Array 1 214310-213923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAU010000001.1 Pectobacterium brasiliense strain IPO:3630 IPO3630_001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 214309 28 100.0 32 ............................ AGTTCGCACGCAGGGCATTCAATCCCCGCGAC 214249 28 100.0 32 ............................ TGATTCAGCGCTGCTTTTTGCGGCGTGATGTT 214189 28 100.0 32 ............................ TCGCTATGCAACTAACTGCTGAGTAACTGGCA 214129 28 96.4 32 ............G............... ACGAACTACGCCCAGACCTTTACCCAAACCCG 214069 28 92.9 32 ...........C.C.............. AGCCAGTCAACATATCGTACACCAAACATGTT 214009 28 96.4 31 ...........C................ GGCTTATGACAGGGCAGCGAAAGAGCCTGGT 213950 28 75.0 0 C............C........CG.TGC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGGTTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGCGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGCCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTATAGAACATGGTCCGCTACAGAATGCTCCTAGCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGAGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAACGG # Right flank : TTATCGAGATGCGTCGCTGGCGCGACGCATTCTTGAGGGCTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGAGCGTTAGACTGTTACCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCAGGCACTAAACGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGTGGTCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACTAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCGCCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGCC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 222884-223996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAU010000001.1 Pectobacterium brasiliense strain IPO:3630 IPO3630_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 222884 28 100.0 32 ............................ TGATGACCTGGTGGATTCCACTACGTTCAAAG 222944 28 100.0 32 ............................ ATCGCGCACCGTCGCTTGGCGAGTTCTCGACG 223004 28 100.0 32 ............................ AAGATGGACGATCTGGAATTTAACGACCTCTA 223064 28 100.0 32 ............................ CTGCCGCGTAAACAAACAGGTTCTTAAATGCC 223124 28 100.0 32 ............................ AGAAAAATAAAGCAGCGGAGCTAGAATAATAA 223184 28 100.0 32 ............................ TTAGTCAAGAAATCAGATACATTCAAATTTAA 223244 28 100.0 31 ............................ GTGCGCCCATCGACCGCTTATGAGTCCCTGG 223303 28 100.0 33 ............................ TGCGCGATACGCTGACGCAAGAGGCGGCTTATT 223364 28 96.4 32 ...........G................ CAGTGGTAATAATTGCCATCAGCTTCGTACTT 223424 28 96.4 33 ...........G................ ATAGCGGGTAGCCGTAGTTTCTATAATGATTAA 223485 28 96.4 33 ...........G................ CAGAGCAAATAAGCCACATACCACTTGAACTAT 223546 28 96.4 32 ...........T................ AGCGTGTCCCGCCTGATTAATGAGGAATGGTG 223606 28 92.9 32 ...........T.....T.......... GGCTCGCTCTAACATTTGTGTGAAGAGTGTCG 223666 28 96.4 32 ...........G................ ACATCGCGTTATGTGATCCGGCTCGAGCTGGT 223726 28 92.9 32 .........T...C.............. GCGTGGCGTTCTACGGCTACAACAACGGCGCG 223786 28 96.4 35 .............C.............. AATACGCCAGACTCATTACAACACCACAGACGCGG 223849 28 100.0 32 ............................ CGCTATAAATTGCATGTGCACCGCATTTCTGA 223909 28 96.4 32 ...........G................ TCCGCTCTGTAGTCTGCGAATTAGAAGCACAG 223969 28 78.6 0 ...........T.C......T...TCC. | ========== ====== ====== ====== ============================ =================================== ================== 19 28 96.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCGTTACAGAAGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGACTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : ACGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAGCACCATCGTCAGAGTTTGATGTGTTATCGTCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACCTTTTTAAGTAACGGGTTTCTTTGTTGGGAATGAAAAATTGCGTATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCGAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACTGATCCTG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 231117-229888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAU010000001.1 Pectobacterium brasiliense strain IPO:3630 IPO3630_001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 231116 28 100.0 32 ............................ TCATCGGTTTTCCTGCGACCGCTCGCCTGCTG 231056 28 100.0 32 ............................ GATGACCATTTCACTGCTGCACAGTTAACAGT 230996 28 100.0 32 ............................ GCGCAGGCCTCCCATGCTTTAAACGGGCGATC 230936 28 100.0 32 ............................ CAAGAGGACACTATGGACGAATTATTAGAGCG 230876 28 100.0 32 ............................ GCAATAAACGGAATGAGCATGTTGTAACCCAT 230816 28 100.0 32 ............................ AGTCAGGAACTGTACTCCAGCCATCGTCGCGA 230756 28 100.0 32 ............................ TTTTGGCTCGGTGTCTCCATTTTCCCATTTAA 230696 28 100.0 32 ............................ TCGTCGTAAATGCAAAATCTGTGGTGAGAAGT 230636 28 100.0 32 ............................ ATCACACTCAATATCATTCAGGCGGATGTGCG 230576 28 100.0 32 ............................ TTGAATTAGGCCGTCAGATTGAACACCGAAGG 230516 28 100.0 32 ............................ CTCAACTGACGGAGGTGATTTTGCGGCTAAAC 230456 28 100.0 32 ............................ ATTGGCTATCAGACCTGCAAAACGATTTACCT 230396 28 100.0 32 ............................ TCTCCCTTAGCCTCGTTCTCAAGCTTTTTCAG 230336 28 100.0 32 ............................ GATCCATTGGGGAACAATGTCTTTCAGGAAAT 230276 28 100.0 32 ............................ AAATTGCCATTCACTGGCTGGATGCGCTTGGT 230216 28 100.0 32 ............................ GAGCTCCGCTTTCTTGGCATCGCTCAATTCTT 230156 28 100.0 32 ............................ TCAACGGCAATGAAGCTACGCTGATTTTAAAC 230096 28 100.0 32 ............................ AGTCATGAAAAATGCCCCCAAAATTAATTTAG 230036 28 100.0 33 ............................ TGACCAGTTTGCAAACATGATTGATGACCTGAT 229975 28 96.4 32 .............C.............. ATGCGAGATTTTCTCAATGCGAAAGAAGAGGT 229915 28 85.7 0 ...........AGC........A..... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTAGGGGGAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAATGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //