCTAGATTAAAATGAATTAAATTAATTTGGCCTTAAAGCAAAAAAATATGTTATCATATTATACGAACATGCGTTCTTGAAGGAGGTAGATAACTGTGACGAATTTTAAAACTTTATCGAGCCGTGAACTTTTGGGAGTTGAACGAATGGCAATGGCGGCAATTGCTGAGTCACCGTTAGAACAAGAATACATAAAACGGAAAGTATTGTTAGAAGTTGATTGCGCACCACTACTGGAAGAAGCTCAGCATGAAGCTCATAATGATAAGTATATTAGAGCGCTAGCGACAGAATTGAAAAAGCGGCGGATTTAATTGTAGTTCGAATATAGAAATACGCTTATATAAATATCGTTAAGTAATTCTATTAAATGTTAGAATAGCCTTAAAGCAATATGTACTTCTACCAAACTCATGAAATTTTGAATTATTGCATTTTGTAAACGCTGATTTAACGGGATATATTTAGT # Right flank : GGGATTCAAATGTATTTTGAGTTTTTCGTATGTCATTACATACACTACTAATTTCCATAATTTCAGGTCTTAAAATTCTGCTAAAATTTCCGCGCTAAAGCGCTTCAATAAAAACTTACCCGTTTTTATTGAAGAAAGTTGGCTTATCCCTTCTAAAATCGGATATTGCTTACTTTAAGTTATACACTTATGGTACAGTGTATAAAGAAATTGCTTTGGAAGGGGAAATAGCAAGGATGAAGACGACTGCAATTAACTCTGCTCTGCTCTGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTGCTCTGCTCTGCTCGATTATTATTGTATTTTCGAATTTGTCAACCCTATTTGCTGATTCTTCAACAAAAATCAACAACATTAAAACTGAATCTCGTGGAGTTCAACTGACCGCTTGCCTTTCTTTTGGTGAGCGGCTATTTGACGTGCCT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTACATGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30212-29634 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCXQ01000003.1 Levilactobacillus bambusae strain BS-W1 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 30211 28 100.0 33 ............................ TGAGCGTCACTGGCCCACTGCCAGGCATGCCGC 30150 28 100.0 33 ............................ TGGTATTCAGAATCGTTTGACCTAAGGCGATGA 30089 28 100.0 33 ............................ TAATTCTTGTTCGATTTCTTGTATGGTGATCTT 30028 28 100.0 33 ............................ TACCAACAACATTGCGGAAGCGGCTATATCCAG 29967 28 100.0 33 ............................ CAGAGGCACCATTACGAGCCATCTCAGTCATGG 29906 28 100.0 33 ............................ CGTAGTCACCTACCTTAACTGAAATATCACCAT 29845 28 100.0 33 ............................ TCTCTAAGTAATCCTTCCCATCATTCACGGGTG 29784 28 96.4 33 ..........................T. TGTCAATTTGAGATTGCATGCGGTTAATTAAAT 29723 28 100.0 34 ............................ TGATGGACGAGACACCGAAGCAGTTTTTGATGTG 29661 28 78.6 0 T..........A.........GAAT... | ========== ====== ====== ====== ============================ ================================== ================== 10 28 97.5 33 GTACTCCCCATGTATATGGGGATGATCC # Left flank : AGGTTACTTTGGATCGGGTTATGCCACTTTGGGAAGACCAAATCGCCCCTAAGCTTCTTGACAACAAGAACGTTGTGATTGCTGCCCACGGTAACTCACTCCGGGCCCTTTCAAAGTACATTGAAGGTATCTCAGATGACGATATCATCAACCTTGAAATGGCAACTGGTGAACCCGTTGTGTACACGTTTGATGACAAGTTGAACGTAACGGACAAGACTAAGTTAGGTAAGTAAGTTACTCGCTTAGACCTATAACATGACTTAAATGAAGTGCCCCGTCTCTGTAAGGGAGAGGGGGCACTTTTTGTATGGCGTTTAGAATCTTCAAAATTATGAGTGGGTGTGACCGGCAGCTAAACCGAATCAGGCAAAAATATGTTGACTATTTAGGCTGTTGTTTAACAAATTCATTCCATCCGTTGGTGCGGCTTTGACCAAACTCATGAAAAATGGTAACCTGCTTATATTGAAATGGCGTTAAGTCGGGATTTGTTTAGT # Right flank : AGTGGCAACTTATTTCTGATGAAATTGATTAAGCGTCATAGGCCATTAGTGTCGATAAAAATAGACTAAGCTCAAGTAATGATTATTTGGGCTTAGTCTATTTTTATTGTTATTAGTGGGATATTCAATCAACCATCTAGTTGCTTCAGCATGGTTTCAAGCCACTGCAGGCTGTTAGTCTCCCGTTCAATTGCCCGTTGTAAAATGAGGTAATGACCGAAATTAGCAGTCTGACAGGTCTGATGGTCAAAAAGGGTGGTCATCCGCTGGGTTAAATGTGTCAATTTCGCTTGATGAATTTGTAACTCTTGCGTTAGTAATTGGTAGAGGATCGGACTCGACTGATCCTGAATAAAAAAGACTTTTAGCGGAAATTCATCGTCCGTACTTGGGGTTAAGGGTTCAGTCAGCCAATTTTGTAATTGGTGCTCGCCTGCAGGTAACAGATGGTACCATTTTTGTTTCCTGTCCTGACTGCTGGTTTCTTGTCCAATCCATTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCATGTATATGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 665943-665485 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCXQ01000002.1 Levilactobacillus bambusae strain BS-W1 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 665942 29 100.0 32 ............................. AGCCTGTTTATCTGGAGCCAACTTCAAGTAAT 665881 29 100.0 32 ............................. ATTAGAACGCACGTTGAGTTTGAACTGGACCG 665820 29 100.0 32 ............................. AGTGGTTTCGGTCATGATGAGTCCCTCCTTTA 665759 29 96.6 33 ............................C GCCTTTAAAGAACTAGTGTATGAGGCCATTGAA 665697 29 96.6 32 ............................C GCGTGGTGGGCTTCATCTACGAAGATGATAGC 665636 29 100.0 32 ............................. AACGCTCTCGCTGCTTTTGCGGGCGGTCTGCT 665575 29 93.1 32 ........................G...C GTCAGTGAGTTCAACTCAAATAACCCGCATAG 665514 29 93.1 0 ...........A.......A......... | T [665488] ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.4 32 GTATTCCCCATGCATATGGGGATGATCCT # Left flank : GCGGATCAAGACCAAATTATCTCCATCGGGGCCGTGAAAAGCCTAGGTGATGAAACACAAGAATTTTACCGGCTAATTAAAATTCAGGGTGAGGTTCCGGAAGCGATCAGTCAGCTAACCGGAATTTCAACACCCCAATTAATTGAGCAGGGGGTCGACCTAGCCGATGCCTTACTAGAATTAAAAGAATTTGTGGGTTCGTCTTCGTTGGTTGGTTATAATAGTCGCTTTGATGAACTATTTTTATCGGTTGGATTTAGAGCAACCCATCAACCGGCTTTGTCTCAGTCGATTAAAGATTTAATGCCCCTCGTTAAGAAAACGAATTTATTTTTATCTAATTACCGGTTAGAAACAGTATTGGCTGACTACCAAGTTGTTAATAAAAATCCTCACCATGCTCTTTCAGATGCAGAAGCAACTCTTGCATTAGCAATCAAACTCATGGAAAACGGGACATTATGATTTTTGAAACAGCTTAACCACGGGATTTATTTAGT # Right flank : AGTCGGTTCTAACTGTCCAAACACTGATGACAAAAAAGCTGTACATATCAGGAGTGGAAAGTATGAAAAAAATATCAGTTATCGTAGTTTCACTTACCATAGTGCTTATTTTAGGGGGGTGTGGAAACTCAACCACATCATCAAAAAATGATAGTAGTAGCAAGAAATACAGCGAGGCATCATTATCTAACAAAAAACAGGTCAAAAAGGACTCTAAGAAAAAGAGTAAAGGTGAGTCAGAATCTAAGGCTAAAGAAAGTAGTAAGATGGCAACTAAAGAGGTTACATCTCAAAGTGAAACGGCAAGTAGCACTTCTAGCTCCAGTACTGTCTCATCCAGCACAAGTTCTGATCCATCTAATGGGCCAACAACATTAACAGCATTCCTTAATGAATACGGTGAGTCACCTGCCCTTTATAAGTCAGAACATTACGGTATGTCAATCAAGGATGCCCTAATAGCTACCCCAGACTACCTGGAGACCTCTGGAGAGAAGCAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGCATATGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 676278-675532 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCXQ01000002.1 Levilactobacillus bambusae strain BS-W1 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 676277 28 100.0 33 ............................ CCAGCATTACCACCGCTCTTGAATTGCTCAAGG 676216 28 100.0 34 ............................ CGGAATTATCGATTGCGCTAAGCAGTTTCATGTA 676154 28 100.0 33 ............................ CAAAAAGTTTATCATGCACTGTTGGACAACATG 676093 28 100.0 33 ............................ CAAAGAGGACTACCGCTGGATATGGAAATAAAA 676032 28 100.0 33 ............................ TATCATGAAGCTTTACATACTAATGTTGAGGCA 675971 28 100.0 35 ............................ TGCATTATATCTTGCAATAGCCAGTTGACTTTGTG 675908 28 100.0 33 ............................ TGGTTCGAATAGTGCACATACACTAACGTTTGC 675847 28 100.0 34 ............................ CAGCAGTACACGAGCAAGGCGATCAACAACGCTA 675785 28 100.0 33 ............................ TTTATTCGCTATTTCAAACAAGGCCGATTTTTC 675724 28 100.0 33 ............................ TTCCGGCTATGCCCGGGACGTCATGAACCAGCA 675663 28 96.4 24 ........................C... TGGCCTAGATTTACAAAGAGTTCT Deletion [675612] 675611 28 78.6 23 T..T......AA.T.......T...... TAATTAACACTTAATCTGATATG Deletion [675561] 675560 28 71.4 0 A..T.......A..C.......A.T.TT | G [675537] ========== ====== ====== ====== ============================ =================================== ================== 13 28 95.9 32 GTACTCCCCATGTATATGGGGATGATCC # Left flank : AAAGAAACGTGGGCTGAACGACCAGAAACAATTAACGAAGTGGGTTCCATTTATACCATTCAGGGTTTTGACCTAAACTACGTTGGGGTCATTTTAGGGCCATCAGTAAAATTCAATCCAGCAACCAATCAAATTGAATTGGAGCTGCAGGCGTATCAGGATAGTGAGGCCTTTAAGGGTCGGCAAGATTTAGCTAATGATATTGATTTGGAAAAAGAAAGAATTATTTTAAACTCCATTAATGTTTTGATGAAACGTGGTGTACATGGACTATATATTTATGCCCATGATCCCGCATTAAGAAAGAAACTAAATGATATGAAAAATGATCACTAATATTGTGGAGTGATAGTTTATAAAAATATAGTGTGCTAAAGTATTTAAGGATATAATGTGATCAATGAAAAAGTTGGGCAGTTTGATAAGTTATTAGAAACCAAACTCATGTAAAACTGACCATTGGTATTTTCAAAAGAGCTTAGTGACGGGATTTTTTTAGT # Right flank : GAAAAGTTAATAATAACAAGACCATTTTTACAAATTATGGATGAATCACGGTACGTATTATGGTAAGTTTGTAACGAGTGTAATAAATAAAAGGTTAAGAAGGGGTGGTAATGGTTGGTTACAGACGAAGTGAACGCCCTATGGGCAAAGAAACGCTCCGAAGACGGTGACCAGTTATGGTTACCATTAGTGACTCATTTAAGGGATGCCCAGGCTGTTATTAATCATTTGTATGACCATTGGTTAAGCGATGGGCAACGTCAAGCAATTGCTGGAGATTTATCGGATGAAGATGCCCACCGACTCGTTAAGTTTGTGGGGTTTAGTCATGATTTAGGAAAGGCTACGCCGGCGTTTCAGGTGAAGACGTCTTACAACGGCGACCTATCATTAGACCATGACTTAATGGAAACTTTGGTTCGAAATGGATTCCAGGATTTGGATTGCCTTAATTTATCATCCAGTAATGAATCACCCCACGCTAAAGCAGGTGAAGCTTT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCATGTATATGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //