Array 1 881812-881998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013828.1 Acetivibrio thermocellus AD2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 881812 37 100.0 38 ..................................... CCAAAATCAGGCCGTGCATGGGTGAACCAGGAAGCAAA 881887 37 97.3 38 ...............T..................... ATACATAACAGAATTCGCCTCCCAATTTATCATTATAG 881962 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 98.2 38 GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Left flank : CGGTAAAGAGATTGACAGTATAAATAGATTGAGAAACAAAGTTGAGGCAAGAAATAATAGTATTTTTGCTCATGGTTATGAATTTATTAGTAAAGAAAAGTATAATGAATTTAAAAAAGTGGTTGAAGATTATATGAACTTGTTGTGTTCTATAGAAGGAATAGATAAAGAAGAACTGTTTGATTCATGCGAGTTTATAAAGCTATAGCCGAGAGTTAATATGATTAAAGAATAAGGTGTTGAAATTAAAACCAGATTATGTTATGTTTTAATTAAAGTGATAAGTAACATTTTACAAAATGTGGATACAAAATTATTGAGAATTTTGAGTTCATGTTCGTTAAAGCCTTGGAAATAGTGGTATGGAAGCTTATGTTGATAGCAAAAAATTGAATGAAAAATGGTGGATTTTAGGAGAATTTTGATAAAATATGACCAAAAAAGTTCAGTCAAAAAAATCTTGTAAGCATTGACATTTAAGCAATATCACCTCGAGGACT # Right flank : CATATGAGACTCTATTTCAAGCCTTACAGAATCAGAACTTCCACCAATCCATTTTCTGTGCCGTTAAAACAAACCTTGTAAGGAGGTGCCAAATGAAGCTGATTCTGAATACACCCGGACTTTACCTTTGTAAAAGGGAGAGTGCTTTCAGATTCAAAGCGAGAATGAAAAACGGGAAATAGCTGCAACTAAAGTTGACCAAATAATGATAACCATTCATGCAGCTCTTACAACTGATGCAATTGAACTGGCCCTTGAATACAATATTGACATAATATTTTTAAAAAACACGGGACAACCAATGGGGCGTGTATGGCATTCAAAACTTGGAAGTATCAGTACAATTAGAAGAAAACAATTATTCCTCCAGGATAGCCCGCTTGGGCTTCAACTTGTAAAAGAATGGATCTTGGAGAAAATGGATAATCAAATACGGCTGTTAAAGAAACTGGAAGTTAACCGCAGAGATGATGAAAAACGTGCTATAATCAGGGATACCA # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 984693-979303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013828.1 Acetivibrio thermocellus AD2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 984692 30 100.0 37 .............................. TCTTCATCATCGGATATCTTTCTTTCCATTTTTGGAC 984625 30 100.0 37 .............................. TTTGTTATAGAGAGTCATTTAATCAATATTGAATTAG 984558 30 100.0 36 .............................. TGACAGCCCAAACGAAAAACCCAATTGCTACATTCA 984492 30 100.0 36 .............................. TTTTGAAGATAATTTTGGAGAACGGGCTGCAAGAGA 984426 30 100.0 36 .............................. TTTCATTTAGAACTTGATTCGTCATATCATCTCTGA 984360 30 100.0 37 .............................. CCAAGAAAAGCGGCGACAAGATTACTTCGATTAAACC 984293 30 100.0 38 .............................. ATTTTTTCAAGGATGTATTCGATGTCTTCATCTCTTCC 984225 30 100.0 37 .............................. TAGCTTCGCATGAAGTTTGATTGTATCACGCTATTGA 984158 30 100.0 37 .............................. ATATATCTACTTTCTGAAAACCTCCTCACAAAACAAC 984091 30 100.0 37 .............................. TAAGAACTAGTCTATCAGAAATATCACCATTTAAAGA 984024 30 100.0 36 .............................. CAGATGGGATGAATAAGGTCTTTAAATCCTCTTTTA 983958 30 100.0 36 .............................. CAATATATATCAGCATTTTCCAAAATCCAATCCATT 983892 30 100.0 38 .............................. TCTTGATGACTATTTTGGATGGTTTGATCCCGTTGCTT 983824 30 100.0 36 .............................. CACTTTTTGAAAGTATAAATGAGGAGGTATTGAAAG 983758 30 100.0 38 .............................. ATCAGTCTAATACTGGACGTAAATATATAGGTGCTATC 983690 30 100.0 37 .............................. GTATCAACAGTAAATTCCCCATCATACACCTTATTGG 983623 30 100.0 38 .............................. GGGTCATCCCCTGGAAGGGAGAATTCCGCACTTCCAAG 983555 30 100.0 36 .............................. AAATTACTATTGACAGTATAAAAATATATGATACAA 983489 30 100.0 36 .............................. ACTATTACAAAGGCAAAATTGCTTAGAAATGAGGAG 983423 30 100.0 36 .............................. GCATTTGAACATATCATGACCTTCCCCGAGGCAGAA 983357 30 100.0 40 .............................. TCCCTGATTTCAATTCTGCCGATAAGTTCAAATCCAGCCC 983287 30 100.0 38 .............................. ACTCTTCTTCCATCCGAATAGGTAATACAGTCAATTCG 983219 30 100.0 38 .............................. TTTGTCAGTCTGATTTTGATGTTCAAACTGTATTCCCC 983151 30 100.0 36 .............................. CACACGCTTTCCAATCCTTGATTGGTTTTCTTGCCT 983085 30 100.0 38 .............................. CGCTGATATGTGCTGCGACGGCTCATATGTATATGCAG 983017 30 100.0 37 .............................. TTTTGACTGGTCCAGGTTCCACCCATATTATCACTCC 982950 30 100.0 36 .............................. TACCTGATTTTGCAGTATGCGGTAGTCACTATTTCG 982884 30 100.0 36 .............................. TAGTGTCAATGTTCTTCCAAACTTCTTCAGGGAGGT 982818 30 100.0 36 .............................. AGTATTTCCTGCAAGGCTTCTTCTGCATCTACTATA 982752 30 100.0 36 .............................. TAAGCATCATGATGGATAAGGTCGGTACCTTCCCGA 982686 30 100.0 38 .............................. AAGCAGTTTGCCAAATCCTATCACTAAGTTGAGTCACA 982618 30 100.0 36 .............................. TGCTAATTAGCTCGTTGCCGCATAGCGCAATTATCA 982552 30 100.0 38 .............................. TATGTTCACATGGGATACATCGGTATATCCGTGGGTTC 982484 30 100.0 37 .............................. TAGATGAATCAAATAGTTCTACTGAACTTGGAGATAC 982417 30 100.0 36 .............................. TTTCTTTTTCTTGCCATATCCTGGCAATTTCTATAC 982351 30 100.0 41 .............................. ACAAATAATTTTACTATGCGCCAAGTAATTGGATATATCGC 982280 30 100.0 36 .............................. ACCTCCCGGACAAAAACTTATCCGGCGACGGGCCGA 982214 30 100.0 38 .............................. TGGTGTCAGAACATCCCGGGAATTCGGTTTGAAGATTC 982146 30 100.0 37 .............................. TGGCGCCTTGGGCGCCTGTAACCATAATTTCGCAGGA 982079 30 100.0 36 .............................. TCCACCACTGTCCAGAGTAAAAAAAAGTAGAACAGA 982013 30 100.0 36 .............................. CGGCAATCTTCTGTCGCAGTTGGCTGTTACGCGGAA 981947 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 981879 30 100.0 36 .............................. TTGTTCAGCCTCCTTTCTAAGCAATGTAATAATAAA 981813 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 981745 30 100.0 38 .............................. GCATTGGACTGATTCTGCATATCGCTATCAACTCCTTT 981677 30 100.0 37 .............................. AATTGTGGGATAGCACCGGCCTGATCAACCGGTGCGA 981610 30 100.0 37 .............................. GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 981543 30 100.0 37 .............................. GCTTTTAGCTTACTTTCTAATACGTAGCCATAATTCC 981476 30 100.0 36 .............................. TTCCGCCGTTGCCTCGCTTCCGTCCGGAGCTGGCGG 981410 30 100.0 36 .............................. CCGCCCCCGGAATGGGCTTGGGTGTGTCATAAGTAA 981344 30 100.0 38 .............................. ATTCCAGCGATTCGGCCATCGATATGAGCGCCAGGTTG 981276 30 100.0 37 .............................. GGCTTTCCTGCCAAAGTTGTTCCTGCTTCTGCGAAGC 981209 30 100.0 37 .............................. CCACCTGCAGAGTTAGAACCATTTATACGCAGAAAGG 981142 30 100.0 37 .............................. TATTCTGACACATCAATTTGCTTGAGTTCAGTGATTT 981075 30 100.0 37 .............................. TCAACGAGAACGATGTCATCAACAATGTGCGGGCCAG 981008 30 100.0 36 .............................. GCAGTTTCTGATACGTTTCATTGCTGGTCCGAACCG 980942 30 100.0 37 .............................. TTTCAAACCTTACAACTTGTTGCATAACAAATTCTCC 980875 30 100.0 38 .............................. TCTATCGATGCGAGTTCTTCATGCCGTAGTTCCAATGA 980807 30 100.0 36 .............................. AAACAAATTGCAATTATAAAAAAATAGGGAATCACA 980741 30 100.0 35 .............................. TGCGATCAAGTACACTGTTAAGACTATCAGGCTTC 980676 30 100.0 36 .............................. AAATAAATTTGTCGCTGCCTGAGCCAATTTCAACAC 980610 30 100.0 38 .............................. AAGATTTCATTTTTGCAATACCTTATGAAACATTTGGT 980542 30 100.0 36 .............................. ATCTAACAGTCCAGCTGCCTTGAGGTCGCTTATTTT 980476 30 100.0 38 .............................. GGGACGTCAACACTCCGAAAGGCGGCTAGAAGTGGACG 980408 30 100.0 36 .............................. GCCATATATACACCCCCTACAAGTAGCTTGGAGCAA 980342 30 100.0 35 .............................. AGCTTGTCCGCAGGCTTTTCTTCCTTGGGCTCTTC 980277 30 100.0 36 .............................. CATTTCCATCAACCTTAATAAGCACGTCTTCAGGTA 980211 30 100.0 35 .............................. TTGTCAACTAAGCATGCGAACTGCTCCGAGCCATT 980146 30 100.0 37 .............................. CCCAAAACATATTCATCCAAGTTATTCGTGCAGTTTA 980079 30 100.0 36 .............................. GCTGTAGTTACTTCTGTCCCGTTTTCTCTAATACTA 980013 30 100.0 38 .............................. CCGTTTTCATCCTTGAACCTATCAGATACTACAAACTC 979945 30 100.0 37 .............................. AATCCAATAGTAGTGCTAATAGTTCCCCATCCTCCGT 979878 30 100.0 39 .............................. ACATACAAAGGTATATCCCATCTTTTTCACTGTTTCAAA 979809 30 100.0 36 .............................. CAGACGACAGCTTTTTACCTATCCTTTATGAGCTGG 979743 30 100.0 43 .............................. TCGTACTGTAGACGGTGAAATACAAATCATTCCTGAGTTTTTA 979670 30 100.0 36 .............................. CGCAGTAGTCTGCTGTCAGTTCTATCCCTGCTGCGG 979604 30 100.0 37 .............................. ATTTATAAAGGAGAGATTATGTGGCAAAGATAACAGA 979537 30 100.0 41 .............................. TGACAAAGTAAAAGCAATAGCTGATGAGCGTAACTTAACTA 979466 30 100.0 37 .............................. GTGAGTACTTGTGAACAATCACGAGTTTCTCAGGTGT 979399 30 100.0 37 .............................. GTGAATTCCGATGCTGTTTCCCTTTCGGGTAAGTTTT 979332 30 93.3 0 ...........G.............A.... | ========== ====== ====== ====== ============================== =========================================== ================== 81 30 99.9 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CCCCTTTGCAAAAGTTGGAGCCGCTTGTGTGTAAGTTTTGGGCATTGAAAGAAATGTGACAGACAGGATGAGGATAAAGATAACAGTAAGTTTTGTAATTTTCGATAACATAGAGCCCCCCTATATTTACATCTTTTGATTTTTGGATTATCATATGTACAAATTTATTGTATCATAAATTGGAGGTTCTATAAATTGTATGTAATATAAACAAAAGAAATAATTATTTGATTGTGTGACTGTATTTAGATGCTGTTGGCTCATAAGTTCCTATTGATATCAAGTATTCAAACTTTCTGCCTGGAGATTTTGCTGTTGTACATGGTTTTTATGTTCGTCGATGTGGAGTAGTGCAAAAAAGCCGGGGGATCGACAAAATTTATTAATGTGCCTCAAATGCTGATTTATAGGTCTCTTGAGAGAGTTTTTTTGTTCTGATTGTTGATTTTTGTTTTATATAGAGTTAAAATATAAAGCAGAAGTTTAGCGAGTTCTATGGG # Right flank : ACAATAGATACCGTCCCCGTGCTAATTTCATCATAGTTTTGTTGTGCCTATAATATAAATTGAAATTAATGCAAATATTGACATATCCTATAACTATTTATTTTTTCATGCCTATAAACTAAATCAATAACATTATAGGTACTCCGAAAAAAAATCTATTGACTTTTTGATATCCCAATGTTATCCTCACATTAGCCCAAAAAATCTTTGAAAGAAGGTGCTCCAACATTTACGCTCTTTTTATAGTGTTAAACGAAGTTGATTATCTTGATGATATTCTGGCCAAATTTGTTGACGTGGGAGTAAGCGGTGCAACAATTTTGCACAGCCAGGGAATGGCAAGCGCCATCGTCAACAGTGAAAATAACAAAATCTCACTCTTTAGCGCTTTAAAAAGCATTATAGAAAATATTCGTCCATATAACAAAACCATCTTTACAGTTTTGGAAAGCGAAGAATTGGTGGAAAAAGCCGTATCCGCCGTTCAAAGTGTGATAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1920317-1918409 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013828.1 Acetivibrio thermocellus AD2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 1920316 30 100.0 38 .............................. GATAAAAAATGTTGGTGGTCTTTGATGGCCACCAAGTG 1920248 30 100.0 36 .............................. TAAATTACTGCAATATCTCTGATATACCTGAAGCTC 1920182 30 100.0 39 .............................. TTGAAAACATTGTACAGGCAATCGCGCGTGACTGTCTAG 1920113 30 100.0 36 .............................. TTGCCGGCACTGTCGGTAAGATCCCATTCTGCCGGA 1920047 30 96.7 36 .............................A TTCTTCCCCCTTCCTGCTCAGCACTTCAATAGCTTC 1919981 30 96.7 37 .............................A GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 1919914 30 96.7 37 .............................A TCCTATTCATAGGTACTGGGAAACCCAGCATGTTTGT 1919847 30 96.7 37 .............................A TTGGTGTTTCCGAGGTCTGCAATTGCGCCAGCAACAG 1919780 30 100.0 40 .............................. TTAAACAAGCTGCCATTGAAGCGGTTGCTGCTTCCAATCC 1919710 30 100.0 36 .............................. AACTTGAAAACATTGGCATTGGAATCAGTGAAATAA 1919644 30 100.0 40 .............................. TATTTTCAGCTTCTTGCTCTGTGTTATACTTACCAAGCCA 1919574 30 96.7 36 ....................A......... GGTTCTAATACATGCATAATCGAAATGTTCGAAGGG 1919508 30 100.0 36 .............................. ACTGCAAGATATGGCTTTCCGTCAACTTCATAATGA 1919442 30 100.0 38 .............................. AAAGCAAAAGCGATTGCAGCTCTTGAAAAAGCAAAAGG 1919374 30 100.0 37 .............................. CGATTGACAGCAGAGAAATAGCAGACATGTTGGAAAT 1919307 30 100.0 37 .............................. TGCGCAAACCGTTTTCCACACAAAAAACCGTTCCGTG 1919240 30 100.0 39 .............................. TCTTTGTTAATCTCTACTCTTCTCAAATCACCGTTCCAG 1919171 30 100.0 37 .............................. CTATTTTTTCATTGGATTGATTCCACAGCCATTCTTC 1919104 30 100.0 35 .............................. TTTGTGTTTTACTCTGGCTTGGTATTCACGGAGTA 1919039 30 100.0 37 .............................. GGGTCGAAGGGCTCATAGTTGCCTTGGAAACCTATGC 1918972 30 100.0 37 .............................. ACAGCAGGATTAAAGAAACATTTATTTTCGTGTTCTC 1918905 30 100.0 37 .............................. TTTCATTCCATCAACATATAAAGATGAAAGCGGTAAA 1918838 30 100.0 36 .............................. TAGAGTATTCCAAACTGCAGAAGTGGGAGGATACAA 1918772 30 100.0 38 .............................. TTTCTCTCTTTTCTGGCAGGTAATCCACTTGGAATATG 1918704 30 100.0 36 .............................. GAGGATTTTTTGAAAATTGGGAGAGTCGCAGGAGAA 1918638 30 96.7 39 .............................C TCCCAAGTATCTGTATCTAACTGATATCCTGCAGGACCT 1918569 30 90.0 100 ..G................A........T. AAGTATCATCTATATAATCAAATCTATTATAACCAGTTTTTATCCTAGATGTAACAAAATGAGACTTAATAACTATGATGCCTTTAGCAATTTCACTTCT A [1918544] 1918438 30 76.7 0 ....C.G.T.C..T.G...T.......... | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 28 30 98.1 40 GTTTGTATCGTACCTATGAGGAATTGAAAT # Left flank : GTAAAGTGGAGAACTTCTCCGACACCATCGGACGAACAAAGGACAGCAGAATCAGGGAACAGCTTGAAAAGAAGCTATCCCAGGCCTTTGATGATAAAGAAAGCTTAGAGAGCGAGAATAAGAAATTTGAACGGGAAATAACGGAATTACGGCAACAAAAGGCCGGGCTGGAAAAAAACATTGAACAGGCTAAAGAAATATATCAGTTATTAAATTCCGCCCAAGGTGAGACAGAGAGAATTGAACTACGCTTGCGCTTGCGCCAGCAGATTCAGAAATCTATTGAATGGATTAAAATTTATCCGCTTCAGGAACCTTATCAGGAAATACAGGAAACCGAAGAACCCGGCATTGTTAAGATTATGAAAAGCAAATATATTGACAAGGTGCGAATTAAGTTTCGGGGAAGCCGAGACCTCCGGGTGCTATACCTAAAGAACCATGCAGAACTGAGCGAATAGCATAAAACCGTTTATAATATTCTGCCATGTTATCACCCT # Right flank : AGGCAGTAAATCTAATTTTATTAATATACAATAATTGCCTTTCTTGTACCTACAATAAAATAGGACAAAGTTTTGCCTTTTGTCTTCATATACTTTATGTCAATACGCTTTTTGAATTTACGACAAATTGTACAATTTACTTCTTAAATTCTATTCTCTGTATCATTCCGTTATAAAAACTAAATGTAAAAGATTAAAAATCAAAATTAAATTTGATTATTATGCATCTTATGGTAATATACTTATGTAACTTTAAGTTGTTAATTGGAAAATAAACTATGTTCGTTACGTTACTAATTTGAAAGGTTTGGTTTGATTCCAAGCTGTGCAAAATGAGATGTTTTGCACATGGTTAAAGGATGTGAGGAAATGTAGGAACGATATGCAAAATTATACAGTATTCTGACATTATCAAAAAATTAAAAAAGATTGCAAAAAAATAGTTTACCTAAAATTGATTATGCTGAAAAGAGGGAGGATTAAAATGAAAAAAAATATTT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1936893-1933649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013828.1 Acetivibrio thermocellus AD2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1936892 30 100.0 36 .............................. TTCTTCAGGAAGTGAGTAAGGGTAATAAGGGGGATA 1936826 30 100.0 37 .............................. TGCTCAGAATATGGCTAGGCATTTACACGTTTGATGG 1936759 30 100.0 36 .............................. TGTTGGATGCCATACGGAGAGGCGCATTGGATTTTG 1936693 30 100.0 37 .............................. ATAATGACATTTATGGTACTGTTGTGGTAATAGACGA 1936626 30 100.0 38 .............................. TAGTGCATCTTTGGAAGACGAATGAAGAATTCAGAGAA 1936558 30 100.0 37 .............................. AACCTCTGTTTTTCGTCGTCCCAGTATTCCTTCCTTG 1936491 30 100.0 36 .............................. GGATAAACATTCAGAACTACTCTTTCAAAATACTCA 1936425 30 100.0 36 .............................. TTAAACCCACTTTTTTGAATTTATGATTATGTATTA 1936359 30 100.0 37 .............................. TCGCCTCTTTGGTATTTCGGGCGTAAACTGCAAAGAC 1936292 30 100.0 37 .............................. ATATTTAGGCTATACTCACCGGCATTCAGTTCCATTA 1936225 30 100.0 39 .............................. CTGGTATTCAATGTTCTTGCAAAATTGTTCCATTCAGAA 1936156 30 100.0 38 .............................. CCGATGACTCTCTTTGGTTGCTTGACGATAGTCAGAAA 1936088 30 100.0 37 .............................. TCATAGAGTATAAATCAGCCAAATCATTCCTAGCACC 1936021 30 100.0 36 .............................. TACTAACGTGTACCGTATAACCGACTATAAAAATCC 1935955 30 100.0 36 .............................. AAGGATAATAGTTGGGTTTTTGTACATAGTGTATGG 1935889 30 100.0 36 .............................. TATACGTAGCTCCCAGAATCTGTTTGAACTCTGTAA 1935823 30 100.0 36 .............................. TAAAACAAACTTCTACTGCCACTGGTCGGATTGTTC 1935757 30 100.0 35 .............................. TAGAAATTGGGATAAGCAGCTTTTAGAATTGCCAT 1935692 30 100.0 36 .............................. ATGTGGAGGTGGCGGTATGATATGTATAGGGCTAGA 1935626 30 100.0 36 .............................. AAAGTTTAAACCCTGGACGTTGTATGTTTGCGCCTG 1935560 30 100.0 39 .............................. AATACCCCAAAATGAAGGTTCAAGTCATTCGAACAACGA 1935491 30 100.0 37 .............................. CCAATTTTGTCTTTGTCCTCGTCAACACCTTGACCAA 1935424 30 100.0 36 .............................. TTAAATGATCCTCCGGTAACACTAGAAGCCGGAACA 1935358 30 100.0 37 .............................. AGCTATACCATATCAATACAGATCTTGCACCGTGATA 1935291 30 100.0 39 .............................. CACTTCCGGGATGGTAGTCAGTGCCATCGGGCTTGACAT 1935222 30 100.0 36 .............................. TCGTTCAGCCTCCCTATGCTACATACCGGATGTAAT 1935156 30 100.0 36 .............................. CCGACTGTTCGACGTAGACGTCGACAGGAGGAAAGA 1935090 30 100.0 38 .............................. TTGCAAGTCAGGTAATGCCTTTTGATACCGGTACCATG 1935022 30 100.0 38 .............................. AAGACACTGAGACTCTTTCTATTAGTATTGATGGAAAC 1934954 30 100.0 36 .............................. TGTAAATAAAGCTATGAAATTGAATGATTATATCAG 1934888 30 100.0 36 .............................. AGCAACAGAGCTACGAGTTAGGAGAAATGCCCGTAG 1934822 30 100.0 37 .............................. ATTGTATTGACTTGAACACTACCAACTGATAATGAAG 1934755 30 100.0 36 .............................. GAGTATAAGGCTAAATGGTATGGCAGAACGTACCAC 1934689 30 100.0 39 .............................. ACATTCAACACCAGCTTTCTGCCCTATGACCAACCTATC 1934620 30 100.0 42 .............................. GCCAACGTTCTAAAAATTCACATACTCTTATTTTTTCTGCTC 1934548 30 100.0 36 .............................. TCCTCAATCTGTTTTTCTGTAAACATCCACTAATAC 1934482 30 100.0 37 .............................. ATCCAAGGATGTTGACCAATGATAGTTTCATGTGATA 1934415 30 100.0 37 .............................. TCAATGACCAAGAGTGAAATTGCGAAAATACTTGCGG 1934348 30 100.0 36 .............................. TGGCCCATACTACATACCACGGTGGCTAGAAAAGGA 1934282 30 100.0 36 .............................. AGAATAGGCACAATCGGAAGTGAACAAGGAGAAATA 1934216 30 100.0 36 .............................. TTGCAGATACTACATCGGCTGGTATATCTTCTGGTG 1934150 30 100.0 38 .............................. TTAGTTTATAGGGAGATATTGAATCTCCCTATAATAAC 1934082 30 100.0 37 .............................. ACAAGGCGGGAATGGGTGAACACTTTACAACTGTATG 1934015 30 100.0 37 .............................. AGTTTCCGGCATCTCATCCCAAGTCCGTTCATCCAAA 1933948 30 100.0 38 .............................. TAAGTTGGGCTTCTAATAGAAGTTCTGGTGCTGTTGGA 1933880 30 100.0 38 .............................. CTTGATTTTGATTTTCAAGCGGATTATGCTTCAAAAAA 1933812 30 100.0 36 .............................. TATTACCATAGCCAAGCGGCGGTAAATATCTCACAT 1933746 30 96.7 38 .............................T TGTAATAGCATCGACAATAATGTTGTCTTGATTCAGTC 1933678 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ========================================== ================== 49 30 99.9 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TAAAAAACGGTGTAACACTTTTTTAATTGTTTGAATACTATGATACCGTGAAGCAAAACAAAATAGGAAAGGATGAGAGGTATGGAGGAGAATAGAGGTTTTGGCTGCTTTTATGGTAATGACATTATTTGGTTGATAATTATAATTTTGTTTATTCTGTGCTTGTGTCCGGGAATTTTCGGCGGTTTTGGCGGATGCGGCTATAAGAATTGACCGACTGCATGTACATAAGAATCTAAAGAGGGGAGGTAATTGCCTCCCCTTTTTGTTATAATAGGGATATGCGGGGAATTAACTGAGTTGATGGGAGTAATTTTATTTATAAGTTTATGGTTTGTCGATGTGGAGTAGTGTAAAAAACCCGGGAGATCGACAAAGTTTGTTGATGTCTTTTAAATGCAGGATTATGAATAGTTTGAGTGATTTTTTTTATTTTTGTTATTGATTTTTATTTTATATGTTATTAAAATAAAAAGTAGGAATTATGCAGGTTCTATGGG # Right flank : TTCTGGCTACTCCAAGTTCCTAATGTTATATATGGTTTTATAGTATAAAGCCTTAAGCGAAAATGAATAGGACTGTATAATAAGGTTAAGGCTTTATATTCGCCTGAAGCGTAAAAACGCAATAGGAAGAATAAAATTTTTGCCGGGGATAGGCCAGCCTTGCAAACTGGCTGACAAGCGAAGTCTCCCCGCTTCCCCGGCAACAATTTCAAATAGGGAGACAGAAAGGGAGACGAAATATGGAATCTATGAAAGGGAAAGTCATTCGGGACATTAGGAACCAGGAAGCAAAAAGAAAGCAACTCCAAAAGGAGATCTTCAACCAGCGGTACAATGCTACGAAAGAGGCGAAGTTCATAGACAAGGAGGATATAAATATGAATAGCTTCCGGGCTATTCCTAAAAGCGTGATACAAGAGCTAGGCTTATCGAAAGCGGCCCTGGCTATCTATCCTGTCTTATGTGCAAAAGCAGATTTTGAAAAAAATAACTCTTTTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3475183-3473346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013828.1 Acetivibrio thermocellus AD2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3475182 30 100.0 37 .............................. TCCTGGACGGTCTGGTCCAGGCTGGGGTGCTCCCGGG 3475115 30 100.0 37 .............................. TACCACCCACCCTTGAGGAAGTAAGAGCCTACTGCCA 3475048 30 100.0 35 .............................. TCCGGCTCGCCGCTCATGCAGTCAAGGGCAAGGAC 3474983 30 100.0 40 .............................. ACGTAACAAAAAAATCGAAATCATTGCAAATTGCATACTC 3474913 30 100.0 38 .............................. AGGAACTCCTGAAAGTACCCCTCAGAGGGTACAAACGC 3474845 30 100.0 40 .............................. GCTCTAAAACCTTCATACCATCATCCTTTCTTGACACCTC 3474775 30 100.0 38 .............................. TGATATTGTGCCATGAAATTTTGTTCAGGAAGTGCGTC 3474707 30 100.0 36 .............................. AAATTAAATGTGAAGCATCCAATGTCAATCTTTGTT 3474641 30 100.0 35 .............................. GTGCTTCAAGTTGTTCATCCCTGGTTTTAATATCC 3474576 30 100.0 36 .............................. TTAATTCAGTGCATACACAGCTTACCCAATGCATTA 3474510 30 100.0 31 .............................. ATCCAATCCAATCCAATCCGAATCCAATCCT 3474449 30 100.0 35 .............................. ATGTGAATCCGGAGGCGGGGGTTATAGCTACCCTG 3474384 30 100.0 36 .............................. TTGTGCGCTCGCTAGCACCTGTTTTTTCGTTCTTAT 3474318 30 100.0 36 .............................. AAATGCAAGTCGATACTATAACAGCAATTGAACAGA 3474252 30 100.0 39 .............................. TGCTGACTATATCAGAAAATGAACTTGAATCACAAGCAC 3474183 30 100.0 38 .............................. AATTTGGAGGGACGAAACTGTCAGACCCATCAATATTA 3474115 30 100.0 39 .............................. CACATTATATCTCAACTCCTAATTTCTCAATTTGTTCTT 3474046 30 100.0 36 .............................. ATATGGCAAACAATTTGATAACATCCTTTTCAGTCA 3473980 30 100.0 40 .............................. TATTTCCATCTACTTCAAGCATTGGTACAGATTTAAACCC 3473910 30 100.0 38 .............................. TGTTCCTGCGTGGAAAGGGAACAAAACATCAGGCTCAC 3473842 30 100.0 35 .............................. CTCCTATAGATTCTTCCTTTGGTTGGAGGCTTCTA 3473777 30 100.0 38 .............................. ATAGTGAAAACTTTCATTGCTTTCATACAAATCCCTCC 3473709 30 100.0 36 .............................. TTTTAATAATTTTTTCCCATCCTGCATGCACAAATT 3473643 30 96.7 35 .....................G........ AGGTCTAACCAGAACAGTATAACAAGGCTTATCTC 3473578 30 100.0 39 .............................. ATTCTATACCTATCGCATTTCTATTGTTTTTTATAGCAA 3473509 30 100.0 36 .............................. GATGGTGCGGATTTGAAGGATGTGCCGTTCAAATAC 3473443 30 96.7 38 ..............A............... TAAATTTTCAGGCAACTGTTTTCAAAAGCTTTGATAAA 3473375 30 83.3 0 C.........C.T......C.....A.... | ========== ====== ====== ====== ============================== ======================================== ================== 28 30 99.2 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CTTGAGAAACATCTTATGGGAGAGCAGGAATATAAACCATACGTTGCTTCATGGTAAGGAGGATGTTTAAATGTTTGTGATTATGGTTTATGATGCAGGAGAGAGAAGAAACAGTAAGGTTTTAAAGGTGGGAAGAAAGTACCTTCATTGGGTTCAAAATTCTGTATTTGAGGGTGAGTTGACGGAAGCAAACTATCATAAGCTTAAGGAAGAGGTAAGACGCAAAGTAGACAACGAAGAGGATTCAGTTATATTTTACAAATTCAGAACGATGAAGTATACTGAAAGAGAGGTTATTGGAAAGAATGTTGATCCCAATAATTTTATCCTATGAATTTGTCGATGTGGAGTAGTGCAAAAAACCCGGGGGATCGACGAAATTTATTAATTCCCTTTAAACGCTGATTTGTAGCTGTTTAGAGGGATTTTTTGTTTTTTTGTATTGATTTTTATTTTGCAATTGGTTAAAATAAAAAGCAGAAGTTTAGCAGGCTTTATGG # Right flank : CGTTTATTCTTTCCCTCTTCGTCAACTTTCAATATCCGTGTTTTTTTTACCCGTTAAGGATTGAACCTTTTGTTATCGTATAACATATAATCTTAAAATTTTCTCAAATGGCAATAGTAACCTCGCATGTATTAATAAATATACATTGCAATAATTAGCATTTTGGCATCGACATATTATCACGTATTTAATAATATGTAAGACGAAATTTACTTAAATTATGGGAACTTCCAGAGGTGAAATACATTTGCTGTTGAGGTCGGTTAAAACTCAGTTTAGATTAATGGTCAACAAACGTAATTTTTGGGTTGCCATCTTCCTGGGACTGTTTTACTGTATAATAAGTTATGCCCATTCGCTATATATTTATCGGGGATATGATGTTTCGGGAACTCTTAATGCAGCGTCGCTTTTTATTGGAAACGCCGATACGGCGCTTTTTGAAAAGTATTTTCTAATTTATGTTTCCGTTTGTGGTGATTTTACCATTTTCATTTTCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //