Array 1 78216-77652 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259218.1 Porphyromonas gingivalis F0570 Scaffold965, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78215 36 100.0 30 .................................... GAATTTCCAGATTATAAAGCGCAGGTTTTT 78149 36 100.0 30 .................................... GGTAGCACATTCCTTGAACAAACCTTTGTA 78083 36 100.0 30 .................................... AGTAATTACTAAAAGTACTAAAGATAGAAT 78017 36 100.0 30 .................................... CACAGGAAAGTTCATATCAAAGCAGAAAGT 77951 36 100.0 30 .................................... AAGACGTGTCGGCGGACGAGCTAATCGACT 77885 36 100.0 30 .................................... AACTAATTAATAAGAAACTAAGCCCTTATC 77819 36 100.0 30 .................................... AACTCAGCAACTCATACAGAGTATAGCGTA 77753 36 100.0 30 .................................... ATCTTATGGCAAGTGATGATAAAGAAGCCC 77687 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATTTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : ACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 93-251 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259210.1 Porphyromonas gingivalis F0570 Scaffold896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 93 29 100.0 36 ............................. CGAATGGAAGACCGAGGGGAACCTGTTGTCGAACGG 158 29 100.0 36 ............................. AAGTAATCTTGAGGCAGGGAGTTGGAGACTTGTCTG 223 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 TTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATACAT # Right flank : TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATCGATTGCGATTGCCCCGATTGCGCGGGGCGTCGAAGTTTTAATTCCTGTATGGTGCAATTGAAATCCGCTCGCGAGAAGTCATTACTGGGTTTCTTCCGATTGTTTTAATTCCTGTATGGTGCAATTGAAATCTGGGCTATCTGTGAGTTATGAGAGGCAATAAACTGCGTTTTAATTCCTGTATGGTGCAATTGAAATCACCCTCGCGGCTATTCCCGCCCGCGCGAACTTGTCGTTTTAATTCCTGTATGGTGCAATTGAAATAGAGCTGCCCGAGGCGGGCGTTTCGCTGATCGAGTTGTTTTAATTCCTGTATGGTGCAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 2 352-712 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259210.1 Porphyromonas gingivalis F0570 Scaffold896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 352 30 96.7 35 N............................. CGATTGCGATTGCCCCGATTGCGCGGGGCGTCGAA 417 30 100.0 37 .............................. CCGCTCGCGAGAAGTCATTACTGGGTTTCTTCCGATT 484 30 100.0 37 .............................. CTGGGCTATCTGTGAGTTATGAGAGGCAATAAACTGC 551 30 100.0 36 .............................. CACCCTCGCGGCTATTCCCGCCCGCGCGAACTTGTC 617 30 100.0 36 .............................. AGAGCTGCCCGAGGCGGGCGTTTCGCTGATCGAGTT 683 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATACATTTTAATTCCTGTATGGTGCAATTGAAATCGAATGGAAGACCGAGGGGAACCTGTTGTCGAACGGTTTTAATTCCTGTATGGTGCAATTGAAATAAGTAATCTTGAGGCAGGGAGTTGGAGACTTGTCTGTTTTAATTCCTGTATGGTGCAATTGAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGAGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 5697-5931 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259168.1 Porphyromonas gingivalis F0570 Scaffold500, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 5697 37 100.0 29 ..................................... CAAATAAAAAAAAATTATTATGAAGAGTT 5763 37 100.0 29 ..................................... GAAAGCAAAACTTCAATTCCGGGAATAGA 5829 37 100.0 29 ..................................... TCAATCGTAGGAATTATGATTAAGGCCGG 5895 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACA # Left flank : CCCCCTCTACGATGGAAACATCGGCTTCACTGCCGTAGCGATCATAAAGTCGGGCGATATGCTCCCGGCTCATCATGAAAGCATCCAGATTCACCGTTTCCGTTCCGCATGCAAGGCGGTGATACTTAGGATCGATATAGTCGGGACCGCATTTGAAAGGCTGCACTTTGAGACCGCGCCTTCGAAGCAATCGTAGCAATCCGAGCGTGAAAGTAGTCTTTCCACCACCCGATGAAGCAGCACTGATAAGGAGATGAGAGCGTTTGATAGGAACAGACAATTATATGAGTTAAAAGAATCGAGATTTACAGACAAAAGCCAAGGAAGAGAACGAAAGGCCTCCCAATCGAATGGATAGCTGCACACAAACACTGTCGGCTACAACCCTCTCCTCCGAACACGATCCCCCTATCCATTTTCCATCACTTTAGCGATCGCTAATTTAGAAATACTTCCCCATCAACAGCACAACTTCCCCTCTTTCTCCTTTCGGAATAATA # Right flank : CGACCCTTTATAAGTCATTGATAGGTTGAGACATATTATTCAAAAGCTTTCCAAAAAATCTATTTTCATGGTCGAGAATCGGAAGAATTTTCCGAATTATCATTTCGTATTTTTTCCATAATGAATCTACCAGAGAACTACCTTCCGGCAGATCTTTGGCAGAAGATCCCTCAATGCTACCGACCTTTGCACTCACATCTCGGTAAATAAGAGGCATTTCTGCAGCGCAGGGAAATTGGTTGTGAGCAGCCTTGTTGCGAATCAGAATCAGGTATTGGCTTTCGTCAGGAGTCAGACAGCCTTTCTTCTCCACCAGCATCTTCACCAGTGTAGAATGCTCTCCGCTCTTACCCTCCCTGCTCGACGACTCGTGCAAATACGGCTTCAAGTCGCGATCAGACATGATGGCTCCTTCGAGTGCAAATGCCCAATCGAAGATTTTGATGCGGCAGCGATCATATTCGCCCAACAAAGTCTTGACTTCATCCAACGTAGCTTTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //