Array 1 3036392-3034329 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033243.1 Acinetobacter baumannii strain 7835 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3036391 28 100.0 32 ............................ AATCCAAAGGTGGGCGGGTCTTATCTTTAATA 3036331 28 100.0 32 ............................ ACTGAGGAAGGGAAGGATATCATGCGCGAGGC 3036271 28 100.0 32 ............................ ATAAAAGAATTGCTCTTGGCTTTTATTACGCT 3036211 28 100.0 32 ............................ AATACCTCTAGCCAAGGCGGTTGGAGTGCCCC 3036151 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 3036091 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 3036031 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 3035971 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 3035911 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 3035851 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 3035791 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 3035731 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 3035671 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 3035611 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 3035551 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 3035491 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 3035431 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 3035371 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 3035311 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 3035251 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 3035191 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 3035131 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 3035071 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 3035011 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 3034951 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 3034891 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 3034831 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 3034771 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 3034711 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 3034651 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 3034591 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 3034531 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 3034476 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3034416 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3034355 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 98.4 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3041482-3045412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033243.1 Acinetobacter baumannii strain 7835 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3041482 29 86.2 31 ....G.......CC..............G ATCGTAATCATGCCGTGATAGATACCGCCTT 3041542 29 86.2 31 ....G.......CC..............G CACCCGTGGGGATAGATATCGATCAAGTACG 3041602 29 86.2 31 ....G.......CC..............A ACTTCGAGCGCTTGTTCGTACGTTTGGATAT 3041662 29 86.2 31 ....G.......CC..............A TTTTATACGTACCTCACAATTACGCCAATCC 3041722 29 86.2 31 ....G.......CC..............A CTTTGCAAAGCTGCAAAAGCTTCAACATTAT 3041782 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 3041842 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 3041902 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 3041962 29 89.7 31 ....G.......CC............... TCCGCAATACAAATCACTGGATCAGCCAGGT 3042022 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 3042082 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 3042144 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 3042204 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 3042264 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 3042324 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 3042384 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 3042444 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 3042504 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 3042564 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 3042624 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 3042684 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 3042744 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 3042804 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 3042864 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 3042924 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 3042984 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 3043044 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 3043104 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 3043164 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 3043224 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 3043284 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 3043344 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 3043404 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 3043464 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 3043524 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 3043584 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 3043644 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 3043704 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 3043764 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 3043824 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 3043884 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 3043944 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 3044004 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 3044064 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 3044124 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 3044184 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 3044244 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 3044304 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 3044364 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 3044424 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 3044484 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 3044544 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 3044604 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 3044664 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3044724 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 3044784 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 3044844 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 3044904 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 3044964 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 3045024 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 3045084 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3045144 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 3045204 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 3045264 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 3045324 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 3045384 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 66 29 93.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //